Wall clock time and date at job start Tue Mar 31 2020 13:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47253 * 2 1 4 4 H 1.08995 * 109.47193 * 305.73632 * 3 2 1 5 5 N 1.46900 * 109.46909 * 65.72951 * 3 2 1 6 6 C 1.46904 * 111.00095 * 206.33500 * 5 3 2 7 7 C 1.50695 * 109.47039 * 185.16022 * 6 5 3 8 8 C 1.38290 * 119.97386 * 270.02580 * 7 6 5 9 9 C 1.38241 * 120.11073 * 179.97438 * 8 7 6 10 10 C 1.38162 * 120.05858 * 359.76405 * 9 8 7 11 11 C 1.38709 * 119.94232 * 0.48333 * 10 9 8 12 12 O 1.35906 * 120.05603 * 179.76453 * 11 10 9 13 13 C 1.42903 * 116.99968 * 359.73330 * 12 11 10 14 14 C 1.52998 * 109.46930 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.46959 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00053 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99734 * 180.02562 * 15 14 13 18 18 N 1.31522 * 119.99957 * 180.02562 * 17 15 14 19 19 Si 1.86792 * 120.00297 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47339 * 90.00033 * 19 17 15 21 21 H 1.48503 * 109.47387 * 209.99968 * 19 17 15 22 22 H 1.48501 * 109.47197 * 329.99784 * 19 17 15 23 23 C 1.38128 * 119.97342 * 90.00305 * 7 6 5 24 24 C 1.52992 * 109.47067 * 185.73112 * 3 2 1 25 25 H 1.09000 * 109.47217 * 185.00217 * 24 3 2 26 26 O 1.42899 * 109.47434 * 305.00094 * 24 3 2 27 27 C 1.52995 * 109.47261 * 65.00426 * 24 3 2 28 28 C 1.53006 * 109.47243 * 174.99991 * 27 24 3 29 29 H 1.09006 * 109.47432 * 294.50925 * 1 2 3 30 30 H 1.09002 * 109.47390 * 54.50898 * 1 2 3 31 31 H 1.09000 * 109.47842 * 174.50798 * 1 2 3 32 32 H 1.08998 * 109.46489 * 240.00197 * 2 1 3 33 33 H 1.09002 * 109.46799 * 120.00466 * 2 1 3 34 34 H 1.00906 * 111.00241 * 330.29222 * 5 3 2 35 35 H 1.09002 * 109.46837 * 65.16476 * 6 5 3 36 36 H 1.08998 * 109.47077 * 305.16349 * 6 5 3 37 37 H 1.08000 * 119.94353 * 359.97438 * 8 7 6 38 38 H 1.08000 * 119.97333 * 180.02562 * 9 8 7 39 39 H 1.08000 * 120.03168 * 180.26082 * 10 9 8 40 40 H 1.08993 * 109.46833 * 299.99658 * 13 12 11 41 41 H 1.09001 * 109.46820 * 59.99448 * 13 12 11 42 42 H 1.08993 * 109.47545 * 300.00643 * 14 13 12 43 43 H 1.09002 * 109.46791 * 60.00114 * 14 13 12 44 44 H 0.96989 * 120.00282 * 180.02562 * 18 17 15 45 45 H 1.07996 * 120.02491 * 0.02562 * 23 7 6 46 46 H 0.96698 * 114.00111 * 59.99901 * 26 24 3 47 47 H 1.09003 * 109.47083 * 294.99687 * 27 24 3 48 48 H 1.08997 * 109.47642 * 54.99426 * 27 24 3 49 49 H 1.09002 * 109.46865 * 60.00030 * 28 27 24 50 50 H 1.09006 * 109.46775 * 179.97438 * 28 27 24 51 51 H 1.08998 * 109.46809 * 299.99371 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5953 1.9851 -0.8341 5 7 1.6665 2.0939 1.2626 6 6 1.5548 3.5486 1.0916 7 6 1.2961 4.1932 2.4289 8 6 -0.0024 4.3771 2.8676 9 6 -0.2430 4.9676 4.0942 10 6 0.8140 5.3712 4.8871 11 6 2.1172 5.1926 4.4471 12 8 3.1586 5.5931 5.2232 13 6 2.8379 6.1962 6.4784 14 6 4.1289 6.5777 7.2055 15 6 3.7907 7.2143 8.5289 16 1 2.7583 7.3344 8.8222 17 6 4.7994 7.6435 9.3651 18 7 4.5043 8.1986 10.5204 19 14 6.5850 7.4366 8.8575 20 1 7.0301 8.6406 8.1108 21 1 7.4274 7.2657 10.0685 22 1 6.7173 6.2389 7.9895 23 6 2.3561 4.5995 3.2158 24 6 3.5631 1.4448 -0.1440 25 1 3.9350 2.4656 -0.0550 26 8 4.1401 0.6365 0.8834 27 6 3.9468 0.8800 -1.5131 28 6 5.4600 0.9973 -1.7075 29 1 -0.3634 0.4263 0.9351 30 1 -0.3634 0.5966 -0.8367 31 1 -0.3635 -1.0229 -0.0984 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 0.8105 1.7062 1.6301 35 1 0.7303 3.7726 0.4147 36 1 2.4835 3.9378 0.6742 37 1 -0.8300 4.0589 2.2509 38 1 -1.2580 5.1098 4.4348 39 1 0.6256 5.8287 5.8471 40 1 2.2380 7.0903 6.3091 41 1 2.2735 5.4898 7.0872 42 1 4.7285 5.6835 7.3746 43 1 4.6935 7.2840 6.5967 44 1 5.2138 8.5009 11.1085 45 1 3.3700 4.4557 2.8727 46 1 3.8532 -0.2868 0.8652 47 1 3.6536 -0.1684 -1.5688 48 1 3.4355 1.4422 -2.2945 49 1 5.9713 0.4349 -0.9261 50 1 5.7333 0.5944 -2.6827 51 1 5.7532 2.0456 -1.6519 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449639607.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:19 Heat of formation + Delta-G solvation = -109.430083 kcal Electronic energy + Delta-G solvation = -26709.841449 eV Core-core repulsion = 22993.553527 eV Total energy + Delta-G solvation = -3716.287922 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.209 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.11622 -40.02393 -38.69587 -36.53104 -35.43078 -34.05495 -33.48634 -32.93672 -31.57589 -30.64583 -28.72907 -27.22328 -26.09299 -24.45981 -23.48925 -23.04112 -22.89578 -21.55951 -20.90789 -19.33586 -18.41570 -17.39684 -17.11534 -17.00248 -16.89358 -16.65281 -16.58262 -16.26841 -16.23044 -15.58079 -15.00663 -14.76806 -14.55182 -14.39102 -14.16939 -14.13344 -14.10857 -13.72856 -13.39379 -13.14778 -13.11565 -12.96393 -12.69114 -12.58806 -12.55516 -12.51059 -12.29983 -12.08672 -11.90198 -11.85404 -11.72409 -11.58635 -11.55706 -11.41975 -11.33452 -10.83201 -10.73587 -9.81605 -9.25283 -9.08580 -8.36702 -6.43370 0.34819 0.53050 1.34326 1.36007 1.49108 2.31736 2.32864 2.74318 2.98038 3.25665 3.67423 3.73674 3.89620 3.90390 3.97665 4.12022 4.18272 4.19716 4.20486 4.22204 4.27377 4.30598 4.41780 4.43122 4.52858 4.62802 4.64434 4.67645 4.74749 4.78844 4.84569 4.91175 4.97227 5.07277 5.09124 5.12269 5.15709 5.22621 5.27372 5.32994 5.40326 5.42447 5.43379 5.47138 5.53875 5.61998 5.89235 6.10933 6.14504 6.50784 6.53307 6.61788 6.99558 7.21775 8.78956 Molecular weight = 321.21amu Principal moments of inertia in cm(-1) A = 0.014279 B = 0.002361 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.388938 B =11854.043266 C =13328.917953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.130 4.130 3 C 0.061 3.939 4 H 0.061 0.939 5 N -0.684 5.684 6 C 0.107 3.893 7 C -0.042 4.042 8 C -0.151 4.151 9 C -0.079 4.079 10 C -0.224 4.224 11 C 0.106 3.894 12 O -0.339 6.339 13 C 0.088 3.912 14 C -0.006 4.006 15 C -0.536 4.536 16 H 0.043 0.957 17 C 0.014 3.986 18 N -0.941 5.941 19 Si 0.948 3.052 20 H -0.264 1.264 21 H -0.277 1.277 22 H -0.253 1.253 23 C -0.149 4.149 24 C 0.116 3.884 25 H 0.074 0.926 26 O -0.568 6.568 27 C -0.150 4.150 28 C -0.150 4.150 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.347 0.653 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.151 0.849 38 H 0.149 0.851 39 H 0.122 0.878 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.025 0.975 43 H 0.026 0.974 44 H 0.271 0.729 45 H 0.118 0.882 46 H 0.377 0.623 47 H 0.081 0.919 48 H 0.079 0.921 49 H 0.049 0.951 50 H 0.063 0.937 51 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.369 -18.340 -30.120 36.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.167 4.167 3 C -0.049 4.049 4 H 0.079 0.921 5 N -0.318 5.318 6 C -0.021 4.021 7 C -0.043 4.043 8 C -0.170 4.170 9 C -0.097 4.097 10 C -0.244 4.244 11 C 0.061 3.939 12 O -0.253 6.253 13 C 0.013 3.987 14 C -0.044 4.044 15 C -0.574 4.574 16 H 0.061 0.939 17 C -0.184 4.184 18 N -0.580 5.580 19 Si 0.771 3.229 20 H -0.189 1.189 21 H -0.203 1.203 22 H -0.177 1.177 23 C -0.168 4.168 24 C 0.056 3.944 25 H 0.092 0.908 26 O -0.375 6.375 27 C -0.188 4.188 28 C -0.208 4.208 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.088 0.912 34 H 0.168 0.832 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.169 0.831 38 H 0.167 0.833 39 H 0.140 0.860 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.044 0.956 43 H 0.044 0.956 44 H 0.080 0.920 45 H 0.137 0.863 46 H 0.225 0.775 47 H 0.100 0.900 48 H 0.098 0.902 49 H 0.068 0.932 50 H 0.082 0.918 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.165 -17.690 -29.610 35.445 hybrid contribution -0.354 0.146 0.251 0.458 sum -8.519 -17.544 -29.359 35.246 Atomic orbital electron populations 1.21796 0.95057 1.02588 1.01728 1.21748 0.96712 0.94918 1.03364 1.22280 0.95943 0.95827 0.90836 0.92107 1.60327 1.40576 1.02453 1.28439 1.20843 1.01514 0.88073 0.91718 1.19685 0.92204 0.96353 0.96059 1.21196 0.96416 1.02294 0.97057 1.21206 0.98887 0.95772 0.93805 1.21487 0.92356 1.07858 1.02650 1.19466 0.87190 0.95403 0.91827 1.86037 1.33139 1.74769 1.31399 1.22649 0.99115 0.95980 0.80910 1.19444 0.94107 0.96803 0.94029 1.21091 0.94292 1.40084 1.01964 0.93899 1.25863 1.04255 0.93800 0.94469 1.70019 1.34992 1.41728 1.11303 0.85689 0.78765 0.80063 0.78390 1.18871 1.20255 1.17716 1.20365 1.00321 1.03265 0.92849 1.21945 0.91398 0.94483 0.86581 0.90839 1.86628 1.71458 1.24973 1.54420 1.22242 0.96973 1.02620 0.97005 1.21705 0.96004 1.01429 1.01643 0.92955 0.92370 0.91638 0.89473 0.91155 0.83209 0.92065 0.90770 0.83124 0.83321 0.85967 0.92394 0.92581 0.95614 0.95583 0.92043 0.86346 0.77452 0.90043 0.90211 0.93202 0.91789 0.93642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.65 71.98 0.69 -0.42 16 2 C -0.13 -1.04 4.78 30.59 0.15 -0.90 16 3 C 0.06 0.71 1.90 44.91 0.09 0.79 16 4 H 0.06 0.61 7.84 -2.39 -0.02 0.59 16 5 N -0.68 -11.10 6.22 -495.60 -3.08 -14.19 16 6 C 0.11 1.83 5.58 85.55 0.48 2.31 16 7 C -0.04 -0.99 5.43 -19.88 -0.11 -1.09 16 8 C -0.15 -3.09 9.70 22.28 0.22 -2.87 16 9 C -0.08 -1.87 10.04 22.25 0.22 -1.64 16 10 C -0.22 -7.03 9.04 22.36 0.20 -6.83 16 11 C 0.11 3.79 6.69 22.51 0.15 3.94 16 12 O -0.34 -14.23 10.14 -92.49 -0.94 -15.17 16 13 C 0.09 3.85 4.68 71.98 0.34 4.19 16 14 C -0.01 -0.32 4.41 29.85 0.13 -0.19 16 15 C -0.54 -31.55 9.66 25.60 0.25 -31.30 16 16 H 0.04 2.71 7.99 -2.91 -0.02 2.68 16 17 C 0.01 0.85 5.47 84.65 0.46 1.32 16 18 N -0.94 -58.92 13.96 21.45 0.30 -58.62 16 19 Si 0.95 45.35 27.47 68.60 1.88 47.24 16 20 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 21 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 22 H -0.25 -11.66 6.54 99.48 0.65 -11.01 16 23 C -0.15 -4.59 9.64 22.37 0.22 -4.37 16 24 C 0.12 1.70 2.89 30.59 0.09 1.79 16 25 H 0.07 1.39 7.39 -2.39 -0.02 1.37 16 26 O -0.57 -10.80 12.73 -148.98 -1.90 -12.70 16 27 C -0.15 -1.50 5.25 30.59 0.16 -1.34 16 28 C -0.15 -1.89 9.81 71.98 0.71 -1.18 16 29 H 0.05 0.44 6.65 -2.38 -0.02 0.42 16 30 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.09 0.46 6.42 -2.39 -0.02 0.45 16 33 H 0.07 0.68 7.04 -2.39 -0.02 0.66 16 34 H 0.35 5.11 6.64 -89.69 -0.60 4.51 16 35 H 0.06 0.78 8.08 -2.39 -0.02 0.76 16 36 H 0.07 1.36 7.31 -2.39 -0.02 1.35 16 37 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 38 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 39 H 0.12 3.92 6.30 -2.91 -0.02 3.90 16 40 H 0.06 2.45 7.67 -2.39 -0.02 2.44 16 41 H 0.06 2.40 7.65 -2.39 -0.02 2.38 16 42 H 0.03 1.30 7.20 -2.39 -0.02 1.28 16 43 H 0.03 1.28 7.57 -2.39 -0.02 1.27 16 44 H 0.27 15.71 8.31 -92.72 -0.77 14.94 16 45 H 0.12 3.75 8.06 -2.91 -0.02 3.73 16 46 H 0.38 4.68 7.33 -74.06 -0.54 4.14 16 47 H 0.08 0.58 6.69 -2.39 -0.02 0.56 16 48 H 0.08 0.63 8.14 -2.39 -0.02 0.62 16 49 H 0.05 0.75 7.82 -2.39 -0.02 0.73 16 50 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 51 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -70.80 402.67 0.42 -70.37 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: -0.28 Total: 20.87 kcal Atomic # 6 Polarization: -42.24 SS G_CDS: 4.44 Total: -37.81 kcal Atomic # 7 Polarization: -70.02 SS G_CDS: -2.78 Total: -72.81 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -2.83 Total: -27.87 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.88 Total: 47.24 kcal Total: -70.80 0.42 -70.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449639607.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.057 kcal (2) G-P(sol) polarization free energy of solvation -70.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds