Wall clock time and date at job start Tue Mar 31 2020 12:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46490 * 109.47291 * 2 1 4 4 N 1.28720 * 126.03744 * 84.93960 * 3 2 1 5 5 N 1.28509 * 110.63895 * 180.02562 * 4 3 2 6 6 C 1.33315 * 109.44167 * 0.02562 * 5 4 3 7 7 C 1.50701 * 126.81578 * 179.97438 * 6 5 4 8 8 C 1.37007 * 106.37150 * 359.97438 * 6 5 4 9 9 C 1.47235 * 127.18788 * 179.97438 * 8 6 5 10 10 O 1.21616 * 120.00024 * 279.61375 * 9 8 6 11 11 N 1.34777 * 119.99845 * 99.61596 * 9 8 6 12 12 C 1.46918 * 120.63414 * 354.75773 * 11 9 8 13 13 C 1.53185 * 108.77744 * 126.36863 * 12 11 9 14 14 C 1.53042 * 109.31748 * 54.63366 * 13 12 11 15 15 H 1.08996 * 109.46149 * 178.61642 * 14 13 12 16 16 N 1.46508 * 109.45689 * 58.65430 * 14 13 12 17 17 C 1.36936 * 119.99905 * 85.00409 * 16 14 13 18 18 H 1.08003 * 119.99643 * 359.97438 * 17 16 14 19 19 C 1.38805 * 119.99880 * 180.02562 * 17 16 14 20 20 N 1.31614 * 119.99976 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99992 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47049 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47358 * 119.99500 * 21 19 17 24 24 H 1.48495 * 109.47401 * 239.99860 * 21 19 17 25 25 C 1.53043 * 109.53355 * 298.63886 * 14 13 12 26 26 H 1.08994 * 109.49628 * 301.40709 * 25 14 13 27 27 C 1.53001 * 109.49266 * 181.31124 * 25 14 13 28 28 C 1.46930 * 120.62775 * 174.47606 * 11 9 8 29 29 H 1.09004 * 109.46544 * 64.99780 * 1 2 3 30 30 H 1.08998 * 109.47186 * 184.99323 * 1 2 3 31 31 H 1.08993 * 109.47262 * 304.99475 * 1 2 3 32 32 H 1.09003 * 109.47100 * 239.99728 * 2 1 3 33 33 H 1.09001 * 109.46697 * 119.99861 * 2 1 3 34 34 H 1.09002 * 109.47247 * 90.02094 * 7 6 5 35 35 H 1.08997 * 109.47308 * 210.02497 * 7 6 5 36 36 H 1.09003 * 109.47150 * 330.02574 * 7 6 5 37 37 H 1.09004 * 109.58573 * 246.15831 * 12 11 9 38 38 H 1.09004 * 109.58598 * 6.57668 * 12 11 9 39 39 H 1.09006 * 109.49759 * 174.58654 * 13 12 11 40 40 H 1.09008 * 109.49880 * 294.67874 * 13 12 11 41 41 H 0.96998 * 119.99522 * 265.00056 * 16 14 13 42 42 H 0.97010 * 119.99667 * 180.02562 * 20 19 17 43 43 H 1.08996 * 109.46980 * 60.00211 * 27 25 14 44 44 H 1.09001 * 109.46781 * 179.97438 * 27 25 14 45 45 H 1.08995 * 109.47308 * 299.99754 * 27 25 14 46 46 H 1.09001 * 109.58447 * 353.41524 * 28 11 9 47 47 H 1.08997 * 109.58945 * 113.84176 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 7 2.1843 2.1257 1.0368 5 7 2.6252 3.2839 0.6969 6 6 2.7662 3.3337 -0.6279 7 6 3.2551 4.5049 -1.4406 8 6 2.3784 2.1089 -1.1038 9 6 2.3529 1.6673 -2.5082 10 8 1.4270 1.9862 -3.2292 11 7 3.3557 0.9095 -2.9945 12 6 4.5358 0.6114 -2.1716 13 6 4.7396 -0.9064 -2.1333 14 6 4.8197 -1.4427 -3.5645 15 1 4.9893 -2.5191 -3.5399 16 7 5.9263 -0.7903 -4.2689 17 6 7.1981 -1.2843 -4.1524 18 1 7.3854 -2.1546 -3.5408 19 6 8.2466 -0.6659 -4.8194 20 7 8.0183 0.3949 -5.5642 21 14 9.9817 -1.3393 -4.6599 22 1 9.9712 -2.5291 -3.7712 23 1 10.4874 -1.7273 -6.0011 24 1 10.8660 -0.2968 -4.0800 25 6 3.5071 -1.1498 -4.2949 26 1 2.6803 -1.6143 -3.7575 27 6 3.5758 -1.7152 -5.7149 28 6 3.2868 0.3606 -4.3557 29 1 -0.3632 0.4344 -0.9314 30 1 -0.3633 -1.0237 0.0894 31 1 -0.3633 0.5893 0.8418 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.3384 4.4464 -1.5469 35 1 2.7915 4.4817 -2.4267 36 1 2.9892 5.4337 -0.9358 37 1 5.4145 1.0873 -2.6070 38 1 4.3792 0.9848 -1.1596 39 1 5.6659 -1.1359 -1.6065 40 1 3.9012 -1.3732 -1.6162 41 1 5.7580 -0.0085 -4.8179 42 1 8.7511 0.8269 -6.0306 43 1 3.7336 -2.7927 -5.6697 44 1 2.6406 -1.5067 -6.2346 45 1 4.4020 -1.2491 -6.2519 46 1 2.3063 0.5684 -4.7843 47 1 4.0615 0.8155 -4.9729 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036064421.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:28 Heat of formation + Delta-G solvation = 69.963201 kcal Electronic energy + Delta-G solvation = -29064.855561 eV Core-core repulsion = 25285.099124 eV Total energy + Delta-G solvation = -3779.756437 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.36352 -40.07592 -37.86342 -35.82545 -34.46528 -33.15343 -32.52925 -31.57392 -31.05256 -29.31418 -28.10566 -26.49358 -25.36107 -24.78647 -23.65960 -22.71097 -21.83517 -21.25925 -19.86888 -18.62005 -17.68626 -17.40050 -16.70390 -16.47510 -15.85788 -15.25537 -14.90738 -14.64791 -14.42105 -14.10817 -13.94467 -13.79161 -13.56989 -13.39920 -13.06358 -12.84818 -12.67763 -12.64612 -12.37345 -12.35757 -11.98333 -11.82975 -11.73942 -11.53894 -11.32950 -10.99932 -10.99584 -10.91000 -10.65038 -10.63593 -10.26404 -10.20951 -10.02929 -9.97488 -9.67267 -9.16689 -9.02369 -8.49598 -7.08150 -5.87622 -3.16856 1.20678 1.82061 2.36276 2.52354 3.00244 3.36077 3.42385 3.44553 4.07982 4.21879 4.47952 4.49481 4.50017 4.76507 4.82120 5.00204 5.12046 5.16576 5.17314 5.20602 5.33988 5.44509 5.46905 5.57174 5.59460 5.61659 5.66318 5.69578 5.74493 5.83918 5.88643 5.93966 6.08533 6.14835 6.17358 6.22285 6.31127 6.35061 6.44355 6.52777 6.60006 6.76405 6.83920 7.36069 7.61069 7.97942 8.30399 8.34474 9.42643 9.97236 10.32161 11.34551 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.014964 B = 0.004087 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.734999 B = 6849.091309 C = 7361.396730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.268 5.268 4 N -0.068 5.068 5 N -0.269 5.269 6 C 0.025 3.975 7 C -0.074 4.074 8 C -0.050 4.050 9 C 0.592 3.408 10 O -0.527 6.527 11 N -0.585 5.585 12 C 0.114 3.886 13 C -0.149 4.149 14 C 0.179 3.821 15 H 0.053 0.947 16 N -0.718 5.718 17 C -0.241 4.241 18 H 0.070 0.930 19 C -0.009 4.009 20 N -0.930 5.930 21 Si 0.903 3.097 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.108 4.108 26 H 0.065 0.935 27 C -0.137 4.137 28 C 0.118 3.882 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.105 0.895 33 H 0.112 0.888 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.062 0.938 39 H 0.077 0.923 40 H 0.045 0.955 41 H 0.384 0.616 42 H 0.255 0.745 43 H 0.055 0.945 44 H 0.044 0.956 45 H 0.072 0.928 46 H 0.087 0.913 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.389 -1.056 7.706 15.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.014 4.014 3 N -0.066 5.066 4 N -0.047 5.047 5 N -0.134 5.134 6 C -0.114 4.114 7 C -0.132 4.132 8 C -0.185 4.185 9 C 0.375 3.625 10 O -0.403 6.403 11 N -0.316 5.316 12 C -0.008 4.008 13 C -0.190 4.190 14 C 0.068 3.932 15 H 0.071 0.929 16 N -0.360 5.360 17 C -0.372 4.372 18 H 0.088 0.912 19 C -0.205 4.205 20 N -0.578 5.578 21 Si 0.735 3.265 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.128 4.128 26 H 0.083 0.917 27 C -0.195 4.195 28 C -0.003 4.003 29 H 0.087 0.913 30 H 0.105 0.895 31 H 0.089 0.911 32 H 0.123 0.877 33 H 0.130 0.870 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.111 0.889 38 H 0.081 0.919 39 H 0.096 0.904 40 H 0.063 0.937 41 H 0.219 0.781 42 H 0.065 0.935 43 H 0.074 0.926 44 H 0.064 0.936 45 H 0.091 0.909 46 H 0.105 0.895 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.832 -0.950 8.865 16.456 hybrid contribution 1.153 -0.358 -1.024 1.583 sum -12.679 -1.308 7.841 14.965 Atomic orbital electron populations 1.22165 0.92568 1.04073 1.03948 1.22244 0.96791 0.76188 1.06162 1.47773 1.41892 1.13219 1.03708 1.78134 1.16862 0.98080 1.11611 1.74801 1.15722 1.11022 1.11877 1.22133 1.03001 0.95153 0.91137 1.20189 1.01788 0.93215 0.98038 1.21823 1.11623 0.94681 0.90343 1.16846 0.82562 0.78918 0.84182 1.90820 1.35381 1.55544 1.58531 1.48127 1.18981 1.48436 1.16081 1.21773 0.87689 0.97643 0.93705 1.22572 1.00949 0.94231 1.01292 1.20216 0.87291 0.96418 0.89275 0.92856 1.42470 1.02795 1.34384 1.56366 1.19235 0.84407 1.09328 1.24238 0.91194 1.24698 0.97904 0.97958 0.99939 1.69651 1.31129 1.22107 1.34921 0.86181 0.85133 0.77991 0.77216 1.20642 1.21897 1.21911 1.21642 0.98639 0.94503 0.98017 0.91687 1.21661 1.01608 1.00997 0.95223 1.21701 1.03369 0.93723 0.81546 0.91276 0.89454 0.91082 0.87701 0.87001 0.89866 0.90315 0.89959 0.88919 0.91913 0.90426 0.93670 0.78062 0.93482 0.92636 0.93643 0.90867 0.89465 0.89968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.36 10.24 37.16 0.38 -0.98 16 2 C 0.11 0.99 6.99 -4.04 -0.03 0.96 16 3 N -0.27 -3.51 3.38 -57.37 -0.19 -3.70 16 4 N -0.07 -1.01 13.14 60.35 0.79 -0.22 16 5 N -0.27 -4.25 12.35 33.51 0.41 -3.83 16 6 C 0.03 0.38 7.30 -82.39 -0.60 -0.23 16 7 C -0.07 -0.90 10.28 36.01 0.37 -0.53 16 8 C -0.05 -0.74 4.67 -82.33 -0.38 -1.12 16 9 C 0.59 9.12 6.71 -12.60 -0.08 9.04 16 10 O -0.53 -9.38 16.54 5.26 0.09 -9.29 16 11 N -0.58 -8.68 2.98 -174.38 -0.52 -9.20 16 12 C 0.11 1.74 6.10 -3.72 -0.02 1.71 16 13 C -0.15 -2.23 5.78 -26.61 -0.15 -2.38 16 14 C 0.18 3.00 2.53 -67.88 -0.17 2.83 16 15 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 16 N -0.72 -15.39 3.64 -53.38 -0.19 -15.58 16 17 C -0.24 -5.99 9.93 -15.06 -0.15 -6.14 16 18 H 0.07 1.72 7.83 -52.48 -0.41 1.31 16 19 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 20 N -0.93 -26.07 13.06 55.49 0.72 -25.34 16 21 Si 0.90 21.17 29.55 -169.99 -5.02 16.15 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 C -0.11 -1.55 2.66 -90.72 -0.24 -1.79 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 C -0.14 -1.96 9.05 37.16 0.34 -1.63 16 28 C 0.12 1.78 5.38 -3.93 -0.02 1.76 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.10 0.95 7.38 -51.93 -0.38 0.57 16 33 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.08 0.96 8.02 -51.93 -0.42 0.54 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.09 1.68 7.74 -51.93 -0.40 1.28 16 38 H 0.06 0.92 6.31 -51.93 -0.33 0.59 16 39 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.04 0.56 7.77 -51.92 -0.40 0.16 16 41 H 0.38 8.87 5.93 -40.82 -0.24 8.63 16 42 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 43 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.07 1.25 7.54 -51.93 -0.39 0.86 16 46 H 0.09 1.29 7.04 -51.93 -0.37 0.93 16 47 H 0.08 1.39 6.64 -51.93 -0.34 1.05 16 LS Contribution 379.09 15.07 5.71 5.71 Total: -1.00 -30.05 379.09 -6.54 -36.58 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -7.47 Total: 7.53 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -0.87 Total: 1.19 kcal Atomic # 7 Polarization: -58.90 SS G_CDS: 1.02 Total: -57.88 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.09 Total: -9.29 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.05 -6.54 -36.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036064421.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.547 kcal (2) G-P(sol) polarization free energy of solvation -30.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds