Wall clock time and date at job start Tue Mar 31 2020 12:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46495 * 109.47134 * 2 1 4 4 N 1.28522 * 124.44559 * 89.97513 * 3 2 1 5 5 C 1.31131 * 109.06309 * 180.02562 * 4 3 2 6 6 C 1.50699 * 127.11423 * 179.97438 * 5 4 3 7 7 C 1.40924 * 105.77405 * 0.02562 * 5 4 3 8 8 C 1.47801 * 127.24011 * 179.97438 * 7 5 4 9 9 O 1.21566 * 119.99687 * 353.72084 * 8 7 5 10 10 N 1.34774 * 120.00671 * 173.71429 * 8 7 5 11 11 C 1.46919 * 120.63403 * 173.21549 * 10 8 7 12 12 C 1.53192 * 108.77902 * 126.37439 * 11 10 8 13 13 C 1.53041 * 109.31286 * 54.63308 * 12 11 10 14 14 H 1.09002 * 109.45479 * 178.63356 * 13 12 11 15 15 N 1.46493 * 109.45887 * 58.65708 * 13 12 11 16 16 C 1.36936 * 120.00035 * 85.00229 * 15 13 12 17 17 H 1.08009 * 119.99989 * 359.97438 * 16 15 13 18 18 C 1.38807 * 120.00440 * 179.97438 * 16 15 13 19 19 N 1.31624 * 119.99877 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00296 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47484 * 180.02562 * 20 18 16 22 22 H 1.48504 * 109.47118 * 299.99732 * 20 18 16 23 23 H 1.48498 * 109.47317 * 59.99861 * 20 18 16 24 24 C 1.53046 * 109.53403 * 298.63664 * 13 12 11 25 25 H 1.08990 * 109.50034 * 301.41008 * 24 13 12 26 26 C 1.53004 * 109.49333 * 181.31592 * 24 13 12 27 27 C 1.46925 * 120.62594 * 353.19545 * 10 8 7 28 28 N 1.28594 * 124.44531 * 270.32027 * 3 2 1 29 29 H 1.09002 * 109.46809 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47028 * 299.99591 * 1 2 3 31 31 H 1.08996 * 109.47127 * 59.99866 * 1 2 3 32 32 H 1.08998 * 109.46896 * 240.00008 * 2 1 3 33 33 H 1.08996 * 109.47127 * 120.00134 * 2 1 3 34 34 H 1.09004 * 109.46764 * 270.02543 * 6 5 4 35 35 H 1.09001 * 109.47000 * 30.02277 * 6 5 4 36 36 H 1.08993 * 109.46832 * 150.02681 * 6 5 4 37 37 H 1.09000 * 109.58596 * 6.58243 * 11 10 8 38 38 H 1.09004 * 109.58628 * 246.16135 * 11 10 8 39 39 H 1.09006 * 109.49380 * 294.68465 * 12 11 10 40 40 H 1.08998 * 109.49667 * 174.58950 * 12 11 10 41 41 H 0.97002 * 120.00299 * 264.99907 * 15 13 12 42 42 H 0.96997 * 119.99780 * 180.02562 * 19 18 16 43 43 H 1.09001 * 109.46758 * 60.00194 * 26 24 13 44 44 H 1.08994 * 109.47165 * 180.02562 * 26 24 13 45 45 H 1.08998 * 109.47413 * 300.00561 * 26 24 13 46 46 H 1.08994 * 109.59197 * 353.41530 * 27 10 8 47 47 H 1.08997 * 109.58663 * 113.84183 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2602 2.0667 1.0599 5 6 2.6813 3.2589 0.7120 6 6 3.0787 4.3864 1.6295 7 6 2.6842 3.2681 -0.6972 8 6 3.0774 4.3835 -1.5835 9 8 3.3396 5.4723 -1.1106 10 7 3.1456 4.1937 -2.9161 11 6 3.3893 5.3245 -3.8219 12 6 4.5878 4.9909 -4.7157 13 6 4.3342 3.6596 -5.4266 14 1 5.1750 3.4319 -6.0819 15 7 3.1078 3.7569 -6.2219 16 6 3.1526 4.2746 -7.4888 17 1 4.0922 4.6115 -7.9016 18 6 1.9907 4.3664 -8.2427 19 7 0.8457 3.9562 -7.7396 20 14 2.0518 5.0732 -9.9707 21 1 0.6883 5.0621 -10.5586 22 1 2.5557 6.4691 -9.9170 23 1 2.9600 4.2511 -10.8100 24 6 4.1814 2.5459 -4.3880 25 1 5.0840 2.4894 -3.7797 26 6 3.9605 1.2101 -5.1005 27 6 2.9781 2.8518 -3.4905 28 7 2.2552 2.0689 -1.0605 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.2053 5.0000 1.8504 35 1 3.4787 3.9764 2.5569 36 1 3.8395 4.9982 1.1448 37 1 3.6061 6.2195 -3.2388 38 1 2.5079 5.4935 -4.4406 39 1 5.4867 4.9114 -4.1042 40 1 4.7198 5.7796 -5.4565 41 1 2.2639 3.4546 -5.8511 42 1 0.0339 4.0200 -8.2665 43 1 4.8156 0.9943 -5.7411 44 1 3.8513 0.4173 -4.3605 45 1 3.0570 1.2670 -5.7075 46 1 2.9237 2.1153 -2.6889 47 1 2.0633 2.8191 -4.0822 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036318421.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:39 Heat of formation + Delta-G solvation = 90.690424 kcal Electronic energy + Delta-G solvation = -28565.144715 eV Core-core repulsion = 24786.287078 eV Total energy + Delta-G solvation = -3778.857638 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.72969 -39.80292 -37.66872 -35.25113 -34.32143 -33.07519 -32.59256 -31.80517 -31.11915 -29.24970 -28.07270 -26.16683 -25.80118 -24.30713 -23.40735 -22.55863 -21.66866 -20.98213 -19.88533 -18.38708 -17.40113 -17.25412 -16.79550 -16.66397 -15.63870 -14.96855 -14.80908 -14.46881 -14.30192 -14.09948 -13.85818 -13.61589 -13.51312 -13.15430 -13.01577 -12.80172 -12.69991 -12.54223 -12.40331 -12.08298 -11.87356 -11.76285 -11.55003 -11.34251 -11.11864 -10.88885 -10.83944 -10.60648 -10.47133 -10.33958 -10.25114 -10.12825 -9.89877 -9.68644 -9.39622 -9.26313 -8.88784 -8.15903 -6.94159 -5.76399 -3.04328 1.31824 1.88624 2.01199 3.23742 3.39277 3.44075 3.49331 3.49496 3.83008 4.47426 4.48739 4.60000 4.68000 4.74694 4.83036 5.15715 5.25049 5.30730 5.37381 5.41736 5.47098 5.61404 5.63685 5.67510 5.68925 5.71202 5.86267 5.87566 5.89854 5.94911 6.05294 6.17223 6.25981 6.29447 6.39040 6.47460 6.55367 6.64162 6.68401 6.76810 6.83771 6.99225 7.07580 7.70441 7.71118 8.09048 8.37304 8.42381 9.53903 10.11082 10.46369 11.46080 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.016210 B = 0.003681 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.944812 B = 7605.833149 C = 8375.249658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.133 3.867 3 N -0.146 5.146 4 N -0.294 5.294 5 C 0.057 3.943 6 C -0.065 4.065 7 C -0.038 4.038 8 C 0.602 3.398 9 O -0.539 6.539 10 N -0.584 5.584 11 C 0.120 3.880 12 C -0.148 4.148 13 C 0.178 3.822 14 H 0.050 0.950 15 N -0.718 5.718 16 C -0.237 4.237 17 H 0.069 0.931 18 C -0.011 4.011 19 N -0.933 5.933 20 Si 0.904 3.096 21 H -0.292 1.292 22 H -0.287 1.287 23 H -0.287 1.287 24 C -0.108 4.108 25 H 0.063 0.937 26 C -0.135 4.135 27 C 0.095 3.905 28 N -0.242 5.242 29 H 0.087 0.913 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.112 0.888 33 H 0.109 0.891 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.048 0.952 40 H 0.074 0.926 41 H 0.384 0.616 42 H 0.255 0.745 43 H 0.052 0.948 44 H 0.041 0.959 45 H 0.071 0.929 46 H 0.113 0.887 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.024 -8.190 17.536 19.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.014 3.986 3 N -0.048 5.048 4 N -0.135 5.135 5 C -0.107 4.107 6 C -0.124 4.124 7 C -0.200 4.200 8 C 0.387 3.613 9 O -0.416 6.416 10 N -0.314 5.314 11 C -0.001 4.001 12 C -0.189 4.189 13 C 0.067 3.933 14 H 0.068 0.932 15 N -0.360 5.360 16 C -0.368 4.368 17 H 0.087 0.913 18 C -0.207 4.207 19 N -0.582 5.582 20 Si 0.736 3.264 21 H -0.218 1.218 22 H -0.214 1.214 23 H -0.214 1.214 24 C -0.128 4.128 25 H 0.081 0.919 26 C -0.193 4.193 27 C -0.028 4.028 28 N -0.089 5.089 29 H 0.105 0.895 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.130 0.870 33 H 0.127 0.873 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.112 0.888 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.067 0.933 40 H 0.093 0.907 41 H 0.219 0.781 42 H 0.064 0.936 43 H 0.071 0.929 44 H 0.060 0.940 45 H 0.090 0.910 46 H 0.130 0.870 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.721 -8.836 17.589 19.871 hybrid contribution -0.124 0.959 -1.085 1.453 sum 2.597 -7.877 16.504 18.471 Atomic orbital electron populations 1.22198 0.92881 1.04022 1.03940 1.22084 0.96285 0.74213 1.06005 1.48300 1.43759 1.13322 0.99416 1.73886 1.18764 1.05342 1.15539 1.23221 1.00940 0.93842 0.92670 1.20183 1.02817 0.92767 0.96602 1.23055 1.08991 0.93707 0.94277 1.16728 0.77848 0.85358 0.81386 1.90740 1.51202 1.24780 1.74853 1.47954 1.68436 1.10323 1.04724 1.21648 0.99917 0.87641 0.90894 1.22518 0.96160 1.01756 0.98505 1.20233 0.91380 0.90798 0.90856 0.93219 1.42456 1.04645 1.74981 1.13952 1.19186 0.93812 1.33142 0.90639 0.91322 1.24684 0.95533 1.02115 0.98402 1.69641 0.98201 1.53110 1.37227 0.86314 0.76394 0.78923 0.84810 1.21842 1.21362 1.21412 1.21704 0.97524 0.96714 0.96875 0.91884 1.21644 1.03186 0.94817 0.99621 1.22443 0.98818 0.83096 0.98470 1.74391 1.15388 1.04547 1.14621 0.89457 0.91456 0.91016 0.87005 0.87271 0.90153 0.90906 0.88790 0.90145 0.89794 0.93335 0.90733 0.78114 0.93550 0.92876 0.94005 0.91008 0.87025 0.90627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.15 10.24 37.16 0.38 -0.77 16 2 C 0.13 0.99 7.24 -4.04 -0.03 0.96 16 3 N -0.15 -1.78 3.94 -10.62 -0.04 -1.82 16 4 N -0.29 -3.88 12.01 33.92 0.41 -3.47 16 5 C 0.06 0.80 7.39 -81.88 -0.61 0.19 16 6 C -0.06 -0.73 9.95 36.01 0.36 -0.38 16 7 C -0.04 -0.60 6.88 -82.68 -0.57 -1.16 16 8 C 0.60 10.57 7.69 -12.35 -0.09 10.47 16 9 O -0.54 -10.19 14.71 5.31 0.08 -10.11 16 10 N -0.58 -10.25 2.97 -173.90 -0.52 -10.77 16 11 C 0.12 2.22 6.18 -3.71 -0.02 2.20 16 12 C -0.15 -2.67 5.78 -26.61 -0.15 -2.82 16 13 C 0.18 3.40 2.53 -67.89 -0.17 3.23 16 14 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 15 N -0.72 -16.75 3.64 -53.39 -0.19 -16.94 16 16 C -0.24 -6.25 9.93 -15.06 -0.15 -6.40 16 17 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 18 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 19 N -0.93 -27.25 13.06 55.49 0.72 -26.53 16 20 Si 0.90 21.99 29.55 -169.99 -5.02 16.96 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 C -0.11 -1.78 2.67 -90.49 -0.24 -2.02 16 25 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 26 C -0.13 -2.11 9.05 37.16 0.34 -1.78 16 27 C 0.10 1.59 5.12 -3.71 -0.02 1.57 16 28 N -0.24 -3.49 8.65 33.42 0.29 -3.20 16 29 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.11 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.11 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.09 1.14 6.91 -51.93 -0.36 0.78 16 37 H 0.08 1.45 7.00 -51.93 -0.36 1.09 16 38 H 0.08 1.75 7.74 -51.93 -0.40 1.35 16 39 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 41 H 0.38 9.56 5.93 -40.82 -0.24 9.32 16 42 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 43 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.07 1.31 7.54 -51.93 -0.39 0.92 16 46 H 0.11 1.74 4.18 -63.90 -0.27 1.47 16 47 H 0.08 1.43 6.64 -51.93 -0.34 1.08 16 LS Contribution 373.86 15.07 5.63 5.63 Total: -1.00 -31.49 373.86 -7.13 -38.62 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -7.41 Total: 8.76 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -1.08 Total: 2.88 kcal Atomic # 7 Polarization: -63.41 SS G_CDS: 0.67 Total: -62.74 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.08 Total: -10.11 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.49 -7.13 -38.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036318421.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.306 kcal (2) G-P(sol) polarization free energy of solvation -31.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds