Wall clock time and date at job start Tue Mar 31 2020 13:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46902 * 111.00165 * 2 1 4 4 C 1.52993 * 109.47535 * 286.79358 * 3 2 1 5 5 C 1.53006 * 109.46874 * 306.93974 * 4 3 2 6 6 C 1.52997 * 109.47385 * 66.93807 * 4 3 2 7 7 C 1.53000 * 109.47504 * 186.94325 * 4 3 2 8 8 C 1.50696 * 109.47474 * 179.97438 * 7 4 3 9 9 H 1.08003 * 119.99632 * 0.02562 * 8 7 4 10 10 C 1.37878 * 120.00080 * 179.97438 * 8 7 4 11 11 N 1.31507 * 119.99770 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 119.99814 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47369 * 60.00458 * 12 10 8 14 14 H 1.48506 * 109.47062 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47520 * 300.00106 * 12 10 8 16 16 C 1.46899 * 111.00209 * 123.96279 * 2 1 3 17 17 H 1.09008 * 109.46712 * 301.02267 * 16 2 1 18 18 C 1.52992 * 109.47496 * 61.02407 * 16 2 1 19 19 C 1.52995 * 109.47150 * 60.00232 * 18 16 2 20 20 C 1.53001 * 109.47444 * 60.00094 * 19 18 16 21 21 H 1.08998 * 109.46982 * 59.99663 * 20 19 18 22 22 C 1.52994 * 109.47801 * 180.02562 * 20 19 18 23 23 F 1.39905 * 109.46845 * 59.99565 * 22 20 19 24 24 F 1.39901 * 109.47579 * 179.97438 * 22 20 19 25 25 F 1.39892 * 109.46922 * 300.00260 * 22 20 19 26 26 C 1.53008 * 109.46734 * 300.00285 * 20 19 18 27 27 C 1.52995 * 109.47388 * 59.99680 * 26 20 19 28 28 H 1.08998 * 109.46887 * 336.13966 * 1 2 3 29 29 H 1.08998 * 109.47466 * 96.14155 * 1 2 3 30 30 H 1.09001 * 109.46844 * 216.14290 * 1 2 3 31 31 H 1.09006 * 109.46735 * 46.79532 * 3 2 1 32 32 H 1.09000 * 109.47205 * 166.78532 * 3 2 1 33 33 H 1.08998 * 109.46929 * 60.00210 * 5 4 3 34 34 H 1.09004 * 109.47063 * 179.97438 * 5 4 3 35 35 H 1.08994 * 109.47418 * 299.99734 * 5 4 3 36 36 H 1.09007 * 109.46886 * 44.21620 * 6 4 3 37 37 H 1.09001 * 109.47140 * 164.21352 * 6 4 3 38 38 H 1.08997 * 109.47319 * 284.21930 * 6 4 3 39 39 H 1.09002 * 109.46745 * 300.00053 * 7 4 3 40 40 H 1.08996 * 109.46946 * 59.99274 * 7 4 3 41 41 H 0.97005 * 120.00070 * 180.02562 * 11 10 8 42 42 H 1.08998 * 109.46980 * 180.02562 * 18 16 2 43 43 H 1.09000 * 109.46890 * 300.00058 * 18 16 2 44 44 H 1.09000 * 109.47747 * 180.02562 * 19 18 16 45 45 H 1.09007 * 109.47101 * 300.00077 * 19 18 16 46 46 H 1.08998 * 109.46878 * 299.99441 * 26 20 19 47 47 H 1.09000 * 109.46754 * 179.97438 * 26 20 19 48 48 H 1.08998 * 109.47237 * 179.97438 * 27 26 20 49 49 H 1.09007 * 109.47101 * 59.99902 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.7892 1.9970 -1.3809 5 6 2.3801 1.0768 -2.4510 6 6 0.2926 2.1831 -1.6381 7 6 2.4889 3.3566 -1.4346 8 6 2.2863 3.9724 -2.7950 9 1 1.7151 3.4469 -3.5460 10 6 2.8291 5.2073 -3.0805 11 7 3.5240 5.8474 -2.1658 12 14 2.5772 5.9710 -4.7665 13 1 1.1246 6.1513 -5.0164 14 1 3.2565 7.2906 -4.8187 15 1 3.1510 5.0781 -5.8052 16 6 1.9955 -0.7661 1.1374 17 1 1.6312 -0.3312 2.0682 18 6 1.5259 -2.2186 1.0352 19 6 2.0373 -2.8291 -0.2712 20 6 3.5665 -2.7850 -0.2907 21 1 3.9571 -3.3533 0.5534 22 6 4.0779 -3.3948 -1.5973 23 9 3.5764 -2.6648 -2.6803 24 9 5.4762 -3.3539 -1.6153 25 9 3.6485 -4.7229 -1.6914 26 6 4.0360 -1.3323 -0.1883 27 6 3.5247 -0.7218 1.1180 28 1 -0.3633 0.9398 0.4157 29 1 -0.3634 -0.1099 -1.0217 30 1 -0.3633 -0.8299 0.6061 31 1 1.4688 1.9627 0.7491 32 1 3.0597 1.3521 0.2349 33 1 1.8816 0.1082 -2.4128 34 1 2.2327 1.5222 -3.4349 35 1 3.4463 0.9442 -2.2678 36 1 -0.1811 2.5935 -0.7463 37 1 0.1500 2.8687 -2.4734 38 1 -0.1575 1.2197 -1.8779 39 1 2.0680 4.0121 -0.6722 40 1 3.5551 3.2239 -1.2513 41 1 3.9056 6.7164 -2.3665 42 1 1.9163 -2.7869 1.8794 43 1 0.4365 -2.2501 1.0490 44 1 1.7024 -3.8638 -0.3444 45 1 1.6466 -2.2607 -1.1153 46 1 3.6454 -0.7639 -1.0324 47 1 5.1255 -1.3009 -0.2018 48 1 3.8596 0.3129 1.1911 49 1 3.9154 -1.2903 1.9621 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578470621.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:02 Heat of formation + Delta-G solvation = -169.963348 kcal Electronic energy + Delta-G solvation = -30255.851444 eV Core-core repulsion = 25995.081862 eV Total energy + Delta-G solvation = -4260.769581 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.198 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.06597 -47.58752 -47.48307 -39.86575 -37.11351 -34.49242 -32.25763 -31.25919 -30.45190 -27.36713 -26.93301 -26.07756 -25.52104 -23.71439 -22.81176 -22.39296 -21.30480 -19.14683 -18.22891 -18.08113 -17.93985 -17.50881 -16.17355 -15.80589 -15.58512 -14.86798 -14.56107 -14.43523 -14.42341 -14.04858 -13.97120 -13.70504 -13.68958 -13.54052 -13.46696 -13.05774 -12.86745 -12.57516 -12.50580 -12.16482 -12.12908 -12.02105 -11.86681 -11.58184 -11.30147 -11.08254 -10.86997 -10.84275 -10.71679 -10.69194 -10.35957 -10.29520 -10.20211 -10.01396 -9.91913 -9.53437 -8.92220 -8.80450 -8.28544 -7.90608 -5.93627 -3.93164 2.79547 3.36716 3.41214 3.43790 3.79197 3.99339 4.06042 4.17467 4.51876 4.61927 4.68155 4.93373 5.09064 5.10839 5.23681 5.26709 5.32605 5.42332 5.42858 5.51887 5.66949 5.73792 5.77472 5.80279 5.87427 5.98648 6.01695 6.07244 6.13667 6.18711 6.22909 6.37638 6.40311 6.43749 6.63461 6.74978 6.84594 6.92674 7.25013 7.29489 7.34760 7.44560 7.53129 7.73967 7.89612 8.06923 8.52002 9.11951 9.69355 11.18013 Molecular weight = 321.20amu Principal moments of inertia in cm(-1) A = 0.015381 B = 0.003885 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.953431 B = 7205.157362 C = 8049.683729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.525 5.525 3 C 0.059 3.941 4 C -0.052 4.052 5 C -0.112 4.112 6 C -0.138 4.138 7 C 0.035 3.965 8 C -0.505 4.505 9 H 0.058 0.942 10 C 0.055 3.945 11 N -0.898 5.898 12 Si 0.886 3.114 13 H -0.278 1.278 14 H -0.289 1.289 15 H -0.277 1.277 16 C 0.079 3.921 17 H 0.038 0.962 18 C -0.106 4.106 19 C -0.110 4.110 20 C -0.123 4.123 21 H 0.103 0.897 22 C 0.451 3.549 23 F -0.176 7.176 24 F -0.188 7.188 25 F -0.190 7.190 26 C -0.118 4.118 27 C -0.111 4.111 28 H 0.038 0.962 29 H 0.073 0.927 30 H 0.050 0.950 31 H 0.027 0.973 32 H 0.073 0.927 33 H 0.045 0.955 34 H 0.051 0.949 35 H 0.037 0.963 36 H 0.033 0.967 37 H 0.064 0.936 38 H 0.044 0.956 39 H 0.010 0.990 40 H 0.013 0.987 41 H 0.259 0.741 42 H 0.064 0.936 43 H 0.071 0.929 44 H 0.064 0.936 45 H 0.093 0.907 46 H 0.101 0.899 47 H 0.066 0.934 48 H 0.078 0.922 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.408 -19.443 7.897 21.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.250 5.250 3 C -0.068 4.068 4 C -0.053 4.053 5 C -0.169 4.169 6 C -0.195 4.195 7 C -0.003 4.003 8 C -0.544 4.544 9 H 0.077 0.923 10 C -0.145 4.145 11 N -0.538 5.538 12 Si 0.714 3.286 13 H -0.204 1.204 14 H -0.215 1.215 15 H -0.203 1.203 16 C -0.030 4.030 17 H 0.056 0.944 18 C -0.144 4.144 19 C -0.147 4.147 20 C -0.143 4.143 21 H 0.121 0.879 22 C 0.397 3.603 23 F -0.157 7.157 24 F -0.169 7.169 25 F -0.172 7.172 26 C -0.155 4.155 27 C -0.148 4.148 28 H 0.057 0.943 29 H 0.091 0.909 30 H 0.068 0.932 31 H 0.045 0.955 32 H 0.092 0.908 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.056 0.944 36 H 0.052 0.948 37 H 0.082 0.918 38 H 0.063 0.937 39 H 0.029 0.971 40 H 0.032 0.968 41 H 0.068 0.932 42 H 0.082 0.918 43 H 0.089 0.911 44 H 0.082 0.918 45 H 0.111 0.889 46 H 0.120 0.880 47 H 0.085 0.915 48 H 0.096 0.904 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.138 -19.525 7.472 21.015 hybrid contribution -0.178 0.878 -0.333 0.955 sum -2.316 -18.648 7.139 20.101 Atomic orbital electron populations 1.22827 0.88166 1.00085 1.02061 1.62113 1.07180 1.14774 1.40895 1.22549 0.99703 0.86252 0.98289 1.20547 0.95546 0.97156 0.92012 1.21593 0.99021 0.97644 0.98673 1.22146 0.95901 1.00272 1.01197 1.19103 0.94965 0.89322 0.96872 1.21199 1.32338 1.02370 0.98444 0.92350 1.24996 0.95541 0.97369 0.96601 1.69953 1.35654 1.14694 1.33521 0.86752 0.78227 0.78457 0.85117 1.20395 1.21482 1.20315 1.21649 0.94929 0.93826 0.92578 0.94364 1.21582 1.00884 0.95016 0.96893 1.21475 0.91314 1.01208 1.00712 1.22440 0.99542 0.99729 0.92584 0.87862 1.20746 0.75300 0.76037 0.88216 1.93212 1.87093 1.77080 1.58333 1.93163 1.30517 1.96237 1.96997 1.93145 1.89690 1.37473 1.96892 1.21610 1.00455 0.92314 1.01167 1.21618 0.94534 1.01832 0.96828 0.94331 0.90885 0.93155 0.95507 0.90846 0.93605 0.93000 0.94411 0.94754 0.91752 0.93680 0.97133 0.96832 0.93172 0.91764 0.91078 0.91757 0.88891 0.88049 0.91483 0.90392 0.91808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 8.25 60.06 0.50 0.69 16 2 N -0.53 -6.75 1.99 -234.89 -0.47 -7.22 16 3 C 0.06 0.95 3.88 -3.83 -0.01 0.94 16 4 C -0.05 -1.00 0.60 -154.51 -0.09 -1.10 16 5 C -0.11 -2.11 7.15 37.16 0.27 -1.85 16 6 C -0.14 -2.54 7.11 37.16 0.26 -2.27 16 7 C 0.03 0.86 4.04 -27.88 -0.11 0.75 16 8 C -0.51 -13.73 7.43 -34.44 -0.26 -13.98 16 9 H 0.06 1.55 5.80 -52.48 -0.30 1.25 16 10 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 11 N -0.90 -26.77 13.29 55.43 0.74 -26.04 16 12 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 14 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 15 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 16 C 0.08 0.84 2.22 -67.72 -0.15 0.69 16 17 H 0.04 0.42 8.14 -51.92 -0.42 -0.01 16 18 C -0.11 -0.93 5.21 -26.74 -0.14 -1.07 16 19 C -0.11 -1.05 4.80 -26.73 -0.13 -1.18 16 20 C -0.12 -1.22 2.17 -90.62 -0.20 -1.42 16 21 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 22 C 0.45 5.27 2.69 37.15 0.10 5.37 16 23 F -0.18 -2.40 16.28 2.25 0.04 -2.36 16 24 F -0.19 -2.34 16.80 2.25 0.04 -2.30 16 25 F -0.19 -2.21 16.80 2.25 0.04 -2.17 16 26 C -0.12 -1.34 4.80 -26.73 -0.13 -1.46 16 27 C -0.11 -1.16 4.99 -26.73 -0.13 -1.30 16 28 H 0.04 0.50 6.18 -51.93 -0.32 0.18 16 29 H 0.07 0.92 6.04 -51.93 -0.31 0.60 16 30 H 0.05 0.50 5.56 -51.93 -0.29 0.21 16 31 H 0.03 0.45 7.57 -51.93 -0.39 0.06 16 32 H 0.07 1.20 5.38 -51.93 -0.28 0.92 16 33 H 0.04 0.78 7.43 -51.93 -0.39 0.39 16 34 H 0.05 1.08 6.62 -51.93 -0.34 0.73 16 35 H 0.04 0.72 7.36 -51.93 -0.38 0.33 16 36 H 0.03 0.60 7.11 -51.92 -0.37 0.23 16 37 H 0.06 1.34 6.27 -51.93 -0.33 1.01 16 38 H 0.04 0.72 5.19 -51.93 -0.27 0.45 16 39 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.60 6.10 -51.93 -0.32 0.28 16 44 H 0.06 0.56 7.80 -51.93 -0.41 0.15 16 45 H 0.09 1.07 7.26 -51.93 -0.38 0.70 16 46 H 0.10 1.40 5.57 -51.93 -0.29 1.11 16 47 H 0.07 0.74 7.80 -51.93 -0.41 0.34 16 48 H 0.08 0.92 5.99 -51.93 -0.31 0.61 16 49 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 360.98 15.07 5.44 5.44 Total: -1.00 -28.70 360.98 -7.28 -35.98 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -7.75 Total: -2.24 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: -0.32 Total: -15.72 kcal Atomic # 7 Polarization: -33.53 SS G_CDS: 0.27 Total: -33.26 kcal Atomic # 9 Polarization: -6.95 SS G_CDS: 0.11 Total: -6.84 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -28.70 -7.28 -35.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578470621.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.984 kcal (2) G-P(sol) polarization free energy of solvation -28.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds