Wall clock time and date at job start Tue Mar 31 2020 13:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 O 1.42903 * 109.46726 * 180.02562 * 3 2 1 5 5 C 1.35995 * 116.99587 * 180.02562 * 4 3 2 6 6 C 1.38565 * 120.07439 * 359.72507 * 5 4 3 7 7 C 1.38248 * 119.99552 * 179.74455 * 6 5 4 8 8 C 1.50700 * 119.92374 * 180.25225 * 7 6 5 9 9 N 1.46898 * 109.47526 * 270.25810 * 8 7 6 10 10 C 1.46898 * 111.00059 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.46798 * 179.97438 * 10 9 8 12 12 C 1.52996 * 109.47431 * 299.99614 * 11 10 9 13 13 C 1.52998 * 109.47388 * 59.99899 * 11 10 9 14 14 C 1.50708 * 109.46793 * 180.02562 * 11 10 9 15 15 H 1.07993 * 119.99781 * 359.97438 * 14 11 10 16 16 C 1.37881 * 119.99856 * 180.02562 * 14 11 10 17 17 N 1.31520 * 119.99782 * 359.97438 * 16 14 11 18 18 Si 1.86795 * 119.99953 * 179.97438 * 16 14 11 19 19 H 1.48499 * 109.47037 * 59.99923 * 18 16 14 20 20 H 1.48501 * 109.47177 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47213 * 299.99702 * 18 16 14 22 22 C 1.38246 * 120.14817 * 0.50974 * 7 6 5 23 23 C 1.38242 * 120.14884 * 359.76851 * 22 7 6 24 24 C 1.38565 * 119.99815 * 359.97438 * 23 22 7 25 25 O 1.35996 * 120.07637 * 179.97438 * 24 23 22 26 26 C 1.42898 * 116.99713 * 0.02562 * 25 24 23 27 27 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 29 29 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 30 30 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 31 31 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 32 32 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 33 33 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 34 34 H 1.07994 * 119.99980 * 359.97438 * 6 5 4 35 35 H 1.09000 * 109.47412 * 30.25759 * 8 7 6 36 36 H 1.09000 * 109.47112 * 150.25577 * 8 7 6 37 37 H 1.00896 * 111.00258 * 56.04187 * 9 8 7 38 38 H 1.08995 * 109.46978 * 299.99581 * 10 9 8 39 39 H 1.08996 * 109.47050 * 59.99907 * 10 9 8 40 40 H 1.08998 * 109.46877 * 60.00084 * 12 11 10 41 41 H 1.09001 * 109.47668 * 180.02562 * 12 11 10 42 42 H 1.09001 * 109.46982 * 300.00326 * 12 11 10 43 43 H 1.09001 * 109.46768 * 59.99932 * 13 11 10 44 44 H 1.09000 * 109.47446 * 179.97438 * 13 11 10 45 45 H 1.08998 * 109.46947 * 299.99933 * 13 11 10 46 46 H 0.96998 * 119.99325 * 179.97438 * 17 16 14 47 47 H 1.08004 * 119.92680 * 179.74146 * 22 7 6 48 48 H 1.07997 * 120.00411 * 179.97438 * 23 22 7 49 49 H 1.09005 * 109.47392 * 300.00389 * 26 25 24 50 50 H 1.09002 * 109.46922 * 59.99615 * 26 25 24 51 51 H 1.09000 * 109.47236 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0863 2.6542 -0.0001 6 6 3.3331 3.8173 -0.0049 7 6 3.9624 5.0483 0.0009 8 6 3.1416 6.3121 0.0015 9 7 2.8747 6.7234 -1.3832 10 6 2.0754 7.9553 -1.4218 11 6 1.8191 8.3515 -2.8772 12 6 3.1550 8.5881 -3.5843 13 6 1.0592 7.2281 -3.5854 14 6 0.9996 9.6157 -2.9167 15 1 0.6921 10.0888 -1.9959 16 6 0.6416 10.1676 -4.1285 17 7 1.0157 9.5910 -5.2498 18 14 -0.3747 11.7341 -4.1775 19 1 0.3631 12.8245 -3.4906 20 1 -0.6235 12.1187 -5.5901 21 1 -1.6713 11.5047 -3.4909 22 6 5.3428 5.1224 0.0008 23 6 6.1002 3.9659 -0.0002 24 6 5.4759 2.7289 -0.0007 25 8 6.2195 1.5902 -0.0023 26 6 7.6402 1.7432 -0.0028 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6765 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 2.2546 3.7621 -0.0094 35 1 2.1973 6.1319 0.5153 36 1 3.6901 7.1013 0.5156 37 1 2.4239 5.9832 -1.8998 38 1 1.1238 7.7868 -0.9177 39 1 2.6170 8.7557 -0.9177 40 1 3.7481 7.6741 -3.5556 41 1 2.9724 8.8709 -4.6210 42 1 3.6964 9.3885 -3.0797 43 1 0.1074 7.0596 -3.0816 44 1 0.8762 7.5106 -4.6221 45 1 1.6523 6.3141 -3.5567 46 1 0.7636 9.9791 -6.1022 47 1 5.8307 6.0859 0.0012 48 1 7.1785 4.0265 -0.0007 49 1 7.9461 2.2940 -0.8924 50 1 7.9469 2.2921 0.8876 51 1 8.1115 0.7603 -0.0046 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459693473.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:44 Heat of formation + Delta-G solvation = -63.636001 kcal Electronic energy + Delta-G solvation = -27317.645406 eV Core-core repulsion = 23603.343265 eV Total energy + Delta-G solvation = -3714.302141 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.209 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.61275 -38.63748 -37.71892 -36.50067 -34.25059 -33.72628 -31.36291 -30.20805 -29.75565 -27.55621 -26.78193 -25.55571 -25.28355 -25.04855 -23.03619 -22.64740 -21.62424 -20.84668 -18.56240 -18.35323 -17.22912 -16.65042 -16.49625 -15.92093 -15.69954 -15.22598 -14.80174 -14.58784 -14.42776 -14.31994 -14.19805 -13.94224 -13.58979 -13.01246 -12.67889 -12.63743 -12.39911 -12.36299 -12.15810 -12.05034 -11.75727 -11.55950 -11.42217 -11.15919 -11.09446 -11.07916 -10.96267 -10.91350 -10.72369 -10.62194 -10.56602 -10.16554 -10.04743 -9.37288 -9.08804 -8.72874 -8.61172 -8.28012 -7.80842 -7.64994 -5.90283 -4.00906 1.27695 1.45645 3.07423 3.19298 3.32866 3.37809 3.40227 3.69879 4.44646 4.59430 4.64903 4.75764 4.81062 4.87710 4.97577 5.01057 5.04219 5.13668 5.19220 5.23202 5.30234 5.32482 5.34971 5.41309 5.43886 5.55379 5.68917 5.75826 5.81242 5.92433 5.95686 6.14075 6.26333 6.34714 6.38950 6.67129 6.71082 6.72742 6.89827 7.00415 7.08976 7.17718 7.40351 7.48147 7.54735 7.72969 7.76863 7.84104 7.97236 8.22215 8.35897 8.56690 9.00470 9.63990 11.10178 Molecular weight = 321.21amu Principal moments of inertia in cm(-1) A = 0.013568 B = 0.002732 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.124983 B =10247.125546 C =11627.987703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C 0.056 3.944 4 O -0.307 6.307 5 C 0.100 3.900 6 C -0.167 4.167 7 C -0.067 4.067 8 C 0.097 3.903 9 N -0.680 5.680 10 C 0.075 3.925 11 C 0.070 3.930 12 C -0.119 4.119 13 C -0.132 4.132 14 C -0.508 4.508 15 H 0.051 0.949 16 C 0.065 3.935 17 N -0.885 5.885 18 Si 0.889 3.111 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.279 1.279 22 C -0.094 4.094 23 C -0.172 4.172 24 C 0.091 3.909 25 O -0.310 6.310 26 C 0.027 3.973 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.131 0.869 35 H 0.030 0.970 36 H 0.077 0.923 37 H 0.338 0.662 38 H 0.013 0.987 39 H 0.057 0.943 40 H 0.020 0.980 41 H 0.074 0.926 42 H 0.018 0.982 43 H 0.018 0.982 44 H 0.083 0.917 45 H 0.010 0.990 46 H 0.258 0.742 47 H 0.129 0.871 48 H 0.133 0.867 49 H 0.054 0.946 50 H 0.053 0.947 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.189 -17.588 11.832 22.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.019 4.019 4 O -0.222 6.222 5 C 0.055 3.945 6 C -0.186 4.186 7 C -0.068 4.068 8 C -0.032 4.032 9 N -0.312 5.312 10 C -0.054 4.054 11 C 0.069 3.931 12 C -0.177 4.177 13 C -0.190 4.190 14 C -0.547 4.547 15 H 0.069 0.931 16 C -0.136 4.136 17 N -0.523 5.523 18 Si 0.717 3.283 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.205 1.205 22 C -0.113 4.113 23 C -0.191 4.191 24 C 0.045 3.955 25 O -0.224 6.224 26 C -0.068 4.068 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.149 0.851 35 H 0.048 0.952 36 H 0.095 0.905 37 H 0.157 0.843 38 H 0.031 0.969 39 H 0.075 0.925 40 H 0.039 0.961 41 H 0.092 0.908 42 H 0.037 0.963 43 H 0.037 0.963 44 H 0.102 0.898 45 H 0.029 0.971 46 H 0.069 0.931 47 H 0.147 0.853 48 H 0.150 0.850 49 H 0.073 0.927 50 H 0.071 0.929 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 7.774 -17.611 11.558 22.453 hybrid contribution -1.406 0.951 0.213 1.710 sum 6.369 -16.660 11.771 21.370 Atomic orbital electron populations 1.21700 0.94271 1.02420 1.02401 1.21454 0.95954 0.94886 1.03595 1.22879 0.78778 0.98749 1.01489 1.86116 1.20784 1.26091 1.89175 1.18114 0.88973 0.84975 1.02429 1.20971 0.99785 0.91122 1.06756 1.19633 0.93980 0.93983 0.99179 1.20854 0.96809 0.93310 0.92192 1.60650 1.52700 1.07676 1.10200 1.22184 0.92832 0.89670 1.00666 1.18078 0.93374 0.93547 0.88078 1.21640 0.96093 0.97182 1.02786 1.21836 0.97019 0.95825 1.04340 1.21080 1.32831 1.08575 0.92168 0.93057 1.24886 0.95929 0.96999 0.95744 1.69830 1.45920 1.39405 0.97188 0.86721 0.80738 0.84010 0.76839 1.20399 1.21362 1.20490 1.20760 0.92996 0.97890 0.99678 1.21042 1.00205 0.91064 1.06801 1.18206 0.88140 0.86008 1.03117 1.86145 1.18400 1.28487 1.89335 1.23027 0.79007 1.03544 1.01207 0.91820 0.92388 0.92165 0.90835 0.90989 0.91910 0.92209 0.85115 0.95236 0.90489 0.84290 0.96881 0.92465 0.96075 0.90766 0.96317 0.96278 0.89812 0.97063 0.93134 0.85309 0.84952 0.92717 0.92882 0.88491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 37.16 0.37 -0.68 16 2 C -0.12 -1.03 6.30 -26.73 -0.17 -1.20 16 3 C 0.06 0.59 4.74 37.16 0.18 0.76 16 4 O -0.31 -4.19 9.92 -34.23 -0.34 -4.53 16 5 C 0.10 1.42 6.70 -39.12 -0.26 1.16 16 6 C -0.17 -2.25 8.69 -39.46 -0.34 -2.60 16 7 C -0.07 -0.93 5.39 -104.62 -0.56 -1.50 16 8 C 0.10 1.45 5.81 -4.98 -0.03 1.42 16 9 N -0.68 -12.20 5.70 -115.06 -0.66 -12.86 16 10 C 0.07 1.55 4.59 -3.82 -0.02 1.53 16 11 C 0.07 1.69 0.57 -155.66 -0.09 1.60 16 12 C -0.12 -2.93 8.09 37.16 0.30 -2.63 16 13 C -0.13 -3.14 7.92 37.16 0.29 -2.85 16 14 C -0.51 -13.67 8.01 -34.44 -0.28 -13.95 16 15 H 0.05 1.37 7.74 -52.49 -0.41 0.97 16 16 C 0.07 1.77 5.15 -17.82 -0.09 1.68 16 17 N -0.88 -24.58 9.35 55.43 0.52 -24.06 16 18 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 C -0.09 -1.24 9.69 -39.58 -0.38 -1.62 16 23 C -0.17 -2.10 9.04 -39.46 -0.36 -2.46 16 24 C 0.09 1.24 6.70 -39.12 -0.26 0.97 16 25 O -0.31 -4.01 10.28 -34.23 -0.35 -4.36 16 26 C 0.03 0.23 9.81 101.05 0.99 1.22 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.65 7.65 -51.93 -0.40 0.25 16 33 H 0.06 0.57 7.67 -51.93 -0.40 0.17 16 34 H 0.13 1.59 6.30 -52.49 -0.33 1.26 16 35 H 0.03 0.42 8.09 -51.93 -0.42 0.00 16 36 H 0.08 1.10 8.08 -51.93 -0.42 0.68 16 37 H 0.34 6.13 6.76 -39.29 -0.27 5.86 16 38 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.02 0.48 7.60 -51.93 -0.39 0.08 16 41 H 0.07 2.00 6.07 -51.93 -0.32 1.68 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 45 H 0.01 0.23 6.57 -51.93 -0.34 -0.11 16 46 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 47 H 0.13 1.55 8.06 -52.48 -0.42 1.13 16 48 H 0.13 1.26 6.30 -52.49 -0.33 0.93 16 49 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 50 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 51 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 401.26 15.07 6.05 6.05 Total: -1.00 -29.66 401.26 -9.43 -39.09 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -8.92 Total: 3.71 kcal Atomic # 6 Polarization: -18.43 SS G_CDS: -0.71 Total: -19.14 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: -0.14 Total: -36.92 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: -0.69 Total: -8.89 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -29.66 -9.43 -39.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459693473.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.543 kcal (2) G-P(sol) polarization free energy of solvation -29.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds