Wall clock time and date at job start Tue Mar 31 2020 13:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00675 * 2 1 4 4 H 1.48503 * 109.46832 * 89.99737 * 3 2 1 5 5 H 1.48503 * 109.46743 * 330.00417 * 3 2 1 6 6 H 1.48490 * 109.47360 * 210.00061 * 3 2 1 7 7 C 1.37888 * 119.99593 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99977 * 359.97438 * 7 2 1 9 9 C 1.50691 * 119.99704 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46795 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47074 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47074 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.47152 * 179.97438 * 12 11 10 14 14 O 1.21281 * 119.99714 * 0.02562 * 13 12 11 15 15 N 1.34773 * 120.00233 * 179.97438 * 13 12 11 16 16 C 1.47426 * 125.64678 * 354.76251 * 15 13 12 17 17 C 1.55127 * 104.72478 * 155.81554 * 16 15 13 18 18 C 1.55154 * 101.48488 * 37.29154 * 17 16 15 19 19 C 1.47023 * 125.65296 * 175.06413 * 15 13 12 20 20 H 1.08997 * 109.88073 * 300.44394 * 19 15 13 21 21 C 1.53004 * 109.87984 * 61.60600 * 19 15 13 22 22 H 1.09001 * 109.62471 * 298.01379 * 21 19 15 23 23 C 1.53234 * 109.62524 * 58.58297 * 21 19 15 24 24 C 1.52951 * 109.40570 * 174.33955 * 23 21 19 25 25 C 1.52955 * 109.81901 * 296.40690 * 24 23 21 26 26 C 1.53227 * 109.40633 * 63.59550 * 25 24 23 27 27 C 1.51261 * 109.62509 * 177.62772 * 21 19 15 28 28 O 1.20760 * 120.85503 * 8.96100 * 27 21 19 29 29 H 0.97006 * 119.99304 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.47544 * 299.99323 * 9 7 2 31 31 H 1.09000 * 109.47645 * 60.00271 * 9 7 2 32 32 H 1.08998 * 109.47207 * 299.99520 * 10 9 7 33 33 H 1.08998 * 109.47278 * 60.00298 * 10 9 7 34 34 H 1.09004 * 109.47311 * 300.00023 * 11 10 9 35 35 H 1.09001 * 109.47093 * 59.99937 * 11 10 9 36 36 H 1.08998 * 109.47207 * 299.99766 * 12 11 10 37 37 H 1.09001 * 109.47212 * 60.00009 * 12 11 10 38 38 H 1.09007 * 110.36509 * 274.74343 * 16 15 13 39 39 H 1.09002 * 110.37095 * 37.06281 * 16 15 13 40 40 H 1.09002 * 111.19413 * 279.19072 * 17 16 15 41 41 H 1.09000 * 110.94385 * 155.28652 * 17 16 15 42 42 H 1.09001 * 110.72110 * 205.96652 * 18 17 16 43 43 H 1.09003 * 110.87118 * 82.77219 * 18 17 16 44 44 H 1.09004 * 109.48092 * 294.32401 * 23 21 19 45 45 H 1.09000 * 109.48120 * 54.36104 * 23 21 19 46 46 H 1.08995 * 109.41942 * 176.29747 * 24 23 21 47 47 H 1.09007 * 109.35491 * 56.47063 * 24 23 21 48 48 H 1.08997 * 109.48384 * 303.61363 * 25 24 23 49 49 H 1.09010 * 109.49694 * 183.58351 * 25 24 23 50 50 H 1.09002 * 109.62676 * 185.65934 * 26 25 24 51 51 H 1.08998 * 109.62605 * 65.08992 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0462 1.4001 5 1 1.4468 2.6526 -0.7000 6 1 3.5468 1.4400 -0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 1.4644 -2.1295 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0213 -2.6368 -0.0001 11 6 5.5513 -2.6369 -0.0001 12 6 6.0612 -4.0794 0.0004 13 6 7.5682 -4.0796 -0.0003 14 8 8.1747 -3.0293 -0.0006 15 7 8.2421 -5.2468 0.0005 16 6 7.6385 -6.5872 0.1115 17 6 8.6721 -7.5405 -0.5437 18 6 10.0116 -6.9055 -0.0859 19 6 9.7013 -5.3940 -0.1028 20 1 10.0531 -4.9537 -1.0357 21 6 10.3787 -4.7103 1.0866 22 1 10.1538 -3.6438 1.0726 23 6 9.8721 -5.3299 2.3933 24 6 10.6532 -4.7432 3.5703 25 6 12.1296 -5.1260 3.4552 26 6 12.7210 -4.4987 2.1886 27 6 11.8751 -4.9151 1.0056 28 8 12.3817 -5.3984 0.0217 29 1 -0.4849 0.8402 0.0004 30 1 3.8752 -0.6799 -0.8895 31 1 3.8745 -0.6811 0.8905 32 1 3.6577 -3.1508 0.8897 33 1 3.6583 -3.1504 -0.8903 34 1 5.9147 -2.1230 -0.8901 35 1 5.9147 -2.1231 0.8899 36 1 5.6979 -4.5929 0.8906 37 1 5.6978 -4.5936 -0.8894 38 1 7.4873 -6.8497 1.1586 39 1 6.6931 -6.6236 -0.4298 40 1 8.5855 -7.5289 -1.6302 41 1 8.5676 -8.5540 -0.1564 42 1 10.8109 -7.1430 -0.7880 43 1 10.2735 -7.2342 0.9198 44 1 8.8118 -5.1079 2.5139 45 1 10.0165 -6.4099 2.3635 46 1 10.2493 -5.1341 4.5041 47 1 10.5588 -3.6573 3.5610 48 1 12.2207 -6.2108 3.4003 49 1 12.6695 -4.7597 4.3285 50 1 13.7435 -4.8498 2.0492 51 1 12.7133 -3.4126 2.2800 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000644016830.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:48 Heat of formation + Delta-G solvation = -106.425260 kcal Electronic energy + Delta-G solvation = -27853.368204 eV Core-core repulsion = 24137.210581 eV Total energy + Delta-G solvation = -3716.157623 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.209 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.23358 -39.61526 -37.67515 -36.58133 -35.02723 -32.85218 -32.32021 -31.79281 -30.07492 -29.65242 -27.57290 -26.06746 -24.16881 -23.07533 -22.15361 -21.88761 -21.07957 -20.02519 -19.29737 -18.70988 -17.07132 -16.96675 -16.54320 -16.07951 -15.65356 -15.56430 -15.23979 -14.99982 -14.51817 -14.38685 -14.18370 -14.06661 -13.68298 -13.51145 -13.09293 -12.89902 -12.74775 -12.65763 -12.53414 -12.23528 -12.11215 -12.06578 -11.72356 -11.56469 -11.50172 -11.35208 -11.13254 -11.10816 -10.98128 -10.73016 -10.65686 -10.53031 -9.98632 -9.83186 -9.67756 -9.62959 -9.38570 -9.11409 -8.79076 -8.48961 -6.00239 -3.97552 1.64286 2.63046 2.76729 3.35421 3.42523 3.48729 3.74902 4.11047 4.15181 4.31925 4.35611 4.43457 4.50436 4.55437 4.64275 4.76164 4.82061 4.89092 4.97225 5.03680 5.12497 5.15463 5.23141 5.26051 5.32777 5.35036 5.39522 5.44499 5.47378 5.53609 5.58592 5.62793 5.65859 5.70888 5.76923 5.81284 5.86692 5.94289 6.03661 6.11841 6.22846 6.42396 6.68750 6.82284 6.99653 7.16746 7.37784 7.39692 7.51556 7.85286 8.15789 8.58795 9.04850 9.63237 11.13280 Molecular weight = 321.21amu Principal moments of inertia in cm(-1) A = 0.018646 B = 0.002474 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.309956 B =11314.893304 C =12048.851926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.264 1.264 7 C -0.519 4.519 8 H 0.071 0.929 9 C -0.015 4.015 10 C -0.102 4.102 11 C -0.106 4.106 12 C -0.134 4.134 13 C 0.529 3.471 14 O -0.535 6.535 15 N -0.620 5.620 16 C 0.098 3.902 17 C -0.133 4.133 18 C -0.130 4.130 19 C 0.152 3.848 20 H 0.079 0.921 21 C -0.151 4.151 22 H 0.120 0.880 23 C -0.105 4.105 24 C -0.127 4.127 25 C -0.112 4.112 26 C -0.170 4.170 27 C 0.370 3.630 28 O -0.454 6.454 29 H 0.262 0.738 30 H 0.015 0.985 31 H 0.011 0.989 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.077 0.923 44 H 0.074 0.926 45 H 0.069 0.931 46 H 0.071 0.929 47 H 0.070 0.930 48 H 0.066 0.934 49 H 0.074 0.926 50 H 0.088 0.912 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.799 -17.991 5.740 31.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.557 4.557 8 H 0.089 0.911 9 C -0.053 4.053 10 C -0.140 4.140 11 C -0.144 4.144 12 C -0.174 4.174 13 C 0.319 3.681 14 O -0.411 6.411 15 N -0.355 5.355 16 C -0.025 4.025 17 C -0.171 4.171 18 C -0.167 4.167 19 C 0.049 3.951 20 H 0.098 0.902 21 C -0.171 4.171 22 H 0.138 0.862 23 C -0.142 4.142 24 C -0.165 4.165 25 C -0.150 4.150 26 C -0.208 4.208 27 C 0.245 3.755 28 O -0.327 6.327 29 H 0.072 0.928 30 H 0.034 0.966 31 H 0.029 0.971 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.102 0.898 42 H 0.105 0.895 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.087 0.913 46 H 0.090 0.910 47 H 0.088 0.912 48 H 0.085 0.915 49 H 0.093 0.907 50 H 0.106 0.894 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 26.175 -17.475 5.201 31.899 hybrid contribution 0.263 0.970 0.088 1.009 sum 26.438 -16.505 5.289 31.612 Atomic orbital electron populations 1.69925 1.06307 1.26809 1.51500 1.25047 0.94733 0.99222 0.94626 0.86773 0.80448 0.83557 0.78523 1.20325 1.21465 1.18897 1.21185 0.89669 0.94367 1.50477 0.91116 1.19572 0.96897 0.92494 0.96289 1.21471 0.91683 0.99910 1.00895 1.21490 0.97206 0.92823 1.02859 1.21767 0.89971 1.01614 1.04035 1.20793 0.90564 0.81731 0.74971 1.90677 1.70510 1.30608 1.49282 1.48664 1.06538 1.06238 1.74111 1.22403 0.97360 0.81801 1.00892 1.22827 0.94242 0.98724 1.01354 1.22799 0.98100 0.93084 1.02756 1.21297 0.80487 0.95900 0.97442 0.90250 1.22302 0.93562 1.04311 0.96901 0.86184 1.21582 1.00616 1.00032 0.92004 1.21606 0.94557 1.01823 0.98474 1.21514 0.96140 1.00828 0.96499 1.22321 1.00154 1.03264 0.95047 1.24770 0.91306 0.72801 0.86658 1.90385 1.76369 1.33161 1.32797 0.92827 0.96635 0.97088 0.92891 0.92874 0.91814 0.91831 0.89143 0.89067 0.91171 0.90057 0.90396 0.89791 0.89514 0.90483 0.90751 0.91253 0.91018 0.91164 0.91542 0.90711 0.89356 0.88307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.42 13.96 55.43 0.77 -27.65 16 2 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 22.39 27.47 -169.99 -4.67 17.72 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 6 H -0.26 -6.54 6.54 56.52 0.37 -6.17 16 7 C -0.52 -15.10 9.66 -34.44 -0.33 -15.44 16 8 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 9 C -0.02 -0.37 4.04 -27.89 -0.11 -0.49 16 10 C -0.10 -2.00 5.15 -26.73 -0.14 -2.14 16 11 C -0.11 -1.77 4.50 -26.73 -0.12 -1.90 16 12 C -0.13 -1.71 4.63 -27.88 -0.13 -1.84 16 13 C 0.53 7.13 7.67 -10.99 -0.08 7.04 16 14 O -0.53 -9.13 14.87 5.56 0.08 -9.04 16 15 N -0.62 -6.41 2.39 -162.88 -0.39 -6.80 16 16 C 0.10 0.70 6.75 -2.41 -0.02 0.69 16 17 C -0.13 -0.82 7.10 -24.47 -0.17 -0.99 16 18 C -0.13 -0.99 5.06 -24.90 -0.13 -1.11 16 19 C 0.15 1.54 2.33 -66.95 -0.16 1.38 16 20 H 0.08 0.98 8.08 -51.93 -0.42 0.56 16 21 C -0.15 -1.43 2.20 -91.37 -0.20 -1.63 16 22 H 0.12 1.42 6.76 -51.93 -0.35 1.07 16 23 C -0.10 -0.78 4.81 -26.64 -0.13 -0.91 16 24 C -0.13 -0.79 5.81 -26.78 -0.16 -0.94 16 25 C -0.11 -0.59 5.94 -26.64 -0.16 -0.75 16 26 C -0.17 -1.12 6.17 -27.49 -0.17 -1.29 16 27 C 0.37 3.43 6.17 -28.48 -0.18 3.25 16 28 O -0.45 -5.39 15.70 6.00 0.09 -5.30 16 29 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 30 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 31 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 35 H 0.06 1.11 8.10 -51.93 -0.42 0.69 16 36 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.09 1.04 7.96 -51.93 -0.41 0.62 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.53 7.48 -51.93 -0.39 0.14 16 40 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.09 0.73 7.64 -51.93 -0.40 0.33 16 43 H 0.08 0.52 5.64 -51.93 -0.29 0.23 16 44 H 0.07 0.64 7.79 -51.93 -0.40 0.24 16 45 H 0.07 0.45 5.89 -51.93 -0.31 0.14 16 46 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 47 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.07 0.31 8.14 -51.92 -0.42 -0.11 16 50 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 51 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 390.82 15.07 5.89 5.89 Total: -1.00 -34.39 390.82 -9.93 -44.32 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -9.24 Total: -3.91 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: -2.47 Total: -15.24 kcal Atomic # 7 Polarization: -34.83 SS G_CDS: 0.38 Total: -34.44 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: 0.18 Total: -14.34 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -4.67 Total: 17.72 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.39 -9.93 -44.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000644016830.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.106 kcal (2) G-P(sol) polarization free energy of solvation -34.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds