Wall clock time and date at job start Tue Mar 31 2020 12:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46982 * 2 1 4 4 C 1.52997 * 109.47143 * 239.99669 * 2 1 3 5 5 N 1.46506 * 109.47035 * 119.99504 * 2 1 3 6 6 C 1.34584 * 125.74646 * 75.00338 * 5 2 1 7 7 N 1.30873 * 107.62507 * 179.97438 * 6 5 2 8 8 C 1.34545 * 107.26806 * 0.02562 * 7 6 5 9 9 C 1.47868 * 126.05067 * 180.02562 * 8 7 6 10 10 O 1.21552 * 120.00586 * 179.97438 * 9 8 7 11 11 N 1.34780 * 119.99710 * 359.97134 * 9 8 7 12 12 C 1.46494 * 120.00185 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.47644 * 180.02562 * 12 11 9 14 14 H 1.09007 * 112.84721 * 316.19925 * 13 12 11 15 15 C 1.53777 * 113.61566 * 87.49978 * 13 12 11 16 16 C 1.53781 * 87.08044 * 139.98690 * 15 13 12 17 17 H 1.08997 * 113.69304 * 89.12660 * 16 15 13 18 18 N 1.46497 * 113.61518 * 220.02084 * 16 15 13 19 19 C 1.36940 * 120.00043 * 252.49657 * 18 16 15 20 20 H 1.07997 * 120.00132 * 0.02562 * 19 18 16 21 21 C 1.38814 * 119.99991 * 179.97438 * 19 18 16 22 22 N 1.31614 * 120.00067 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99682 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47592 * 60.00081 * 23 21 19 25 25 H 1.48507 * 109.46902 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47186 * 299.99518 * 23 21 19 27 27 C 1.53775 * 113.61683 * 185.00304 * 13 12 11 28 28 N 1.28849 * 125.74795 * 254.69120 * 5 2 1 29 29 H 1.09004 * 109.47059 * 299.99867 * 1 2 3 30 30 H 1.08992 * 109.47060 * 60.00351 * 1 2 3 31 31 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46812 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.46935 * 299.99733 * 3 2 1 34 34 H 1.08992 * 109.47061 * 59.99708 * 3 2 1 35 35 H 1.08996 * 109.46952 * 299.99863 * 4 2 1 36 36 H 1.09002 * 109.47153 * 60.00035 * 4 2 1 37 37 H 1.09001 * 109.46832 * 179.97438 * 4 2 1 38 38 H 1.08001 * 126.18491 * 0.02562 * 6 5 2 39 39 H 0.97004 * 119.99643 * 0.02562 * 11 9 8 40 40 H 1.09002 * 109.47245 * 300.00306 * 12 11 9 41 41 H 1.08998 * 109.47126 * 60.00249 * 12 11 9 42 42 H 1.09006 * 113.61877 * 254.53278 * 15 13 12 43 43 H 1.09002 * 113.61300 * 25.43734 * 15 13 12 44 44 H 0.97000 * 119.99843 * 72.49422 * 18 16 15 45 45 H 0.97000 * 120.00381 * 179.97438 * 22 21 19 46 46 H 1.08997 * 113.61571 * 334.56557 * 27 13 12 47 47 H 1.09003 * 113.61744 * 105.38582 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0184 -0.6905 1.1963 6 6 2.0139 -2.0220 1.3924 7 7 2.5283 -2.2502 2.5740 8 6 2.8497 -1.0573 3.1068 9 6 3.4613 -0.8336 4.4344 10 8 3.7072 0.2967 4.8077 11 7 3.7461 -1.8831 5.2306 12 6 4.3516 -1.6616 6.5460 13 6 4.5708 -3.0075 7.2399 14 1 3.7172 -3.6783 7.1417 15 6 5.9170 -3.6661 6.8954 16 6 6.0039 -4.0791 8.3742 17 1 5.5436 -5.0438 8.5873 18 7 7.3490 -3.9531 8.9407 19 6 8.0868 -5.0751 9.2091 20 1 7.6772 -6.0528 9.0028 21 6 9.3616 -4.9557 9.7453 22 7 9.8614 -3.7641 9.9954 23 14 10.3682 -6.4862 10.1108 24 1 10.5772 -7.2526 8.8561 25 1 11.6838 -6.0904 10.6746 26 1 9.6437 -7.3323 11.0928 27 6 5.0913 -2.8799 8.6812 28 7 2.5296 -0.1258 2.2355 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.6767 -1.7489 -1.2491 36 1 1.6767 -0.2075 -2.1392 37 1 3.1300 -0.7209 -1.2494 38 1 1.6522 -2.7674 0.6996 39 1 3.5502 -2.7852 4.9325 40 1 5.3094 -1.1555 6.4246 41 1 3.6885 -1.0439 7.1518 42 1 5.8280 -4.5098 6.2110 43 1 6.6866 -2.9552 6.5947 44 1 7.7171 -3.0749 9.1256 45 1 10.7520 -3.6806 10.3704 46 1 5.6352 -1.9541 8.8687 47 1 4.3353 -3.0875 9.4385 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086196887.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:05 Heat of formation + Delta-G solvation = 80.837676 kcal Electronic energy + Delta-G solvation = -26174.444132 eV Core-core repulsion = 22395.159247 eV Total energy + Delta-G solvation = -3779.284885 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.191 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.78098 -39.61971 -38.37225 -37.71416 -34.68425 -33.31953 -32.80983 -31.34198 -30.20412 -28.22186 -28.12106 -27.59452 -25.02321 -24.65213 -23.56807 -23.29658 -21.00587 -20.63431 -20.45905 -19.05177 -18.02671 -17.02034 -16.88519 -16.80191 -16.16158 -15.34167 -15.19444 -14.84286 -14.69978 -14.60620 -14.38418 -13.93564 -13.48427 -13.38106 -13.26679 -13.07154 -12.95946 -12.85395 -12.48735 -12.37921 -11.99194 -11.84419 -11.74687 -11.62823 -11.33714 -11.18616 -10.79160 -10.68468 -10.65649 -10.52433 -10.32481 -10.13915 -9.95997 -9.80435 -9.76591 -9.44857 -8.96633 -8.81724 -6.91551 -5.73895 -3.02495 1.21790 1.76965 1.87403 2.99356 3.32180 3.46344 3.50563 3.51770 3.70583 3.90007 3.97466 4.08328 4.36544 4.57700 4.62223 4.73351 4.86014 4.91402 4.96797 5.04651 5.05201 5.07992 5.14220 5.26475 5.30875 5.43483 5.51549 5.58724 5.62711 5.76183 5.87988 5.90781 5.99334 6.06524 6.14828 6.23162 6.31283 6.37571 6.43314 6.50665 6.67455 6.89585 7.18142 7.41929 7.72824 7.82535 8.17460 8.44771 9.55593 10.14564 10.48808 11.48460 Molecular weight = 321.19amu Principal moments of inertia in cm(-1) A = 0.027520 B = 0.001889 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.208086 B =14817.446535 C =15102.681361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.166 3.834 3 C -0.149 4.149 4 C -0.161 4.161 5 N -0.293 5.293 6 C 0.188 3.812 7 N -0.483 5.483 8 C 0.141 3.859 9 C 0.612 3.388 10 O -0.523 6.523 11 N -0.703 5.703 12 C 0.133 3.867 13 C -0.127 4.127 14 H 0.090 0.910 15 C -0.161 4.161 16 C 0.166 3.834 17 H 0.076 0.924 18 N -0.713 5.713 19 C -0.243 4.243 20 H 0.071 0.929 21 C -0.014 4.014 22 N -0.933 5.933 23 Si 0.908 3.092 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C -0.142 4.142 28 N -0.247 5.247 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.221 0.779 39 H 0.410 0.590 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.054 0.946 43 H 0.078 0.922 44 H 0.385 0.615 45 H 0.256 0.744 46 H 0.081 0.919 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.766 6.661 -25.044 34.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.084 3.916 3 C -0.207 4.207 4 C -0.219 4.219 5 N -0.090 5.090 6 C -0.107 4.107 7 N -0.208 5.208 8 C -0.139 4.139 9 C 0.393 3.607 10 O -0.396 6.396 11 N -0.355 5.355 12 C 0.010 3.990 13 C -0.146 4.146 14 H 0.108 0.892 15 C -0.202 4.202 16 C 0.053 3.947 17 H 0.094 0.906 18 N -0.351 5.351 19 C -0.375 4.375 20 H 0.089 0.911 21 C -0.210 4.210 22 N -0.581 5.581 23 Si 0.739 3.261 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.181 4.181 28 N -0.086 5.086 29 H 0.088 0.912 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.107 0.893 37 H 0.089 0.911 38 H 0.238 0.762 39 H 0.246 0.754 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.073 0.927 43 H 0.097 0.903 44 H 0.219 0.781 45 H 0.066 0.934 46 H 0.099 0.901 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -22.289 7.685 -24.392 33.924 hybrid contribution 0.452 -1.154 -0.330 1.283 sum -21.837 6.531 -24.722 33.625 Atomic orbital electron populations 1.22266 0.91671 1.03656 1.04185 1.21183 0.95333 0.94407 0.80632 1.22004 1.02693 0.92178 1.03818 1.22269 1.02814 1.01156 0.95637 1.47799 1.41332 1.06288 1.13582 1.26308 1.01658 0.86452 0.96277 1.71285 1.16465 1.25918 1.07156 1.23811 1.06355 0.85671 0.98088 1.16298 0.78272 0.85091 0.81049 1.90832 1.52815 1.22575 1.73349 1.45747 1.62344 1.09385 1.17980 1.21536 0.98283 0.97831 0.81308 1.22646 0.98824 0.95354 0.97796 0.89186 1.23950 0.94742 0.99985 1.01506 1.21524 0.86708 0.95451 0.90968 0.90647 1.42408 1.11990 1.06677 1.73988 1.19266 0.96313 0.87110 1.34778 0.91148 1.24769 0.97696 0.96587 1.01952 1.69649 1.17423 1.21013 1.49972 0.86262 0.79526 0.82355 0.77999 1.21276 1.21724 1.21271 1.23448 0.99471 1.01311 0.93908 1.74300 1.13300 1.25477 0.95483 0.91216 0.89523 0.91308 0.91186 0.90265 0.90492 0.91077 0.89262 0.91055 0.76235 0.75445 0.90849 0.91377 0.92671 0.90325 0.78063 0.93436 0.90069 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.51 8.72 37.16 0.32 -0.19 16 2 C 0.17 0.81 1.23 -131.81 -0.16 0.65 16 3 C -0.15 -0.82 8.04 37.16 0.30 -0.52 16 4 C -0.16 -0.40 8.28 37.16 0.31 -0.09 16 5 N -0.29 -2.55 3.17 -49.83 -0.16 -2.71 16 6 C 0.19 1.53 11.71 -90.48 -1.06 0.47 16 7 N -0.48 -5.66 11.09 -12.36 -0.14 -5.80 16 8 C 0.14 1.97 7.96 -156.35 -1.24 0.72 16 9 C 0.61 9.61 7.83 -12.32 -0.10 9.51 16 10 O -0.52 -9.88 17.09 5.32 0.09 -9.79 16 11 N -0.70 -9.60 5.55 -61.25 -0.34 -9.94 16 12 C 0.13 1.89 5.51 -4.04 -0.02 1.87 16 13 C -0.13 -1.79 3.75 -89.81 -0.34 -2.13 16 14 H 0.09 1.12 8.14 -51.92 -0.42 0.70 16 15 C -0.16 -2.77 7.43 -25.92 -0.19 -2.96 16 16 C 0.17 3.27 4.48 -67.12 -0.30 2.97 16 17 H 0.08 1.47 8.10 -51.93 -0.42 1.05 16 18 N -0.71 -18.08 5.40 -52.64 -0.28 -18.36 16 19 C -0.24 -6.83 9.97 -15.06 -0.15 -6.98 16 20 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 21 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 22 N -0.93 -28.53 13.06 55.49 0.72 -27.81 16 23 Si 0.91 22.60 29.55 -169.99 -5.02 17.57 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 27 C -0.14 -2.31 7.39 -25.92 -0.19 -2.50 16 28 N -0.25 -3.20 11.09 32.07 0.36 -2.85 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 31 H 0.07 0.17 8.14 -51.93 -0.42 -0.26 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.08 0.56 8.03 -51.93 -0.42 0.14 16 35 H 0.07 0.08 7.34 -51.93 -0.38 -0.30 16 36 H 0.09 0.06 8.14 -51.93 -0.42 -0.36 16 37 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.22 0.72 7.53 -52.49 -0.39 0.32 16 39 H 0.41 4.97 8.18 -40.82 -0.33 4.63 16 40 H 0.07 1.15 7.84 -51.93 -0.41 0.75 16 41 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.08 1.49 7.89 -51.93 -0.41 1.08 16 44 H 0.39 10.40 7.92 -40.82 -0.32 10.08 16 45 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 46 H 0.08 1.38 8.08 -51.93 -0.42 0.97 16 47 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 391.75 15.07 5.90 5.90 Total: -1.00 -35.68 391.75 -9.49 -45.17 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -7.70 Total: 8.28 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: -2.92 Total: 0.32 kcal Atomic # 7 Polarization: -67.62 SS G_CDS: 0.16 Total: -67.46 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.09 Total: -9.79 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.68 -9.49 -45.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086196887.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.008 kcal (2) G-P(sol) polarization free energy of solvation -35.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds