Wall clock time and date at job start Tue Mar 31 2020 12:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.46783 * 2 1 4 4 N 1.28714 * 126.03449 * 275.03524 * 3 2 1 5 5 N 1.28510 * 110.63659 * 179.97438 * 4 3 2 6 6 C 1.33319 * 109.44073 * 359.72693 * 5 4 3 7 7 C 1.50696 * 126.81438 * 180.27595 * 6 5 4 8 8 C 1.36997 * 106.37079 * 0.43262 * 6 5 4 9 9 C 1.47239 * 127.19236 * 179.84975 * 8 6 5 10 10 O 1.21622 * 120.00014 * 87.77302 * 9 8 6 11 11 N 1.34775 * 119.99695 * 267.78104 * 9 8 6 12 12 C 1.46502 * 119.99849 * 185.07367 * 11 9 8 13 13 H 1.09003 * 109.52290 * 34.91830 * 12 11 9 14 14 C 1.53032 * 109.49828 * 274.83543 * 12 11 9 15 15 C 1.53042 * 109.53708 * 178.68337 * 14 12 11 16 16 C 1.53193 * 109.31205 * 61.36610 * 15 14 12 17 17 N 1.46918 * 108.77573 * 305.36232 * 16 15 14 18 18 C 1.36939 * 120.63355 * 233.63131 * 17 16 15 19 19 H 1.07995 * 119.99919 * 145.30427 * 18 17 16 20 20 C 1.38810 * 119.99896 * 325.30996 * 18 17 16 21 21 N 1.31623 * 120.00046 * 346.76427 * 20 18 17 22 22 Si 1.86797 * 120.00177 * 166.76288 * 20 18 17 23 23 H 1.48493 * 109.47117 * 90.00008 * 22 20 18 24 24 H 1.48496 * 109.47383 * 210.00243 * 22 20 18 25 25 H 1.48506 * 109.47042 * 329.99854 * 22 20 18 26 26 C 1.46933 * 118.74049 * 53.61072 * 17 16 15 27 27 H 1.09001 * 109.58181 * 66.17391 * 26 17 16 28 28 C 1.52994 * 109.70634 * 186.53371 * 26 17 16 29 29 H 1.08996 * 109.47329 * 300.00513 * 1 2 3 30 30 H 1.09000 * 109.46929 * 60.00234 * 1 2 3 31 31 H 1.09003 * 109.47231 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47367 * 240.00251 * 2 1 3 33 33 H 1.09000 * 109.46929 * 119.99766 * 2 1 3 34 34 H 1.09003 * 109.47722 * 270.17814 * 7 6 5 35 35 H 1.09005 * 109.47584 * 30.18339 * 7 6 5 36 36 H 1.09007 * 109.47212 * 150.17884 * 7 6 5 37 37 H 0.97001 * 120.00545 * 5.06952 * 11 9 8 38 38 H 1.08995 * 109.46274 * 298.70572 * 14 12 11 39 39 H 1.09001 * 109.46338 * 58.66435 * 14 12 11 40 40 H 1.08999 * 109.49659 * 301.41182 * 15 14 12 41 41 H 1.09001 * 109.51994 * 181.33248 * 15 14 12 42 42 H 1.09005 * 109.58406 * 185.57314 * 16 15 14 43 43 H 1.08996 * 109.70476 * 65.22253 * 16 15 14 44 44 H 0.96996 * 120.00139 * 179.97438 * 21 20 18 45 45 H 1.08999 * 109.46819 * 179.35929 * 28 26 17 46 46 H 1.09002 * 109.46946 * 299.36166 * 28 26 17 47 47 H 1.09003 * 109.47007 * 59.35903 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.1845 2.1256 -1.0368 5 7 2.6252 3.2840 -0.6969 6 6 2.7605 3.3358 0.6284 7 6 3.2422 4.5095 1.4417 8 6 2.3782 2.1092 1.1039 9 6 2.3531 1.6673 2.5082 10 8 1.3658 1.8653 3.1903 11 7 3.4241 1.0436 3.0376 12 6 3.3595 0.5052 4.3986 13 1 2.3552 0.1297 4.5945 14 6 3.6963 1.6108 5.4017 15 6 3.5971 1.0578 6.8253 16 6 4.6103 -0.0781 6.9993 17 7 4.3852 -1.0779 5.9466 18 6 4.1930 -2.3957 6.2654 19 1 3.5195 -3.0009 5.6768 20 6 4.8636 -2.9534 7.3452 21 7 5.8683 -2.3091 7.9001 22 14 4.3401 -4.6184 8.0110 23 1 5.0908 -5.6903 7.3093 24 1 4.6292 -4.6828 9.4661 25 1 2.8840 -4.8056 7.7869 26 6 4.3700 -0.6369 4.5450 27 1 5.3621 -0.2856 4.2617 28 6 3.9612 -1.8024 3.6420 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.3256 4.4567 1.5496 35 1 2.9721 5.4369 0.9366 36 1 2.7773 4.4839 2.4273 37 1 4.2377 0.9510 2.5176 38 1 4.7099 1.9687 5.2210 39 1 2.9936 2.4355 5.2828 40 1 2.5905 0.6771 6.9983 41 1 3.8140 1.8514 7.5402 42 1 4.4763 -0.5406 7.9772 43 1 5.6229 0.3170 6.9176 44 1 6.3367 -2.6987 8.6549 45 1 3.9401 -1.4681 2.6047 46 1 4.6813 -2.6138 3.7477 47 1 2.9711 -2.1554 3.9302 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993434021.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:01 Heat of formation + Delta-G solvation = 71.896041 kcal Electronic energy + Delta-G solvation = -28498.083443 eV Core-core repulsion = 24718.410820 eV Total energy + Delta-G solvation = -3779.672623 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.42703 -39.82167 -37.72930 -35.88288 -34.48856 -33.00769 -32.57615 -31.76295 -31.09884 -29.41770 -27.97881 -26.36972 -25.17040 -24.96466 -23.66037 -21.88662 -21.33144 -20.82955 -20.36096 -19.53443 -18.04015 -16.84412 -16.69390 -16.39526 -15.78029 -15.19154 -15.00607 -14.61790 -14.30947 -13.97289 -13.87786 -13.78134 -13.60027 -13.42560 -12.99946 -12.85663 -12.76804 -12.67440 -12.42083 -12.07930 -11.87373 -11.81967 -11.65731 -11.24059 -11.10016 -11.01119 -10.84178 -10.70736 -10.43022 -10.39948 -10.26238 -10.16160 -10.13680 -9.82874 -9.49630 -9.30617 -8.90552 -8.55620 -6.69416 -5.89081 -3.39441 1.11676 1.74367 2.25031 2.48254 3.07470 3.30250 3.38374 3.39863 4.05269 4.25727 4.40094 4.45677 4.54740 4.72118 4.74769 5.09070 5.18298 5.19747 5.27095 5.35914 5.39592 5.43103 5.45928 5.56721 5.66235 5.69359 5.72127 5.85101 5.93448 6.01886 6.08527 6.17474 6.23831 6.25011 6.39834 6.44658 6.57986 6.65092 6.72260 6.86677 6.92752 7.28327 7.41921 7.54887 7.73377 8.02355 8.24136 8.38423 9.11066 9.71811 10.31283 11.19497 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.018981 B = 0.003502 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.801076 B = 7994.005620 C = 8863.567407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.107 3.893 3 N -0.266 5.266 4 N -0.067 5.067 5 N -0.270 5.270 6 C 0.024 3.976 7 C -0.073 4.073 8 C -0.059 4.059 9 C 0.592 3.408 10 O -0.516 6.516 11 N -0.701 5.701 12 C 0.130 3.870 13 H 0.088 0.912 14 C -0.118 4.118 15 C -0.140 4.140 16 C 0.172 3.828 17 N -0.579 5.579 18 C -0.259 4.259 19 H 0.066 0.934 20 C 0.012 3.988 21 N -0.898 5.898 22 Si 0.901 3.099 23 H -0.286 1.286 24 H -0.289 1.289 25 H -0.278 1.278 26 C 0.167 3.833 27 H 0.029 0.971 28 C -0.136 4.136 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.112 0.888 33 H 0.107 0.893 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.400 0.600 38 H 0.056 0.944 39 H 0.053 0.947 40 H 0.057 0.943 41 H 0.053 0.947 42 H 0.080 0.920 43 H 0.022 0.978 44 H 0.255 0.745 45 H 0.034 0.966 46 H 0.066 0.934 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.313 7.018 -12.566 15.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.014 4.014 3 N -0.064 5.064 4 N -0.046 5.046 5 N -0.135 5.135 6 C -0.116 4.116 7 C -0.132 4.132 8 C -0.194 4.194 9 C 0.373 3.627 10 O -0.389 6.389 11 N -0.351 5.351 12 C 0.025 3.975 13 H 0.106 0.894 14 C -0.157 4.157 15 C -0.180 4.180 16 C 0.047 3.953 17 N -0.303 5.303 18 C -0.389 4.389 19 H 0.084 0.916 20 C -0.188 4.188 21 N -0.541 5.541 22 Si 0.730 3.270 23 H -0.213 1.213 24 H -0.215 1.215 25 H -0.203 1.203 26 C 0.059 3.941 27 H 0.047 0.953 28 C -0.193 4.193 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.130 0.870 33 H 0.125 0.875 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.234 0.766 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.098 0.902 43 H 0.040 0.960 44 H 0.065 0.935 45 H 0.053 0.947 46 H 0.085 0.915 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.048 7.084 -13.430 16.344 hybrid contribution 0.249 -1.098 1.215 1.657 sum -5.799 5.986 -12.215 14.787 Atomic orbital electron populations 1.22170 0.92434 1.04270 1.03987 1.22270 0.97025 0.75889 1.06206 1.47827 1.41456 1.13362 1.03712 1.78150 1.16665 0.98087 1.11684 1.74809 1.15804 1.11049 1.11887 1.22144 1.03230 0.95052 0.91177 1.20181 1.01621 0.93288 0.98076 1.22000 1.11981 0.94830 0.90570 1.16783 0.83924 0.78387 0.83638 1.90865 1.33231 1.53927 1.60911 1.46195 1.14926 1.56405 1.17606 1.21977 1.02529 0.94820 0.78180 0.89405 1.21765 1.00735 0.97286 0.95864 1.22182 1.01865 0.99479 0.94454 1.20773 0.93447 0.87228 0.93891 1.43956 1.83925 1.04444 0.97926 1.19045 1.19947 0.86391 1.13521 0.91594 1.25215 0.95336 0.97635 1.00589 1.70006 1.20444 1.38869 1.24736 0.86340 0.78446 0.83990 0.78218 1.21284 1.21509 1.20338 1.20571 0.94062 0.91474 0.87951 0.95340 1.21812 1.02305 0.99103 0.96118 0.91078 0.91151 0.89321 0.86964 0.87518 0.90011 0.89914 0.90323 0.76572 0.92486 0.92862 0.92458 0.92819 0.90153 0.96015 0.93520 0.94701 0.91494 0.92626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 10.24 37.16 0.38 -0.99 16 2 C 0.11 0.92 6.99 -4.04 -0.03 0.89 16 3 N -0.27 -3.19 3.39 -57.37 -0.19 -3.39 16 4 N -0.07 -0.92 13.14 60.35 0.79 -0.12 16 5 N -0.27 -3.88 12.35 33.51 0.41 -3.47 16 6 C 0.02 0.31 7.29 -82.40 -0.60 -0.29 16 7 C -0.07 -0.73 10.28 36.00 0.37 -0.36 16 8 C -0.06 -0.77 6.74 -82.33 -0.55 -1.33 16 9 C 0.59 8.35 6.80 -12.60 -0.09 8.27 16 10 O -0.52 -9.04 16.79 5.26 0.09 -8.95 16 11 N -0.70 -9.23 4.56 -54.82 -0.25 -9.48 16 12 C 0.13 2.11 1.96 -67.81 -0.13 1.98 16 13 H 0.09 1.63 7.66 -51.93 -0.40 1.23 16 14 C -0.12 -1.93 5.46 -26.69 -0.15 -2.08 16 15 C -0.14 -2.55 6.08 -26.61 -0.16 -2.72 16 16 C 0.17 3.82 5.25 -3.71 -0.02 3.80 16 17 N -0.58 -13.22 2.96 -164.78 -0.49 -13.71 16 18 C -0.26 -6.54 8.43 -15.06 -0.13 -6.67 16 19 H 0.07 1.63 6.40 -52.49 -0.34 1.29 16 20 C 0.01 0.32 4.96 -17.43 -0.09 0.23 16 21 N -0.90 -24.72 11.47 55.49 0.64 -24.08 16 22 Si 0.90 20.62 29.57 -169.99 -5.03 15.59 16 23 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 C 0.17 3.08 3.03 -67.60 -0.20 2.88 16 27 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 28 C -0.14 -2.26 7.89 37.15 0.29 -1.97 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.11 0.88 7.75 -51.93 -0.40 0.48 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.80 8.02 -51.92 -0.42 0.38 16 37 H 0.40 4.50 8.59 -40.82 -0.35 4.15 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.05 0.86 8.11 -51.93 -0.42 0.44 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.08 2.01 6.46 -51.93 -0.34 1.68 16 43 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 45 H 0.03 0.45 7.78 -51.93 -0.40 0.05 16 46 H 0.07 1.22 7.71 -51.93 -0.40 0.82 16 47 H 0.05 0.96 7.39 -51.93 -0.38 0.58 16 LS Contribution 380.69 15.07 5.74 5.74 Total: -1.00 -30.71 380.69 -7.03 -37.73 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -7.63 Total: 2.49 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: -1.10 Total: 1.64 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: 0.91 Total: -54.25 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.09 Total: -8.95 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.03 Total: 15.59 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.71 -7.03 -37.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993434021.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.629 kcal (2) G-P(sol) polarization free energy of solvation -30.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds