Wall clock time and date at job start Tue Mar 31 2020 12:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47240 * 2 1 4 4 C 1.53003 * 109.46891 * 304.99761 * 3 2 1 5 5 C 1.52992 * 109.47148 * 184.99719 * 3 2 1 6 6 O 1.42900 * 109.47181 * 64.99152 * 3 2 1 7 7 C 1.42901 * 113.99620 * 180.02562 * 6 3 2 8 8 C 1.53004 * 109.46758 * 180.02562 * 7 6 3 9 9 N 1.46904 * 109.47204 * 65.00494 * 8 7 6 10 10 C 1.46892 * 111.00131 * 179.97438 * 9 8 7 11 11 H 1.09008 * 109.47114 * 324.99774 * 10 9 8 12 12 C 1.52997 * 109.47295 * 84.99918 * 10 9 8 13 13 C 1.50696 * 109.47167 * 204.99735 * 10 9 8 14 14 C 1.38300 * 119.93262 * 319.72911 * 13 10 9 15 15 C 1.38104 * 120.07247 * 179.72590 * 14 13 10 16 16 C 1.38880 * 119.92810 * 0.54158 * 15 14 13 17 17 O 1.35747 * 120.07174 * 179.75066 * 16 15 14 18 18 C 1.34825 * 117.00597 * 174.44425 * 17 16 15 19 19 H 1.08005 * 119.99735 * 5.05211 * 18 17 16 20 20 C 1.38651 * 120.00550 * 185.05478 * 18 17 16 21 21 N 1.31549 * 120.00140 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 119.99721 * 0.02562 * 20 18 17 23 23 H 1.48492 * 109.47541 * 89.99511 * 22 20 18 24 24 H 1.48499 * 109.47053 * 210.00090 * 22 20 18 25 25 H 1.48503 * 109.47039 * 329.99530 * 22 20 18 26 26 C 1.38882 * 119.86199 * 359.72799 * 16 15 14 27 27 C 1.38098 * 119.93192 * 0.02562 * 26 16 15 28 28 H 1.08994 * 109.46999 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47285 * 300.00722 * 1 2 3 30 30 H 1.09002 * 109.46602 * 60.00578 * 1 2 3 31 31 H 1.08994 * 109.47843 * 239.99456 * 2 1 3 32 32 H 1.09002 * 109.46602 * 119.99422 * 2 1 3 33 33 H 1.08996 * 109.47141 * 180.02562 * 4 3 2 34 34 H 1.09004 * 109.46755 * 299.99903 * 4 3 2 35 35 H 1.09003 * 109.47261 * 59.99679 * 4 3 2 36 36 H 1.09001 * 109.47206 * 299.99488 * 5 3 2 37 37 H 1.09000 * 109.47503 * 60.00053 * 5 3 2 38 38 H 1.09005 * 109.47272 * 179.97438 * 5 3 2 39 39 H 1.09002 * 109.47192 * 60.00932 * 7 6 3 40 40 H 1.08997 * 109.47404 * 300.00018 * 7 6 3 41 41 H 1.08995 * 109.47560 * 305.00088 * 8 7 6 42 42 H 1.09004 * 109.46743 * 184.99932 * 8 7 6 43 43 H 1.00903 * 110.99438 * 303.95610 * 9 8 7 44 44 H 1.08994 * 109.47650 * 59.99661 * 12 10 9 45 45 H 1.09004 * 109.47560 * 180.02562 * 12 10 9 46 46 H 1.08999 * 109.46827 * 299.99503 * 12 10 9 47 47 H 1.08005 * 119.96345 * 359.97438 * 14 13 10 48 48 H 1.08000 * 120.03674 * 180.27353 * 15 14 13 49 49 H 0.97001 * 120.00064 * 180.02562 * 21 20 18 50 50 H 1.07994 * 120.03671 * 179.97438 * 26 16 15 51 51 H 1.08000 * 119.97139 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4300 2.1991 -1.1817 5 6 3.5648 1.4443 -0.1256 6 8 1.6618 2.0815 1.2210 7 6 2.0913 3.4406 1.3229 8 6 1.6342 4.0207 2.6629 9 7 2.3126 3.3157 3.7586 10 6 1.8977 3.8476 5.0635 11 1 1.7272 4.9210 4.9807 12 6 0.6058 3.1587 5.5077 13 6 2.9803 3.5878 6.0791 14 6 3.6559 2.3810 6.0742 15 6 4.6524 2.1421 7.0000 16 6 4.9681 3.1108 7.9438 17 8 5.9437 2.8770 8.8584 18 6 6.2791 3.8995 9.6706 19 1 5.7232 4.8247 9.6318 20 6 7.3376 3.7633 10.5558 21 7 7.6652 4.7612 11.3479 22 14 8.2995 2.1634 10.6223 23 1 9.4326 2.2267 9.6646 24 1 8.8237 1.9578 11.9964 25 1 7.4068 1.0336 10.2589 26 6 4.2841 4.3194 7.9497 27 6 3.2921 4.5543 7.0180 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5140 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8898 32 1 1.8932 -0.5138 0.8901 33 1 1.7936 3.2266 -1.1820 34 1 1.7184 1.7117 -2.1131 35 1 0.3436 2.1978 -1.0922 36 1 3.9994 0.9054 0.7162 37 1 3.8532 0.9570 -1.0570 38 1 3.9281 2.4720 -0.1261 39 1 1.6573 4.0208 0.5085 40 1 3.1786 3.4838 1.2607 41 1 0.5560 3.8969 2.7636 42 1 1.8836 5.0811 2.7037 43 1 2.1494 2.3214 3.7046 44 1 0.7763 2.0853 5.5905 45 1 0.2977 3.5537 6.4758 46 1 -0.1772 3.3467 4.7732 47 1 3.4067 1.6262 5.3430 48 1 5.1826 1.2012 6.9929 49 1 8.4060 4.6661 11.9669 50 1 4.5270 5.0745 8.6825 51 1 2.7600 5.4941 7.0218 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308633741.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:36 Heat of formation + Delta-G solvation = -79.373816 kcal Electronic energy + Delta-G solvation = -27067.142886 eV Core-core repulsion = 23352.158302 eV Total energy + Delta-G solvation = -3714.984584 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.209 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.93636 -40.19453 -39.08117 -37.12662 -35.18068 -34.41632 -32.48235 -31.77395 -31.11516 -29.65760 -28.48506 -28.14899 -27.23560 -24.67955 -23.91620 -23.68626 -22.52434 -21.40965 -20.61588 -19.69370 -19.08056 -17.44242 -17.12789 -16.87035 -16.46538 -16.11563 -15.87511 -15.67170 -15.58049 -15.28199 -15.16861 -14.84876 -14.60524 -14.37124 -14.28832 -14.08941 -13.99163 -13.85494 -13.39824 -13.21010 -13.01683 -12.94822 -12.91790 -12.73741 -12.64868 -12.56720 -12.36938 -12.24885 -12.08535 -12.06989 -11.87428 -11.63699 -11.57670 -11.23609 -11.13493 -10.87812 -10.33326 -9.75340 -9.25998 -8.90425 -8.48752 -6.20721 0.61795 0.70498 1.31213 1.35751 1.52252 2.28990 2.77567 2.80894 3.06168 3.18404 3.34637 3.84162 3.94905 3.98751 4.07973 4.10798 4.18005 4.29354 4.36985 4.40470 4.43233 4.45577 4.53219 4.62140 4.63364 4.65479 4.72645 4.73674 4.74624 4.87650 4.88872 4.93080 4.98053 5.01711 5.06132 5.10140 5.19292 5.22508 5.27056 5.29479 5.32857 5.40095 5.44837 5.54870 5.60691 5.78162 5.83890 5.94242 6.20679 6.30568 6.44868 6.56689 6.85943 7.62034 8.63031 Molecular weight = 321.21amu Principal moments of inertia in cm(-1) A = 0.019647 B = 0.002292 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.831849 B =12212.353053 C =12861.650533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.109 4.109 3 C 0.109 3.891 4 C -0.177 4.177 5 C -0.177 4.177 6 O -0.389 6.389 7 C 0.060 3.940 8 C 0.065 3.935 9 N -0.686 5.686 10 C 0.142 3.858 11 H 0.087 0.913 12 C -0.169 4.169 13 C -0.131 4.131 14 C -0.049 4.049 15 C -0.193 4.193 16 C 0.116 3.884 17 O -0.248 6.248 18 C -0.398 4.398 19 H 0.080 0.920 20 C 0.008 3.992 21 N -0.925 5.925 22 Si 0.971 3.029 23 H -0.266 1.266 24 H -0.267 1.267 25 H -0.264 1.264 26 C -0.235 4.235 27 C -0.072 4.072 28 H 0.057 0.943 29 H 0.047 0.953 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.053 0.947 37 H 0.076 0.924 38 H 0.057 0.943 39 H 0.066 0.934 40 H 0.053 0.947 41 H 0.040 0.960 42 H 0.088 0.912 43 H 0.348 0.652 44 H 0.055 0.945 45 H 0.059 0.941 46 H 0.067 0.933 47 H 0.142 0.858 48 H 0.124 0.876 49 H 0.284 0.716 50 H 0.107 0.893 51 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.127 -6.547 -26.840 31.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.146 4.146 3 C 0.070 3.930 4 C -0.234 4.234 5 C -0.235 4.235 6 O -0.309 6.309 7 C -0.016 4.016 8 C -0.064 4.064 9 N -0.317 5.317 10 C 0.032 3.968 11 H 0.105 0.895 12 C -0.228 4.228 13 C -0.132 4.132 14 C -0.068 4.068 15 C -0.212 4.212 16 C 0.067 3.933 17 O -0.156 6.156 18 C -0.474 4.474 19 H 0.098 0.902 20 C -0.190 4.190 21 N -0.566 5.566 22 Si 0.793 3.207 23 H -0.191 1.191 24 H -0.191 1.191 25 H -0.188 1.188 26 C -0.255 4.255 27 C -0.091 4.091 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.095 0.905 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.071 0.929 41 H 0.059 0.941 42 H 0.107 0.893 43 H 0.167 0.833 44 H 0.075 0.925 45 H 0.078 0.922 46 H 0.086 0.914 47 H 0.160 0.840 48 H 0.142 0.858 49 H 0.094 0.906 50 H 0.125 0.875 51 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -15.415 -6.365 -26.549 31.353 hybrid contribution 0.056 -0.167 0.706 0.728 sum -15.359 -6.532 -25.843 30.764 Atomic orbital electron populations 1.21756 0.95204 1.01653 1.01945 1.21531 0.96796 0.93555 1.02764 1.21583 0.93507 0.93466 0.84450 1.22460 1.01895 1.00739 0.98354 1.22409 0.95773 1.02481 1.02804 1.87900 1.78481 1.25468 1.39062 1.22582 0.99145 0.83110 0.96775 1.22022 0.96629 0.98465 0.89294 1.60542 1.60941 1.09134 1.01126 1.20184 0.90272 0.99477 0.86856 0.89514 1.22399 0.97305 1.01029 1.02023 1.19686 1.00746 0.94438 0.98362 1.20698 0.93197 0.97075 0.95784 1.20498 1.03567 0.99506 0.97668 1.19646 0.89200 0.94848 0.89606 1.83509 1.50334 1.38605 1.43134 1.20704 1.16434 0.93881 1.16378 0.90234 1.25281 0.97113 1.01996 0.94614 1.69729 1.30112 1.33004 1.23722 0.85210 0.78600 0.78768 0.78079 1.19135 1.19123 1.18813 1.21235 1.01903 0.98319 1.04017 1.20897 0.95345 0.99244 0.93589 0.92422 0.93409 0.91917 0.89502 0.92161 0.92232 0.90554 0.91476 0.92750 0.90501 0.92369 0.91603 0.92917 0.94139 0.89330 0.83319 0.92543 0.92238 0.91436 0.84026 0.85795 0.90628 0.87540 0.84747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.32 71.98 0.67 -1.13 16 2 C -0.11 -1.37 5.23 30.59 0.16 -1.21 16 3 C 0.11 1.49 0.82 -10.79 -0.01 1.48 16 4 C -0.18 -1.90 7.76 71.98 0.56 -1.34 16 5 C -0.18 -2.45 8.25 71.98 0.59 -1.85 16 6 O -0.39 -6.74 9.04 -148.98 -1.35 -8.08 16 7 C 0.06 0.95 5.48 71.98 0.39 1.34 16 8 C 0.06 1.08 5.90 86.30 0.51 1.59 16 9 N -0.69 -14.41 5.71 -495.45 -2.83 -17.24 16 10 C 0.14 3.21 2.79 44.17 0.12 3.33 16 11 H 0.09 1.84 7.66 -2.38 -0.02 1.83 16 12 C -0.17 -3.33 9.14 71.98 0.66 -2.68 16 13 C -0.13 -4.04 4.96 -19.83 -0.10 -4.14 16 14 C -0.05 -1.61 9.31 22.25 0.21 -1.40 16 15 C -0.19 -7.76 9.99 22.39 0.22 -7.53 16 16 C 0.12 5.62 6.65 22.58 0.15 5.77 16 17 O -0.25 -13.92 8.58 -22.65 -0.19 -14.12 16 18 C -0.40 -24.07 9.95 67.92 0.68 -23.39 16 19 H 0.08 5.04 5.44 -2.91 -0.02 5.02 16 20 C 0.01 0.47 5.49 84.83 0.47 0.94 16 21 N -0.92 -56.28 13.96 21.61 0.30 -55.98 16 22 Si 0.97 46.58 28.62 68.60 1.96 48.54 16 23 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 24 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 25 H -0.26 -12.66 7.11 99.48 0.71 -11.95 16 26 C -0.24 -10.69 9.17 22.39 0.21 -10.49 16 27 C -0.07 -2.57 9.66 22.25 0.21 -2.35 16 28 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.05 0.72 7.82 -2.39 -0.02 0.70 16 30 H 0.06 0.65 6.34 -2.39 -0.02 0.63 16 31 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.06 0.63 6.54 -2.39 -0.02 0.61 16 34 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 35 H 0.07 0.73 6.35 -2.39 -0.02 0.72 16 36 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.06 0.83 6.55 -2.38 -0.02 0.81 16 39 H 0.07 0.84 6.42 -2.39 -0.02 0.82 16 40 H 0.05 0.93 6.42 -2.39 -0.02 0.91 16 41 H 0.04 0.64 7.44 -2.39 -0.02 0.63 16 42 H 0.09 1.38 8.05 -2.39 -0.02 1.36 16 43 H 0.35 7.33 7.38 -89.69 -0.66 6.66 16 44 H 0.06 1.15 8.13 -2.39 -0.02 1.13 16 45 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 46 H 0.07 1.12 7.45 -2.39 -0.02 1.10 16 47 H 0.14 3.77 7.25 -2.91 -0.02 3.74 16 48 H 0.12 4.65 8.06 -2.91 -0.02 4.63 16 49 H 0.28 15.84 8.31 -92.71 -0.77 15.07 16 50 H 0.11 5.30 5.64 -2.91 -0.02 5.29 16 51 H 0.13 3.97 8.03 -2.91 -0.02 3.95 16 Total: -1.00 -67.11 399.37 3.85 -63.26 By element: Atomic # 1 Polarization: 26.43 SS G_CDS: 0.25 Total: 26.68 kcal Atomic # 6 Polarization: -48.76 SS G_CDS: 5.70 Total: -43.06 kcal Atomic # 7 Polarization: -70.69 SS G_CDS: -2.53 Total: -73.22 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: -1.54 Total: -22.20 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 1.96 Total: 48.54 kcal Total: -67.11 3.85 -63.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308633741.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.114 kcal (2) G-P(sol) polarization free energy of solvation -67.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds