Wall clock time and date at job start Tue Mar 31 2020 13:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47062 * 2 1 4 4 O 1.42907 * 109.46915 * 180.02562 * 3 2 1 5 5 C 1.35998 * 116.99844 * 179.97438 * 4 3 2 6 6 C 1.38563 * 120.07515 * 359.72796 * 5 4 3 7 7 C 1.38235 * 120.00022 * 179.74475 * 6 5 4 8 8 C 1.38256 * 120.14718 * 0.50692 * 7 6 5 9 9 C 1.50699 * 119.93032 * 179.74793 * 8 7 6 10 10 N 1.46896 * 109.46887 * 264.43403 * 9 8 7 11 11 C 1.46904 * 110.99996 * 75.80985 * 10 9 8 12 12 C 1.50701 * 109.47294 * 189.99630 * 11 10 9 13 13 H 1.08003 * 119.99751 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00098 * 179.97438 * 12 11 10 15 15 N 1.31511 * 119.99776 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99992 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47009 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47027 * 120.00113 * 16 14 12 19 19 H 1.48500 * 109.46959 * 239.99757 * 16 14 12 20 20 C 1.46904 * 111.00010 * 199.75692 * 10 9 8 21 21 C 1.53009 * 109.46726 * 75.76032 * 20 10 9 22 22 C 1.52993 * 109.47097 * 174.87622 * 21 20 10 23 23 C 1.38249 * 120.14321 * 359.76841 * 8 7 6 24 24 C 1.38559 * 119.99741 * 359.97438 * 23 8 7 25 25 O 1.36000 * 120.07215 * 180.02562 * 24 23 8 26 26 C 1.42905 * 116.99873 * 359.97138 * 25 24 23 27 27 H 1.08996 * 109.47174 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46941 * 300.00312 * 1 2 3 29 29 H 1.08998 * 109.47200 * 59.99685 * 1 2 3 30 30 H 1.09001 * 109.46941 * 239.99688 * 2 1 3 31 31 H 1.08998 * 109.47200 * 120.00315 * 2 1 3 32 32 H 1.08994 * 109.47442 * 299.99724 * 3 2 1 33 33 H 1.08997 * 109.47574 * 60.00506 * 3 2 1 34 34 H 1.08004 * 120.00160 * 359.97438 * 6 5 4 35 35 H 1.07999 * 119.93478 * 180.25624 * 7 6 5 36 36 H 1.08998 * 109.46959 * 24.43273 * 9 8 7 37 37 H 1.08999 * 109.47085 * 144.43620 * 9 8 7 38 38 H 1.09003 * 109.46853 * 309.99652 * 11 10 9 39 39 H 1.09004 * 109.47295 * 69.99532 * 11 10 9 40 40 H 0.97007 * 120.00224 * 180.02562 * 15 14 12 41 41 H 1.08996 * 109.47225 * 195.75810 * 20 10 9 42 42 H 1.08997 * 109.47503 * 315.76399 * 20 10 9 43 43 H 1.08998 * 109.46716 * 294.87727 * 21 20 10 44 44 H 1.09001 * 109.46735 * 54.87331 * 21 20 10 45 45 H 1.09000 * 109.47192 * 179.97438 * 22 21 20 46 46 H 1.08999 * 109.47164 * 300.00153 * 22 21 20 47 47 H 1.09005 * 109.47243 * 59.99851 * 22 21 20 48 48 H 1.08002 * 120.00018 * 180.02562 * 23 8 7 49 49 H 1.09002 * 109.47486 * 300.00704 * 26 25 24 50 50 H 1.08999 * 109.46849 * 60.00132 * 26 25 24 51 51 H 1.08994 * 109.47257 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4691 1.4424 -0.0006 5 6 4.0865 2.6542 -0.0012 6 6 3.3334 3.8172 -0.0069 7 6 3.9625 5.0481 -0.0022 8 6 5.3431 5.1222 -0.0024 9 6 6.0239 6.4667 -0.0030 10 7 6.3648 6.8422 -1.3816 11 6 5.1728 7.2869 -2.1162 12 6 5.5075 7.4277 -3.5788 13 1 6.5058 7.2084 -3.9278 14 6 4.5391 7.8355 -4.4715 15 7 3.3232 8.1011 -4.0466 16 14 4.9539 8.0094 -6.2845 17 1 6.3786 7.6519 -6.5029 18 1 4.0888 7.1012 -7.0795 19 1 4.7238 9.4126 -6.7126 20 6 7.4112 7.8731 -1.4030 21 6 8.7640 7.2331 -1.0845 22 6 9.8704 8.2795 -1.2318 23 6 6.1004 3.9656 -0.0024 24 6 5.4760 2.7287 -0.0018 25 8 6.2195 1.5900 -0.0013 26 6 7.6404 1.7429 -0.0021 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6768 1.9563 -0.8899 33 1 1.6768 1.9563 0.8900 34 1 2.2547 3.7621 -0.0113 35 1 3.3744 5.9539 -0.0025 36 1 5.3533 7.2136 0.4218 37 1 6.9339 6.4134 0.5946 38 1 4.3763 6.5526 -1.9948 39 1 4.8426 8.2491 -1.7247 40 1 2.6417 8.3876 -4.6747 41 1 7.4496 8.3313 -2.3912 42 1 7.1854 8.6355 -0.6575 43 1 8.7553 6.8549 -0.0623 44 1 8.9480 6.4100 -1.7750 45 1 10.8341 7.8238 -1.0045 46 1 9.8790 8.6578 -2.2540 47 1 9.6863 9.1027 -0.5413 48 1 7.1787 4.0262 -0.0021 49 1 7.9462 2.2921 -0.8926 50 1 7.9470 2.2933 0.8873 51 1 8.1116 0.7601 -0.0021 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000046437921.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:02 Heat of formation + Delta-G solvation = -64.255550 kcal Electronic energy + Delta-G solvation = -27730.674490 eV Core-core repulsion = 24016.345483 eV Total energy + Delta-G solvation = -3714.329007 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.209 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.30131 -38.37841 -37.72072 -36.13168 -33.99107 -33.08423 -32.27301 -30.31808 -29.88403 -27.55954 -27.04168 -26.66300 -25.36604 -23.84570 -22.56482 -21.43951 -21.20331 -20.87474 -19.71581 -18.14885 -16.92992 -16.43242 -16.27727 -16.20317 -15.42531 -15.04371 -14.64835 -14.56905 -14.52158 -14.18336 -14.01968 -13.72817 -13.68396 -13.25478 -12.95381 -12.49317 -12.44211 -12.25988 -12.15748 -11.98401 -11.71652 -11.56033 -11.38140 -11.35408 -11.30121 -11.08113 -10.83259 -10.78582 -10.77262 -10.66448 -10.59841 -10.43670 -10.28909 -10.01328 -9.67664 -9.14233 -8.42487 -8.30875 -7.45000 -7.20108 -6.00790 -4.00778 1.66429 1.80790 3.31581 3.32816 3.39239 3.43930 3.50242 4.04427 4.45356 4.77644 4.78585 5.00011 5.06818 5.09023 5.20822 5.23674 5.30576 5.32250 5.35111 5.36652 5.42935 5.45562 5.49803 5.57242 5.60644 5.65532 5.75028 5.78205 5.84003 5.87161 5.93477 5.98256 6.03273 6.07620 6.18950 6.25939 6.27488 6.44270 6.49746 6.64857 6.72613 6.83921 7.01350 7.06237 7.29825 7.35381 7.37291 7.83324 7.85820 8.13414 8.24327 8.57539 9.06805 9.62861 11.10202 Molecular weight = 321.21amu Principal moments of inertia in cm(-1) A = 0.009272 B = 0.003891 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3019.237462 B = 7195.180073 C = 9144.087783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C 0.057 3.943 4 O -0.310 6.310 5 C 0.092 3.908 6 C -0.171 4.171 7 C -0.099 4.099 8 C -0.054 4.054 9 C 0.092 3.908 10 N -0.531 5.531 11 C 0.191 3.809 12 C -0.503 4.503 13 H 0.063 0.937 14 C 0.056 3.944 15 N -0.898 5.898 16 Si 0.894 3.106 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.285 1.285 20 C 0.061 3.939 21 C -0.118 4.118 22 C -0.149 4.149 23 C -0.149 4.149 24 C 0.091 3.909 25 O -0.312 6.312 26 C 0.028 3.972 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.130 0.870 35 H 0.125 0.875 36 H 0.035 0.965 37 H 0.068 0.932 38 H 0.037 0.963 39 H -0.012 1.012 40 H 0.259 0.741 41 H 0.087 0.913 42 H 0.018 0.982 43 H 0.049 0.951 44 H 0.067 0.933 45 H 0.047 0.953 46 H 0.054 0.946 47 H 0.048 0.952 48 H 0.132 0.868 49 H 0.056 0.944 50 H 0.051 0.949 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.549 -10.987 11.485 16.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.018 4.018 4 O -0.224 6.224 5 C 0.046 3.954 6 C -0.190 4.190 7 C -0.118 4.118 8 C -0.055 4.055 9 C -0.036 4.036 10 N -0.256 5.256 11 C 0.066 3.934 12 C -0.542 4.542 13 H 0.081 0.919 14 C -0.145 4.145 15 N -0.538 5.538 16 Si 0.722 3.278 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.212 1.212 20 C -0.067 4.067 21 C -0.156 4.156 22 C -0.207 4.207 23 C -0.168 4.168 24 C 0.046 3.954 25 O -0.226 6.226 26 C -0.067 4.067 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.147 0.853 35 H 0.143 0.857 36 H 0.053 0.947 37 H 0.086 0.914 38 H 0.055 0.945 39 H 0.006 0.994 40 H 0.069 0.931 41 H 0.105 0.895 42 H 0.036 0.964 43 H 0.068 0.932 44 H 0.085 0.915 45 H 0.066 0.934 46 H 0.074 0.926 47 H 0.067 0.933 48 H 0.149 0.851 49 H 0.075 0.925 50 H 0.069 0.931 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.575 -11.726 11.176 16.402 hybrid contribution -0.280 1.254 -0.753 1.489 sum 2.296 -10.472 10.423 14.952 Atomic orbital electron populations 1.21693 0.94471 1.02255 1.02277 1.21452 0.95786 0.95156 1.03546 1.22817 0.79253 0.98403 1.01337 1.86093 1.20409 1.26414 1.89484 1.18099 0.88971 0.84818 1.03472 1.20961 0.99563 0.91528 1.06932 1.20826 0.94151 0.97032 0.99749 1.19519 0.92959 0.94744 0.98255 1.20982 0.98022 0.92230 0.92338 1.62123 1.12385 1.40784 1.10271 1.19799 0.86820 0.93951 0.92867 1.21197 0.97109 1.43970 0.91936 0.91906 1.24956 0.94980 0.95700 0.98879 1.69962 1.02419 1.46792 1.34638 0.86505 0.78554 0.77498 0.85269 1.19673 1.21062 1.21158 1.22052 0.90564 0.92393 1.01732 1.21547 0.94676 0.98609 1.00815 1.21730 0.98063 0.99130 1.01749 1.20820 1.00065 0.90294 1.05595 1.18142 0.88018 0.85901 1.03367 1.86115 1.18317 1.28584 1.89543 1.22998 0.79146 1.03213 1.01370 0.91946 0.92448 0.92265 0.90885 0.91042 0.92063 0.92362 0.85267 0.85659 0.94723 0.91373 0.94460 0.99419 0.93090 0.89499 0.96417 0.93211 0.91471 0.93372 0.92640 0.93294 0.85055 0.92509 0.93050 0.88769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.91 37.16 0.37 -0.80 16 2 C -0.12 -1.20 6.30 -26.73 -0.17 -1.37 16 3 C 0.06 0.70 4.74 37.16 0.18 0.88 16 4 O -0.31 -4.98 9.92 -34.24 -0.34 -5.32 16 5 C 0.09 1.58 6.70 -39.12 -0.26 1.31 16 6 C -0.17 -2.83 9.04 -39.46 -0.36 -3.19 16 7 C -0.10 -1.76 8.39 -39.58 -0.33 -2.09 16 8 C -0.05 -0.97 5.04 -104.61 -0.53 -1.49 16 9 C 0.09 1.66 4.94 -4.98 -0.02 1.63 16 10 N -0.53 -11.23 4.35 -237.51 -1.03 -12.26 16 11 C 0.19 4.90 4.54 -4.97 -0.02 4.88 16 12 C -0.50 -14.10 8.23 -34.44 -0.28 -14.38 16 13 H 0.06 1.76 7.31 -52.48 -0.38 1.37 16 14 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 15 N -0.90 -26.61 13.29 55.43 0.74 -25.87 16 16 Si 0.89 21.79 29.54 -169.99 -5.02 16.76 16 17 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 C 0.06 1.15 4.79 -3.82 -0.02 1.13 16 21 C -0.12 -1.81 5.98 -26.73 -0.16 -1.97 16 22 C -0.15 -1.93 9.91 37.15 0.37 -1.56 16 23 C -0.15 -2.49 8.71 -39.46 -0.34 -2.83 16 24 C 0.09 1.56 6.70 -39.12 -0.26 1.30 16 25 O -0.31 -5.01 10.28 -34.24 -0.35 -5.36 16 26 C 0.03 0.32 9.81 101.05 0.99 1.32 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.75 7.65 -51.93 -0.40 0.35 16 33 H 0.06 0.64 7.68 -51.93 -0.40 0.24 16 34 H 0.13 1.83 6.30 -52.48 -0.33 1.50 16 35 H 0.13 2.22 7.98 -52.49 -0.42 1.80 16 36 H 0.03 0.63 7.90 -51.93 -0.41 0.22 16 37 H 0.07 1.07 6.54 -51.93 -0.34 0.73 16 38 H 0.04 1.03 6.32 -51.93 -0.33 0.70 16 39 H -0.01 -0.33 8.12 -51.93 -0.42 -0.75 16 40 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 41 H 0.09 1.84 6.58 -51.93 -0.34 1.50 16 42 H 0.02 0.32 8.00 -51.93 -0.42 -0.09 16 43 H 0.05 0.70 6.89 -51.93 -0.36 0.34 16 44 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 48 H 0.13 1.95 6.30 -52.49 -0.33 1.62 16 49 H 0.06 0.66 7.66 -51.93 -0.40 0.26 16 50 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 51 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 406.53 15.07 6.13 6.13 Total: -1.00 -31.77 406.53 -9.87 -41.64 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -9.03 Total: 0.05 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: -0.95 Total: -15.76 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: -0.30 Total: -38.13 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: -0.69 Total: -10.69 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -31.77 -9.87 -41.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046437921.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.620 kcal (2) G-P(sol) polarization free energy of solvation -31.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds