Wall clock time and date at job start Tue Mar 31 2020 12:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35997 * 116.99639 * 2 1 4 4 C 1.38560 * 120.07465 * 359.72258 * 3 2 1 5 5 C 1.38245 * 119.99984 * 179.79687 * 4 3 2 6 6 C 1.38251 * 120.14506 * 0.45814 * 5 4 3 7 7 C 1.50697 * 119.92593 * 179.77046 * 6 5 4 8 8 N 1.46895 * 109.47167 * 264.42321 * 7 6 5 9 9 C 1.46905 * 111.00092 * 75.82678 * 8 7 6 10 10 C 1.50699 * 109.47130 * 189.99670 * 9 8 7 11 11 H 1.07997 * 120.00484 * 0.02562 * 10 9 8 12 12 C 1.37882 * 119.99576 * 179.97438 * 10 9 8 13 13 N 1.31518 * 119.99559 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 119.99976 * 0.02562 * 12 10 9 15 15 H 1.48503 * 109.46718 * 90.00232 * 14 12 10 16 16 H 1.48502 * 109.47059 * 209.99869 * 14 12 10 17 17 H 1.48494 * 109.47464 * 330.00144 * 14 12 10 18 18 C 1.46903 * 111.00169 * 199.78037 * 8 7 6 19 19 C 1.52995 * 109.47123 * 75.77164 * 18 8 7 20 20 C 1.53006 * 109.47302 * 175.23291 * 19 18 8 21 21 C 1.53002 * 109.47285 * 174.99812 * 20 19 18 22 22 C 1.52991 * 109.46942 * 294.99850 * 20 19 18 23 23 C 1.38243 * 120.14526 * 359.79712 * 6 5 4 24 24 C 1.38565 * 120.00175 * 359.96980 * 23 6 5 25 25 O 1.35991 * 120.07271 * 180.02562 * 24 23 6 26 26 C 1.42901 * 117.00341 * 359.97438 * 25 24 23 27 27 H 1.08992 * 109.47330 * 60.00224 * 1 2 3 28 28 H 1.08999 * 109.46875 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47207 * 299.99893 * 1 2 3 30 30 H 1.08000 * 120.00156 * 0.02562 * 4 3 2 31 31 H 1.07998 * 119.92401 * 180.21068 * 5 4 3 32 32 H 1.09002 * 109.47297 * 24.42734 * 7 6 5 33 33 H 1.09009 * 109.47007 * 144.42427 * 7 6 5 34 34 H 1.08995 * 109.46760 * 310.00130 * 9 8 7 35 35 H 1.08999 * 109.46857 * 69.99716 * 9 8 7 36 36 H 0.97000 * 119.99229 * 180.02562 * 13 12 10 37 37 H 1.08997 * 109.47346 * 195.77073 * 18 8 7 38 38 H 1.08999 * 109.47036 * 315.76834 * 18 8 7 39 39 H 1.09010 * 109.47105 * 295.22766 * 19 18 8 40 40 H 1.08998 * 109.47270 * 55.22928 * 19 18 8 41 41 H 1.09006 * 109.46905 * 54.99553 * 20 19 18 42 42 H 1.08999 * 109.46896 * 59.99564 * 21 20 19 43 43 H 1.08991 * 109.46785 * 180.02562 * 21 20 19 44 44 H 1.08999 * 109.47059 * 299.99904 * 21 20 19 45 45 H 1.09006 * 109.47283 * 59.99692 * 22 20 19 46 46 H 1.08997 * 109.47555 * 179.97438 * 22 20 19 47 47 H 1.09003 * 109.47362 * 300.00036 * 22 20 19 48 48 H 1.07999 * 119.99903 * 180.02562 * 23 6 5 49 49 H 1.09006 * 109.47189 * 59.99486 * 26 25 24 50 50 H 1.08996 * 109.47325 * 179.97438 * 26 25 24 51 51 H 1.09006 * 109.46955 * 300.00051 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2932 2.3748 -0.0058 5 6 1.9223 3.6058 -0.0016 6 6 3.3028 3.6799 -0.0011 7 6 3.9835 5.0244 -0.0017 8 7 4.3252 5.3996 -1.3801 9 6 3.1338 5.8443 -2.1155 10 6 3.4695 5.9848 -3.5779 11 1 4.4678 5.7652 -3.9264 12 6 2.5016 6.3926 -4.4713 13 7 2.7944 6.5147 -5.7476 14 14 0.7746 6.7716 -3.8687 15 1 0.6838 8.2066 -3.4973 16 1 -0.2021 6.4769 -4.9479 17 1 0.4691 5.9328 -2.6820 18 6 5.3719 6.4302 -1.4012 19 6 6.7244 5.7900 -1.0822 20 6 7.8302 6.8384 -1.2204 21 6 9.1650 6.2327 -0.7816 22 6 7.9287 7.2863 -2.6799 23 6 4.0602 2.5234 -0.0006 24 6 3.4359 1.2864 0.0000 25 8 4.1795 0.1478 0.0010 26 6 5.6003 0.3008 0.0008 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 0.2146 2.3196 -0.0099 31 1 1.3340 4.5115 -0.0026 32 1 3.3126 5.7715 0.4226 33 1 4.8931 4.9714 0.5967 34 1 2.3372 5.1103 -1.9944 35 1 2.8037 6.8067 -1.7245 36 1 2.1136 6.8019 -6.3760 37 1 5.4109 6.8884 -2.3894 38 1 5.1460 7.1928 -0.6558 39 1 6.7131 5.4062 -0.0619 40 1 6.9115 4.9709 -1.7765 41 1 7.5969 7.6977 -0.5916 42 1 9.3982 5.3735 -1.4104 43 1 9.9526 6.9797 -0.8797 44 1 9.0948 5.9136 0.2583 45 1 6.9777 7.7178 -2.9926 46 1 8.7161 8.0335 -2.7784 47 1 8.1620 6.4271 -3.3088 48 1 5.1385 2.5841 0.0002 49 1 5.9066 0.8515 0.8902 50 1 6.0716 -0.6820 0.0021 51 1 5.9065 0.8498 -0.8898 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093100892.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:25 Heat of formation + Delta-G solvation = -56.874468 kcal Electronic energy + Delta-G solvation = -28165.153070 eV Core-core repulsion = 24451.144131 eV Total energy + Delta-G solvation = -3714.008939 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.209 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.37231 -38.29363 -37.99770 -36.63386 -35.14750 -32.50844 -30.84213 -30.14160 -29.08975 -27.96068 -27.15869 -26.95579 -26.54353 -24.39634 -22.51218 -21.91393 -21.26519 -19.84981 -19.55398 -18.22468 -17.07882 -16.65608 -16.50421 -15.92499 -15.21112 -15.13092 -14.88846 -14.60234 -14.49901 -14.29642 -14.14591 -13.87208 -13.46247 -13.31121 -12.95145 -12.51749 -12.48124 -12.31596 -12.22297 -12.02910 -11.92101 -11.80571 -11.43132 -11.30428 -11.07863 -11.03563 -10.96362 -10.80610 -10.71466 -10.67364 -10.53275 -10.31108 -10.14831 -9.82571 -9.71474 -9.22575 -8.56492 -8.42233 -7.57124 -7.35284 -6.03791 -3.99878 1.55193 1.68694 3.27291 3.35404 3.36881 3.39904 3.43167 3.92726 4.42774 4.78613 4.93208 5.02838 5.11863 5.15381 5.18736 5.21317 5.25003 5.27168 5.28354 5.30360 5.35489 5.46879 5.51004 5.59312 5.65565 5.71064 5.77874 5.81984 5.86011 5.93984 6.01366 6.03334 6.08118 6.10675 6.24946 6.37693 6.40439 6.46326 6.51061 6.54187 6.75933 6.78278 6.88647 6.92642 6.95779 7.05004 7.19372 7.64459 7.75527 7.92897 8.07629 8.67572 9.05441 9.58571 11.09386 Molecular weight = 321.21amu Principal moments of inertia in cm(-1) A = 0.008029 B = 0.005051 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3486.334881 B = 5542.251106 C = 8173.497084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.311 6.311 3 C 0.089 3.911 4 C -0.171 4.171 5 C -0.106 4.106 6 C -0.054 4.054 7 C 0.090 3.910 8 N -0.520 5.520 9 C 0.160 3.840 10 C -0.504 4.504 11 H 0.081 0.919 12 C 0.069 3.931 13 N -0.900 5.900 14 Si 0.871 3.129 15 H -0.278 1.278 16 H -0.286 1.286 17 H -0.266 1.266 18 C 0.057 3.943 19 C -0.107 4.107 20 C -0.095 4.095 21 C -0.144 4.144 22 C -0.149 4.149 23 C -0.147 4.147 24 C 0.094 3.906 25 O -0.311 6.311 26 C 0.027 3.973 27 H 0.054 0.946 28 H 0.096 0.904 29 H 0.051 0.949 30 H 0.130 0.870 31 H 0.122 0.878 32 H 0.035 0.965 33 H 0.072 0.928 34 H 0.034 0.966 35 H -0.019 1.019 36 H 0.262 0.738 37 H 0.096 0.904 38 H 0.017 0.983 39 H 0.049 0.951 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.053 0.947 43 H 0.049 0.951 44 H 0.049 0.951 45 H 0.065 0.935 46 H 0.045 0.955 47 H 0.055 0.945 48 H 0.134 0.866 49 H 0.051 0.949 50 H 0.095 0.905 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.773 -7.209 14.604 16.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.225 6.225 3 C 0.044 3.956 4 C -0.190 4.190 5 C -0.125 4.125 6 C -0.055 4.055 7 C -0.038 4.038 8 N -0.244 5.244 9 C 0.034 3.966 10 C -0.543 4.543 11 H 0.099 0.901 12 C -0.133 4.133 13 N -0.540 5.540 14 Si 0.698 3.302 15 H -0.204 1.204 16 H -0.212 1.212 17 H -0.191 1.191 18 C -0.070 4.070 19 C -0.145 4.145 20 C -0.114 4.114 21 C -0.201 4.201 22 C -0.206 4.206 23 C -0.166 4.166 24 C 0.049 3.951 25 O -0.225 6.225 26 C -0.068 4.068 27 H 0.073 0.927 28 H 0.114 0.886 29 H 0.070 0.930 30 H 0.148 0.852 31 H 0.140 0.860 32 H 0.053 0.947 33 H 0.091 0.909 34 H 0.052 0.948 35 H -0.002 1.002 36 H 0.072 0.928 37 H 0.114 0.886 38 H 0.036 0.964 39 H 0.068 0.932 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.084 0.916 46 H 0.064 0.936 47 H 0.074 0.926 48 H 0.152 0.848 49 H 0.070 0.930 50 H 0.114 0.886 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.897 -7.960 14.181 16.722 hybrid contribution -1.448 1.311 0.450 2.004 sum 2.449 -6.649 14.631 16.256 Atomic orbital electron populations 1.23002 0.79106 1.03473 1.01176 1.86128 1.20589 1.26253 1.89482 1.18155 0.89097 0.84920 1.03441 1.20953 0.99591 0.91523 1.06958 1.20784 0.94174 0.96916 1.00627 1.19516 0.92893 0.94827 0.98281 1.21037 0.98323 0.92194 0.92268 1.61943 1.11357 1.40971 1.10117 1.20249 0.88544 0.93111 0.94746 1.21021 0.99424 1.44390 0.89434 0.90089 1.24878 0.98279 0.95327 0.94776 1.69894 1.34103 1.47984 1.01969 0.86923 0.85449 0.78909 0.78877 1.20434 1.21220 1.19120 1.22157 0.90365 0.92170 1.02338 1.21641 0.93877 0.98218 1.00752 1.21077 0.94859 0.98277 0.97196 1.21825 0.96980 1.00652 1.00686 1.21888 1.02007 1.01009 0.95735 1.20842 1.00215 0.90228 1.05322 1.18165 0.88055 0.85985 1.02854 1.86117 1.18468 1.28501 1.89403 1.23025 0.78948 1.03367 1.01456 0.92734 0.88600 0.93025 0.85196 0.85996 0.94733 0.90918 0.94845 1.00157 0.92760 0.88567 0.96447 0.93219 0.91212 0.91871 0.92765 0.93205 0.93209 0.91600 0.93593 0.92612 0.84845 0.92999 0.88645 0.92361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.31 -4.78 10.28 -34.23 -0.35 -5.13 16 3 C 0.09 1.46 6.70 -39.12 -0.26 1.20 16 4 C -0.17 -2.66 9.04 -39.46 -0.36 -3.02 16 5 C -0.11 -1.77 8.39 -39.57 -0.33 -2.10 16 6 C -0.05 -0.92 5.04 -104.62 -0.53 -1.45 16 7 C 0.09 1.51 4.94 -4.98 -0.02 1.48 16 8 N -0.52 -10.48 4.34 -237.52 -1.03 -11.51 16 9 C 0.16 3.81 3.61 -4.97 -0.02 3.79 16 10 C -0.50 -14.12 8.79 -34.44 -0.30 -14.42 16 11 H 0.08 2.47 7.56 -52.49 -0.40 2.07 16 12 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 13 N -0.90 -27.46 13.96 55.43 0.77 -26.69 16 14 Si 0.87 21.48 27.47 -169.99 -4.67 16.81 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 17 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 18 C 0.06 1.05 4.65 -3.83 -0.02 1.03 16 19 C -0.11 -1.59 4.73 -26.73 -0.13 -1.72 16 20 C -0.10 -1.24 2.92 -90.62 -0.26 -1.50 16 21 C -0.14 -1.59 9.19 37.16 0.34 -1.24 16 22 C -0.15 -2.10 8.95 37.15 0.33 -1.77 16 23 C -0.15 -2.35 8.71 -39.46 -0.34 -2.70 16 24 C 0.09 1.57 6.70 -39.12 -0.26 1.31 16 25 O -0.31 -4.86 10.28 -34.22 -0.35 -5.21 16 26 C 0.03 0.30 9.81 101.05 0.99 1.30 16 27 H 0.05 0.56 7.65 -51.93 -0.40 0.17 16 28 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.47 7.67 -51.93 -0.40 0.08 16 30 H 0.13 1.67 6.30 -52.49 -0.33 1.34 16 31 H 0.12 1.96 7.98 -52.49 -0.42 1.54 16 32 H 0.03 0.57 7.90 -51.93 -0.41 0.16 16 33 H 0.07 1.06 6.53 -51.92 -0.34 0.72 16 34 H 0.03 0.82 5.38 -51.93 -0.28 0.54 16 35 H -0.02 -0.46 7.55 -51.93 -0.39 -0.85 16 36 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 37 H 0.10 2.02 4.79 -51.93 -0.25 1.77 16 38 H 0.02 0.30 8.00 -51.93 -0.42 -0.11 16 39 H 0.05 0.67 6.88 -51.92 -0.36 0.32 16 40 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.07 1.06 6.47 -51.93 -0.34 0.72 16 46 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 48 H 0.13 1.90 6.30 -52.49 -0.33 1.57 16 49 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 50 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 51 H 0.06 0.66 7.67 -51.93 -0.40 0.26 16 LS Contribution 398.43 15.07 6.00 6.00 Total: -1.00 -32.24 398.43 -8.72 -40.96 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -8.82 Total: 1.40 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: -0.28 Total: -16.64 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: -0.26 Total: -38.19 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: -0.70 Total: -10.34 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.24 -8.72 -40.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093100892.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.911 kcal (2) G-P(sol) polarization free energy of solvation -32.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds