Wall clock time and date at job start Tue Mar 31 2020 13:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00286 * 2 1 4 4 H 1.48496 * 109.47262 * 264.98649 * 3 2 1 5 5 H 1.48504 * 109.46753 * 24.98814 * 3 2 1 6 6 H 1.48496 * 109.47219 * 144.98468 * 3 2 1 7 7 C 1.38812 * 119.99648 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99951 * 205.66729 * 7 2 1 9 9 N 1.36935 * 120.00380 * 25.66934 * 7 2 1 10 10 C 1.46504 * 119.99707 * 8.00789 * 9 7 2 11 11 C 1.53004 * 109.46729 * 264.11363 * 10 9 7 12 12 C 1.50706 * 109.46951 * 179.97438 * 11 10 9 13 13 O 1.20818 * 119.99882 * 0.02562 * 12 11 10 14 14 O 1.34233 * 119.99936 * 179.97438 * 12 11 10 15 15 C 1.46497 * 120.00316 * 188.00306 * 9 7 2 16 16 C 1.52999 * 109.47112 * 90.00215 * 15 9 7 17 17 C 1.52995 * 109.47111 * 180.02562 * 16 15 9 18 18 C 1.53001 * 109.47121 * 184.99824 * 17 16 15 19 19 C 1.52996 * 109.47177 * 300.00110 * 18 17 16 20 20 C 1.53006 * 109.46981 * 299.99689 * 19 18 17 21 21 C 1.52995 * 109.47357 * 300.00135 * 20 19 18 22 22 C 1.53004 * 109.47072 * 59.99834 * 21 20 19 23 23 C 1.53001 * 109.46869 * 299.99872 * 22 21 20 24 24 C 1.52992 * 109.47205 * 60.00153 * 22 21 20 25 25 C 1.52998 * 109.47458 * 64.99701 * 17 16 15 26 26 C 1.53001 * 109.46911 * 60.00149 * 20 19 18 27 27 H 0.97000 * 119.99684 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47265 * 24.10598 * 10 9 7 29 29 H 1.08994 * 109.47257 * 144.11525 * 10 9 7 30 30 H 1.08997 * 109.47098 * 299.99676 * 11 10 9 31 31 H 1.09000 * 109.47400 * 60.00389 * 11 10 9 32 32 H 0.96697 * 116.99648 * 180.02562 * 14 12 11 33 33 H 1.09002 * 109.47099 * 329.99650 * 15 9 7 34 34 H 1.09002 * 109.47046 * 210.00190 * 15 9 7 35 35 H 1.08999 * 109.47138 * 59.99517 * 16 15 9 36 36 H 1.09002 * 109.47145 * 299.99915 * 16 15 9 37 37 H 1.09004 * 109.47192 * 304.99658 * 17 16 15 38 38 H 1.09006 * 109.47013 * 59.99901 * 18 17 16 39 39 H 1.08999 * 109.47527 * 59.99832 * 19 18 17 40 40 H 1.09003 * 109.47184 * 180.02562 * 19 18 17 41 41 H 1.08996 * 109.46941 * 179.97438 * 20 19 18 42 42 H 1.09006 * 109.46968 * 300.00284 * 21 20 19 43 43 H 1.08992 * 109.47097 * 179.97438 * 21 20 19 44 44 H 1.09006 * 109.46774 * 180.02562 * 22 21 20 45 45 H 1.08993 * 109.47575 * 299.99714 * 23 22 21 46 46 H 1.09005 * 109.46779 * 179.97438 * 23 22 21 47 47 H 1.08996 * 109.47654 * 179.97438 * 24 22 21 48 48 H 1.09006 * 109.47055 * 59.99941 * 24 22 21 49 49 H 1.08993 * 109.47235 * 300.00442 * 25 17 16 50 50 H 1.08999 * 109.46925 * 179.97438 * 26 20 19 51 51 H 1.08999 * 109.47093 * 59.99651 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.6037 1.9852 -1.3947 5 1 1.3987 2.6809 0.5915 6 1 3.4908 1.4730 0.8033 7 6 2.0102 -1.2022 0.0005 8 1 3.0103 -1.2482 0.4057 9 7 1.4268 -2.3298 -0.5126 10 6 0.1468 -2.2357 -1.2189 11 6 -0.9946 -2.5514 -0.2501 12 6 -2.3115 -2.4539 -0.9764 13 8 -2.3347 -2.1624 -2.1487 14 8 -3.4586 -2.6920 -0.3212 15 6 2.0828 -3.6302 -0.3555 16 6 1.6099 -4.2864 0.9432 17 6 2.2955 -5.6442 1.1076 18 6 1.7310 -6.3548 2.3394 19 6 1.9865 -5.5006 3.5827 20 6 3.4923 -5.2937 3.7587 21 6 4.1779 -6.6516 3.9231 22 6 3.9222 -7.5058 2.6797 23 6 2.4165 -7.7127 2.5039 24 6 4.4867 -6.7954 1.4479 25 6 3.8012 -5.4375 1.2835 26 6 4.0568 -4.5832 2.5268 27 1 -0.4850 0.8401 0.0004 28 1 0.0216 -1.2264 -1.6112 29 1 0.1326 -2.9499 -2.0421 30 1 -0.8695 -3.5605 0.1423 31 1 -0.9805 -1.8371 0.5732 32 1 -4.2779 -2.6177 -0.8293 33 1 3.1632 -3.4902 -0.3195 34 1 1.8274 -4.2704 -1.2000 35 1 0.5296 -4.4264 0.9071 36 1 1.8653 -3.6463 1.7877 37 1 2.1134 -6.2529 0.2218 38 1 0.6582 -6.5021 2.2141 39 1 1.4981 -4.5332 3.4656 40 1 1.5847 -6.0070 4.4604 41 1 3.6743 -4.6848 4.6441 42 1 3.7756 -7.1578 4.8006 43 1 5.2505 -6.5042 4.0479 44 1 4.4103 -8.4734 2.7971 45 1 2.0143 -8.2189 3.3814 46 1 2.2344 -8.3209 1.6178 47 1 4.3051 -7.4041 0.5622 48 1 5.5595 -6.6480 1.5733 49 1 4.2034 -4.9313 0.4060 50 1 5.1294 -4.4355 2.6524 51 1 3.5684 -3.6158 2.4097 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601072321.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:12 Heat of formation + Delta-G solvation = -105.133423 kcal Electronic energy + Delta-G solvation = -29476.431334 eV Core-core repulsion = 25760.329729 eV Total energy + Delta-G solvation = -3716.101604 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.209 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.38347 -39.38424 -36.45771 -35.33616 -33.89350 -32.48107 -32.45588 -31.30109 -30.31463 -28.34719 -25.71033 -25.21785 -24.54516 -22.89769 -21.47666 -21.26668 -20.91684 -19.78571 -19.65783 -17.44044 -17.11044 -16.64527 -15.52671 -15.23948 -14.98476 -14.94973 -14.64531 -14.30125 -14.08469 -13.79636 -13.32919 -13.19764 -13.12590 -13.06682 -12.64400 -12.46320 -12.29376 -12.18890 -12.07405 -11.64852 -11.51719 -11.17597 -10.87031 -10.83089 -10.74734 -10.74521 -10.66729 -10.62536 -10.57525 -10.36669 -10.25770 -9.96140 -9.81161 -9.58704 -9.52748 -9.41364 -9.26663 -9.20593 -8.38273 -6.95615 -5.83627 -3.10048 3.10621 3.40567 3.48308 3.49580 3.93035 4.50709 4.63344 4.63947 4.67072 5.22626 5.24457 5.30233 5.33452 5.35944 5.39267 5.43810 5.50733 5.51989 5.54982 5.63739 5.79979 5.84849 5.90360 5.90905 6.00859 6.09972 6.12001 6.13624 6.15662 6.16304 6.22577 6.29144 6.30051 6.38913 6.41641 6.46561 6.50677 6.63227 6.67224 6.70577 6.74038 6.77013 6.82392 7.02377 7.14498 7.22685 7.50929 7.70508 7.84808 8.32577 8.70784 9.19955 9.84561 10.28959 11.23557 Molecular weight = 321.21amu Principal moments of inertia in cm(-1) A = 0.012403 B = 0.004383 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.965548 B = 6386.654214 C = 7794.824200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C -0.002 4.002 3 Si 0.896 3.104 4 H -0.289 1.289 5 H -0.294 1.294 6 H -0.282 1.282 7 C -0.246 4.246 8 H 0.076 0.924 9 N -0.595 5.595 10 C 0.185 3.815 11 C -0.118 4.118 12 C 0.484 3.516 13 O -0.533 6.533 14 O -0.531 6.531 15 C 0.148 3.852 16 C -0.139 4.139 17 C -0.073 4.073 18 C -0.079 4.079 19 C -0.108 4.108 20 C -0.084 4.084 21 C -0.106 4.106 22 C -0.084 4.084 23 C -0.107 4.107 24 C -0.107 4.107 25 C -0.079 4.079 26 C -0.110 4.110 27 H 0.254 0.746 28 H 0.098 0.902 29 H 0.015 0.985 30 H 0.068 0.932 31 H 0.138 0.862 32 H 0.392 0.608 33 H 0.048 0.952 34 H 0.035 0.965 35 H 0.053 0.947 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.052 0.948 41 H 0.063 0.937 42 H 0.055 0.945 43 H 0.056 0.944 44 H 0.061 0.939 45 H 0.055 0.945 46 H 0.057 0.943 47 H 0.057 0.943 48 H 0.056 0.944 49 H 0.072 0.928 50 H 0.053 0.947 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.710 -14.252 6.052 15.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.199 4.199 3 Si 0.727 3.273 4 H -0.216 1.216 5 H -0.221 1.221 6 H -0.208 1.208 7 C -0.374 4.374 8 H 0.094 0.906 9 N -0.315 5.315 10 C 0.058 3.942 11 C -0.158 4.158 12 C 0.329 3.671 13 O -0.422 6.422 14 O -0.341 6.341 15 C 0.022 3.978 16 C -0.179 4.179 17 C -0.092 4.092 18 C -0.098 4.098 19 C -0.146 4.146 20 C -0.102 4.102 21 C -0.143 4.143 22 C -0.103 4.103 23 C -0.144 4.144 24 C -0.145 4.145 25 C -0.097 4.097 26 C -0.148 4.148 27 H 0.064 0.936 28 H 0.116 0.884 29 H 0.033 0.967 30 H 0.086 0.914 31 H 0.156 0.844 32 H 0.248 0.752 33 H 0.066 0.934 34 H 0.053 0.947 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.074 0.926 46 H 0.076 0.924 47 H 0.076 0.924 48 H 0.075 0.925 49 H 0.091 0.909 50 H 0.072 0.928 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.022 -14.048 5.950 15.777 hybrid contribution -0.317 0.905 -0.142 0.969 sum 3.705 -13.143 5.809 14.839 Atomic orbital electron populations 1.69978 1.05132 1.25394 1.54405 1.24663 0.95198 0.97984 1.02024 0.86379 0.79162 0.84027 0.77748 1.21633 1.22051 1.20806 1.19279 0.97364 0.86024 1.34756 0.90625 1.44269 1.20982 1.02522 1.63689 1.20638 0.81953 1.01785 0.89780 1.22574 0.86815 1.02875 1.03556 1.24480 0.85975 0.70807 0.85882 1.90604 1.87910 1.45251 1.18420 1.84664 1.17591 1.83600 1.48287 1.20917 0.96353 0.86593 0.93971 1.22511 0.99386 0.94465 1.01527 1.21115 0.94354 0.97199 0.96527 1.21056 0.98969 0.94312 0.95454 1.21550 0.95615 1.00427 0.96987 1.21007 0.95358 0.95795 0.98044 1.21525 0.99793 0.95914 0.97095 1.21020 0.95972 0.97906 0.95365 1.21535 0.94962 0.97022 1.00886 1.21548 0.99073 0.96626 0.97242 1.21054 0.95504 0.95014 0.98172 1.21574 0.99935 0.99305 0.93947 0.93594 0.88388 0.96725 0.91428 0.84421 0.75194 0.93365 0.94706 0.92823 0.91137 0.92060 0.91702 0.91147 0.92900 0.91856 0.92606 0.92497 0.92097 0.92609 0.92399 0.92404 0.92530 0.90941 0.92818 0.90630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.34 8.62 55.49 0.48 -23.86 16 2 C 0.00 -0.05 4.89 -17.43 -0.09 -0.14 16 3 Si 0.90 21.23 29.62 -169.99 -5.04 16.20 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.25 -6.26 9.70 -15.06 -0.15 -6.40 16 8 H 0.08 1.90 7.94 -52.48 -0.42 1.49 16 9 N -0.59 -13.78 2.54 -173.23 -0.44 -14.22 16 10 C 0.18 4.37 4.21 -4.04 -0.02 4.35 16 11 C -0.12 -2.56 5.48 -27.88 -0.15 -2.71 16 12 C 0.48 10.02 8.33 36.01 0.30 10.32 16 13 O -0.53 -12.30 16.74 -18.74 -0.31 -12.61 16 14 O -0.53 -8.98 13.42 -39.26 -0.53 -9.51 16 15 C 0.15 2.81 5.46 -4.04 -0.02 2.79 16 16 C -0.14 -2.31 4.18 -26.73 -0.11 -2.42 16 17 C -0.07 -0.98 1.93 -90.62 -0.18 -1.16 16 18 C -0.08 -0.98 2.72 -90.62 -0.25 -1.23 16 19 C -0.11 -1.36 4.92 -26.73 -0.13 -1.49 16 20 C -0.08 -1.00 3.19 -90.62 -0.29 -1.29 16 21 C -0.11 -1.11 5.19 -26.73 -0.14 -1.25 16 22 C -0.08 -0.88 3.19 -90.62 -0.29 -1.17 16 23 C -0.11 -1.15 5.19 -26.73 -0.14 -1.29 16 24 C -0.11 -1.19 5.19 -26.73 -0.14 -1.33 16 25 C -0.08 -1.02 2.48 -90.62 -0.22 -1.24 16 26 C -0.11 -1.45 4.92 -26.73 -0.13 -1.59 16 27 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 28 H 0.10 2.67 5.81 -51.93 -0.30 2.37 16 29 H 0.01 0.33 7.93 -51.93 -0.41 -0.08 16 30 H 0.07 1.34 5.97 -51.93 -0.31 1.03 16 31 H 0.14 3.36 6.33 -51.93 -0.33 3.03 16 32 H 0.39 4.70 9.10 45.56 0.41 5.11 16 33 H 0.05 0.90 6.45 -51.93 -0.33 0.57 16 34 H 0.03 0.63 7.95 -51.93 -0.41 0.22 16 35 H 0.05 0.94 5.92 -51.93 -0.31 0.63 16 36 H 0.07 1.29 4.82 -51.93 -0.25 1.04 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 1.00 6.54 -51.93 -0.34 0.66 16 40 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 47 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.07 1.00 6.56 -51.93 -0.34 0.66 16 50 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 51 H 0.08 1.17 6.32 -51.93 -0.33 0.84 16 LS Contribution 367.13 15.07 5.53 5.53 Total: -1.00 -28.08 367.13 -10.32 -38.40 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -7.88 Total: 7.32 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: -2.14 Total: -7.25 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: 0.04 Total: -38.07 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.84 Total: -22.12 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.04 Total: 16.20 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -28.08 -10.32 -38.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072321.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.732 kcal (2) G-P(sol) polarization free energy of solvation -28.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds