Wall clock time and date at job start Tue Mar 31 2020 12:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47240 * 2 1 4 4 C 1.53003 * 109.46891 * 304.99761 * 3 2 1 5 5 C 1.52992 * 109.47148 * 184.99719 * 3 2 1 6 6 O 1.42900 * 109.47181 * 64.99152 * 3 2 1 7 7 C 1.42901 * 113.99620 * 180.02562 * 6 3 2 8 8 C 1.53004 * 109.46758 * 180.02562 * 7 6 3 9 9 N 1.46904 * 109.47204 * 65.00494 * 8 7 6 10 10 C 1.46892 * 111.00131 * 179.97438 * 9 8 7 11 11 H 1.09008 * 109.47114 * 324.99774 * 10 9 8 12 12 C 1.52997 * 109.47295 * 84.99918 * 10 9 8 13 13 C 1.50696 * 109.47167 * 204.99735 * 10 9 8 14 14 C 1.38300 * 119.93262 * 319.72911 * 13 10 9 15 15 C 1.38104 * 120.07247 * 179.72590 * 14 13 10 16 16 C 1.38880 * 119.92810 * 0.54158 * 15 14 13 17 17 O 1.35747 * 120.07174 * 179.75066 * 16 15 14 18 18 C 1.34825 * 117.00597 * 174.44425 * 17 16 15 19 19 H 1.08005 * 119.99735 * 5.05211 * 18 17 16 20 20 C 1.38651 * 120.00550 * 185.05478 * 18 17 16 21 21 N 1.31549 * 120.00140 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 119.99721 * 0.02562 * 20 18 17 23 23 H 1.48492 * 109.47541 * 89.99511 * 22 20 18 24 24 H 1.48499 * 109.47053 * 210.00090 * 22 20 18 25 25 H 1.48503 * 109.47039 * 329.99530 * 22 20 18 26 26 C 1.38882 * 119.86199 * 359.72799 * 16 15 14 27 27 C 1.38098 * 119.93192 * 0.02562 * 26 16 15 28 28 H 1.08994 * 109.46999 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47285 * 300.00722 * 1 2 3 30 30 H 1.09002 * 109.46602 * 60.00578 * 1 2 3 31 31 H 1.08994 * 109.47843 * 239.99456 * 2 1 3 32 32 H 1.09002 * 109.46602 * 119.99422 * 2 1 3 33 33 H 1.08996 * 109.47141 * 180.02562 * 4 3 2 34 34 H 1.09004 * 109.46755 * 299.99903 * 4 3 2 35 35 H 1.09003 * 109.47261 * 59.99679 * 4 3 2 36 36 H 1.09001 * 109.47206 * 299.99488 * 5 3 2 37 37 H 1.09000 * 109.47503 * 60.00053 * 5 3 2 38 38 H 1.09005 * 109.47272 * 179.97438 * 5 3 2 39 39 H 1.09002 * 109.47192 * 60.00932 * 7 6 3 40 40 H 1.08997 * 109.47404 * 300.00018 * 7 6 3 41 41 H 1.08995 * 109.47560 * 305.00088 * 8 7 6 42 42 H 1.09004 * 109.46743 * 184.99932 * 8 7 6 43 43 H 1.00903 * 110.99438 * 303.95610 * 9 8 7 44 44 H 1.08994 * 109.47650 * 59.99661 * 12 10 9 45 45 H 1.09004 * 109.47560 * 180.02562 * 12 10 9 46 46 H 1.08999 * 109.46827 * 299.99503 * 12 10 9 47 47 H 1.08005 * 119.96345 * 359.97438 * 14 13 10 48 48 H 1.08000 * 120.03674 * 180.27353 * 15 14 13 49 49 H 0.97001 * 120.00064 * 180.02562 * 21 20 18 50 50 H 1.07994 * 120.03671 * 179.97438 * 26 16 15 51 51 H 1.08000 * 119.97139 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4300 2.1991 -1.1817 5 6 3.5648 1.4443 -0.1256 6 8 1.6618 2.0815 1.2210 7 6 2.0913 3.4406 1.3229 8 6 1.6342 4.0207 2.6629 9 7 2.3126 3.3157 3.7586 10 6 1.8977 3.8476 5.0635 11 1 1.7272 4.9210 4.9807 12 6 0.6058 3.1587 5.5077 13 6 2.9803 3.5878 6.0791 14 6 3.6559 2.3810 6.0742 15 6 4.6524 2.1421 7.0000 16 6 4.9681 3.1108 7.9438 17 8 5.9437 2.8770 8.8584 18 6 6.2791 3.8995 9.6706 19 1 5.7232 4.8247 9.6318 20 6 7.3376 3.7633 10.5558 21 7 7.6652 4.7612 11.3479 22 14 8.2995 2.1634 10.6223 23 1 9.4326 2.2267 9.6646 24 1 8.8237 1.9578 11.9964 25 1 7.4068 1.0336 10.2589 26 6 4.2841 4.3194 7.9497 27 6 3.2921 4.5543 7.0180 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5140 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8898 32 1 1.8932 -0.5138 0.8901 33 1 1.7936 3.2266 -1.1820 34 1 1.7184 1.7117 -2.1131 35 1 0.3436 2.1978 -1.0922 36 1 3.9994 0.9054 0.7162 37 1 3.8532 0.9570 -1.0570 38 1 3.9281 2.4720 -0.1261 39 1 1.6573 4.0208 0.5085 40 1 3.1786 3.4838 1.2607 41 1 0.5560 3.8969 2.7636 42 1 1.8836 5.0811 2.7037 43 1 2.1494 2.3214 3.7046 44 1 0.7763 2.0853 5.5905 45 1 0.2977 3.5537 6.4758 46 1 -0.1772 3.3467 4.7732 47 1 3.4067 1.6262 5.3430 48 1 5.1826 1.2012 6.9929 49 1 8.4060 4.6661 11.9669 50 1 4.5270 5.0745 8.6825 51 1 2.7600 5.4941 7.0218 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308633741.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:37 Heat of formation + Delta-G solvation = -62.440173 kcal Electronic energy + Delta-G solvation = -27066.408588 eV Core-core repulsion = 23352.158302 eV Total energy + Delta-G solvation = -3714.250286 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.209 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.59671 -39.20707 -37.64722 -35.87741 -34.39714 -32.36046 -31.41351 -30.53866 -30.18469 -28.23377 -27.82110 -27.39154 -25.27278 -24.03156 -22.60054 -22.29235 -21.52852 -20.05252 -19.89081 -17.76772 -17.24180 -16.77938 -16.15314 -15.87652 -15.27631 -14.92923 -14.72041 -14.41189 -14.21765 -14.04665 -13.78360 -13.72945 -13.59213 -13.49421 -12.93504 -12.65217 -12.52428 -12.46960 -12.44428 -12.27797 -12.21058 -12.11943 -12.06977 -11.87099 -11.61649 -11.44730 -11.21846 -11.09621 -11.04486 -10.66454 -10.62156 -10.53139 -10.40888 -10.08897 -9.67402 -9.32146 -8.81244 -8.30898 -8.15048 -7.20920 -6.36747 -4.02989 2.22407 2.31434 3.25286 3.29071 3.43992 3.44182 4.18967 4.28042 4.41037 4.51619 4.59032 4.66008 4.93028 4.97340 4.99991 5.09053 5.13260 5.14990 5.18629 5.19467 5.22880 5.30179 5.32316 5.36287 5.45118 5.47998 5.59543 5.61646 5.66171 5.69577 5.74205 5.78011 5.80217 5.89278 5.92857 5.98014 5.99958 6.09676 6.20008 6.22611 6.43148 6.65519 6.84398 7.00361 7.08867 7.19954 7.36340 7.44332 7.51015 7.69229 7.86306 8.10035 8.99089 9.63077 10.71171 Molecular weight = 321.21amu Principal moments of inertia in cm(-1) A = 0.019647 B = 0.002292 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.831849 B =12212.353053 C =12861.650533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.109 4.109 3 C 0.114 3.886 4 C -0.181 4.181 5 C -0.179 4.179 6 O -0.374 6.374 7 C 0.057 3.943 8 C 0.063 3.937 9 N -0.677 5.677 10 C 0.138 3.862 11 H 0.075 0.925 12 C -0.175 4.175 13 C -0.156 4.156 14 C -0.055 4.055 15 C -0.194 4.194 16 C 0.158 3.842 17 O -0.221 6.221 18 C -0.388 4.388 19 H 0.106 0.894 20 C 0.062 3.938 21 N -0.882 5.882 22 Si 0.905 3.095 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.260 1.260 26 C -0.220 4.220 27 C -0.071 4.071 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.051 0.949 40 H 0.062 0.938 41 H 0.034 0.966 42 H 0.082 0.918 43 H 0.347 0.653 44 H 0.057 0.943 45 H 0.061 0.939 46 H 0.048 0.952 47 H 0.110 0.890 48 H 0.114 0.886 49 H 0.278 0.722 50 H 0.131 0.869 51 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.428 -5.371 -23.821 28.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.146 4.146 3 C 0.074 3.926 4 C -0.238 4.238 5 C -0.236 4.236 6 O -0.294 6.294 7 C -0.019 4.019 8 C -0.066 4.066 9 N -0.308 5.308 10 C 0.029 3.971 11 H 0.093 0.907 12 C -0.234 4.234 13 C -0.157 4.157 14 C -0.074 4.074 15 C -0.213 4.213 16 C 0.106 3.894 17 O -0.126 6.126 18 C -0.463 4.463 19 H 0.123 0.877 20 C -0.141 4.141 21 N -0.521 5.521 22 Si 0.731 3.269 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.184 1.184 26 C -0.239 4.239 27 C -0.089 4.089 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.052 0.948 42 H 0.100 0.900 43 H 0.166 0.834 44 H 0.076 0.924 45 H 0.080 0.920 46 H 0.067 0.933 47 H 0.128 0.872 48 H 0.132 0.868 49 H 0.089 0.911 50 H 0.149 0.851 51 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -13.680 -5.192 -23.492 27.676 hybrid contribution -0.211 -0.566 0.050 0.606 sum -13.891 -5.758 -23.441 27.850 Atomic orbital electron populations 1.21789 0.95405 1.01359 1.02326 1.21503 0.96642 0.93852 1.02606 1.21442 0.93462 0.93112 0.84539 1.22494 1.02058 1.00769 0.98469 1.22422 0.95772 1.02760 1.02682 1.87921 1.78315 1.25194 1.37980 1.22622 0.99637 0.82968 0.96701 1.21975 0.96467 0.98349 0.89854 1.60616 1.60193 1.08877 1.01137 1.20211 0.91235 0.98403 0.87263 0.90680 1.22476 0.97816 1.01441 1.01621 1.19153 1.01581 0.95783 0.99224 1.20328 0.94580 0.96075 0.96379 1.20204 1.03021 0.99867 0.98191 1.19123 0.88704 0.93040 0.88517 1.83569 1.48185 1.39179 1.41656 1.20758 1.16184 0.93919 1.15468 0.87704 1.24458 0.96149 0.98537 0.94945 1.69646 1.28906 1.31048 1.22461 0.86182 0.80175 0.83277 0.77267 1.19939 1.20873 1.18388 1.21218 1.00439 0.99057 1.03220 1.20597 0.96369 0.97536 0.94425 0.93009 0.91919 0.92719 0.90949 0.91011 0.92316 0.91733 0.91434 0.91375 0.91854 0.92044 0.93127 0.91999 0.94810 0.89984 0.83384 0.92378 0.91950 0.93331 0.87165 0.86777 0.91150 0.85107 0.87556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.32 37.16 0.35 -0.72 16 2 C -0.11 -0.79 5.23 -26.73 -0.14 -0.93 16 3 C 0.11 0.90 0.82 -90.62 -0.07 0.83 16 4 C -0.18 -1.21 7.76 37.16 0.29 -0.92 16 5 C -0.18 -1.40 8.25 37.15 0.31 -1.09 16 6 O -0.37 -3.67 9.04 -35.23 -0.32 -3.99 16 7 C 0.06 0.53 5.48 37.16 0.20 0.73 16 8 C 0.06 0.63 5.90 -3.82 -0.02 0.61 16 9 N -0.68 -8.23 5.71 -107.95 -0.62 -8.85 16 10 C 0.14 1.81 2.79 -68.87 -0.19 1.62 16 11 H 0.07 0.95 7.66 -51.92 -0.40 0.55 16 12 C -0.17 -2.04 9.14 37.16 0.34 -1.70 16 13 C -0.16 -2.60 4.96 -104.57 -0.52 -3.12 16 14 C -0.06 -0.96 9.31 -39.61 -0.37 -1.33 16 15 C -0.19 -3.94 9.99 -39.39 -0.39 -4.34 16 16 C 0.16 3.73 6.65 -39.11 -0.26 3.47 16 17 O -0.22 -5.94 8.58 0.07 0.00 -5.94 16 18 C -0.39 -11.11 9.95 30.89 0.31 -10.80 16 19 H 0.11 3.07 5.44 -52.48 -0.29 2.78 16 20 C 0.06 1.76 5.49 -17.52 -0.10 1.67 16 21 N -0.88 -25.83 13.96 55.48 0.77 -25.06 16 22 Si 0.91 22.05 28.62 -169.99 -4.86 17.19 16 23 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 25 H -0.26 -6.35 7.11 56.52 0.40 -5.95 16 26 C -0.22 -4.84 9.17 -39.39 -0.36 -5.20 16 27 C -0.07 -1.29 9.66 -39.61 -0.38 -1.68 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.52 7.82 -51.93 -0.41 0.12 16 30 H 0.05 0.35 6.34 -51.93 -0.33 0.02 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.39 6.54 -51.93 -0.34 0.05 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.46 6.35 -51.93 -0.33 0.13 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.49 6.55 -51.93 -0.34 0.15 16 39 H 0.05 0.40 6.42 -51.93 -0.33 0.06 16 40 H 0.06 0.61 6.42 -51.93 -0.33 0.28 16 41 H 0.03 0.33 7.44 -51.93 -0.39 -0.05 16 42 H 0.08 0.78 8.05 -51.93 -0.42 0.36 16 43 H 0.35 4.24 7.38 -39.29 -0.29 3.95 16 44 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 45 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.05 0.50 7.45 -51.93 -0.39 0.11 16 47 H 0.11 1.66 7.25 -52.48 -0.38 1.28 16 48 H 0.11 2.19 8.06 -52.49 -0.42 1.77 16 49 H 0.28 7.53 8.31 -40.82 -0.34 7.19 16 50 H 0.13 3.02 5.64 -52.49 -0.30 2.72 16 51 H 0.11 1.68 8.03 -52.49 -0.42 1.26 16 LS Contribution 399.37 15.07 6.02 6.02 Total: -1.00 -29.74 399.37 -8.64 -38.38 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -8.61 Total: 5.17 kcal Atomic # 6 Polarization: -21.90 SS G_CDS: -1.02 Total: -22.92 kcal Atomic # 7 Polarization: -34.06 SS G_CDS: 0.16 Total: -33.90 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: -0.32 Total: -9.93 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.86 Total: 17.19 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -29.74 -8.64 -38.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308633741.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.064 kcal (2) G-P(sol) polarization free energy of solvation -29.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds