Wall clock time and date at job start Tue Mar 31 2020 13:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42905 * 114.00261 * 2 1 4 4 C 1.53001 * 109.47249 * 179.97438 * 3 2 1 5 5 N 1.46897 * 109.46718 * 67.26051 * 4 3 2 6 6 C 1.46899 * 111.00352 * 290.52161 * 5 4 3 7 7 C 1.50701 * 109.47254 * 299.83136 * 6 5 4 8 8 H 1.08007 * 119.99712 * 354.95403 * 7 6 5 9 9 C 1.37876 * 120.00216 * 174.95758 * 7 6 5 10 10 N 1.31512 * 119.99887 * 179.97438 * 9 7 6 11 11 Si 1.86799 * 119.99978 * 359.97438 * 9 7 6 12 12 H 1.48502 * 109.46997 * 89.99736 * 11 9 7 13 13 H 1.48496 * 109.47054 * 209.99679 * 11 9 7 14 14 H 1.48503 * 109.46917 * 329.99704 * 11 9 7 15 15 C 1.46900 * 111.00241 * 54.47864 * 5 4 3 16 16 C 1.50702 * 109.46973 * 66.04575 * 15 5 4 17 17 C 1.38290 * 119.97004 * 269.97819 * 16 15 5 18 18 C 1.38246 * 120.10857 * 180.02562 * 17 16 15 19 19 C 1.38163 * 120.05469 * 359.67525 * 18 17 16 20 20 C 1.38703 * 119.94631 * 0.62237 * 19 18 17 21 21 O 1.35904 * 120.05621 * 179.67806 * 20 19 18 22 22 C 1.42891 * 117.00041 * 359.72660 * 21 20 19 23 23 C 1.52999 * 109.47371 * 180.02562 * 22 21 20 24 24 C 1.52997 * 109.47022 * 64.99808 * 23 22 21 25 25 C 1.53004 * 109.47475 * 184.99745 * 23 22 21 26 26 C 1.38122 * 119.97473 * 89.99963 * 16 15 5 27 27 H 1.08999 * 109.47338 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47666 * 300.00014 * 1 2 3 29 29 H 1.09001 * 109.47211 * 60.00468 * 1 2 3 30 30 H 1.09001 * 109.46947 * 59.99684 * 3 2 1 31 31 H 1.08997 * 109.47004 * 300.00016 * 3 2 1 32 32 H 1.08996 * 109.47186 * 307.26220 * 4 3 2 33 33 H 1.08996 * 109.46601 * 187.25746 * 4 3 2 34 34 H 1.09004 * 109.46934 * 59.82525 * 6 5 4 35 35 H 1.08991 * 109.47594 * 179.82526 * 6 5 4 36 36 H 0.97002 * 119.99827 * 180.02562 * 10 9 7 37 37 H 1.08997 * 109.47429 * 306.04313 * 15 5 4 38 38 H 1.09005 * 109.46939 * 186.04358 * 15 5 4 39 39 H 1.07997 * 119.94148 * 359.97438 * 17 16 15 40 40 H 1.08001 * 119.96685 * 179.97438 * 18 17 16 41 41 H 1.08006 * 120.02135 * 180.30319 * 19 18 17 42 42 H 1.09002 * 109.47692 * 60.00035 * 22 21 20 43 43 H 1.09005 * 109.47137 * 300.00062 * 22 21 20 44 44 H 1.09000 * 109.47009 * 304.99446 * 23 22 21 45 45 H 1.09000 * 109.47446 * 60.00505 * 24 23 22 46 46 H 1.09003 * 109.46920 * 180.02562 * 24 23 22 47 47 H 1.09002 * 109.47384 * 300.00182 * 24 23 22 48 48 H 1.09008 * 109.46537 * 60.00015 * 25 23 22 49 49 H 1.08995 * 109.46895 * 179.97438 * 25 23 22 50 50 H 1.08997 * 109.46939 * 300.00337 * 25 23 22 51 51 H 1.08003 * 120.02737 * 0.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9817 0.6120 -1.2764 6 6 3.5912 -0.7999 -1.3855 7 6 4.2206 -1.5833 -0.2624 8 1 4.9122 -1.1000 0.4118 9 6 3.9135 -2.9171 -0.0956 10 7 4.4631 -3.6008 0.8841 11 14 2.7168 -3.7528 -1.2613 12 1 3.4631 -4.3242 -2.4110 13 1 2.0046 -4.8405 -0.5436 14 1 1.7313 -2.7581 -1.7559 15 6 3.4663 1.3899 -2.4109 16 6 4.0835 2.7647 -2.3992 17 6 3.4658 3.7935 -1.7119 18 6 4.0293 5.0558 -1.6997 19 6 5.2150 5.2908 -2.3689 20 6 5.8333 4.2622 -3.0642 21 8 6.9962 4.4925 -3.7287 22 6 7.5228 5.8197 -3.6738 23 6 8.8249 5.8853 -4.4746 24 6 8.5276 5.6286 -5.9533 25 6 9.4533 7.2710 -4.3138 26 6 5.2655 2.9962 -3.0753 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8482 0.5358 0.8187 33 1 3.9780 2.1722 0.1305 34 1 2.5062 -0.8826 -1.3226 35 1 3.9312 -1.1982 -2.3414 36 1 4.2473 -4.5393 1.0012 37 1 2.3829 1.4774 -2.3292 38 1 3.7208 0.8853 -3.3430 39 1 2.5413 3.6106 -1.1845 40 1 3.5447 5.8577 -1.1625 41 1 5.6572 6.2761 -2.3549 42 1 7.7200 6.0898 -2.6363 43 1 6.7996 6.5155 -4.0992 44 1 9.5166 5.1277 -4.1061 45 1 7.8360 6.3863 -6.3217 46 1 9.4553 5.6749 -6.5237 47 1 8.0799 4.6414 -6.0679 48 1 9.6651 7.4538 -3.2602 49 1 10.3811 7.3175 -4.8839 50 1 8.7617 8.0286 -4.6821 51 1 5.7471 2.1926 -3.6126 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611413776.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:37 Heat of formation + Delta-G solvation = -52.090773 kcal Electronic energy + Delta-G solvation = -27733.167730 eV Core-core repulsion = 24019.366227 eV Total energy + Delta-G solvation = -3713.801503 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.209 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.22332 -38.72426 -37.51485 -35.87802 -35.25727 -32.48692 -31.35730 -30.04463 -29.24046 -27.55092 -27.38821 -26.69061 -25.93073 -24.48401 -22.60407 -22.29273 -21.24320 -20.29681 -19.42338 -17.64594 -16.72754 -16.49036 -16.26340 -16.13304 -15.91068 -15.45764 -14.68486 -14.64269 -14.47268 -14.26991 -14.11740 -13.92444 -13.44866 -13.30924 -13.04348 -12.75737 -12.57028 -12.40160 -12.21927 -12.12323 -11.80106 -11.60975 -11.47754 -11.41416 -11.23918 -11.14773 -11.11081 -11.03330 -10.77359 -10.68109 -10.59331 -10.28444 -10.09737 -9.71641 -9.10989 -9.05368 -8.66436 -8.37379 -8.07627 -7.17035 -5.87699 -3.81351 1.45941 1.58170 3.12268 3.40376 3.46764 3.52135 3.87115 4.31508 4.45692 4.51598 4.59146 4.75667 4.87079 4.91511 5.00880 5.10230 5.12751 5.21052 5.25700 5.33962 5.41029 5.44873 5.47579 5.52312 5.52986 5.59634 5.60003 5.63462 5.70877 5.73476 5.78195 5.83052 5.94024 5.99148 6.01904 6.02699 6.10670 6.20805 6.26560 6.42246 6.52902 6.75504 6.80676 6.92888 7.08772 7.41251 7.49503 7.70005 7.76325 8.01665 8.17743 8.82274 9.19130 9.76036 11.26022 Molecular weight = 321.21amu Principal moments of inertia in cm(-1) A = 0.016505 B = 0.002894 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.076626 B = 9672.161862 C =10686.065180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.350 6.350 3 C 0.022 3.978 4 C 0.060 3.940 5 N -0.515 5.515 6 C 0.148 3.852 7 C -0.490 4.490 8 H 0.076 0.924 9 C 0.069 3.931 10 N -0.908 5.908 11 Si 0.873 3.127 12 H -0.281 1.281 13 H -0.291 1.291 14 H -0.263 1.263 15 C 0.079 3.921 16 C -0.021 4.021 17 C -0.155 4.155 18 C -0.083 4.083 19 C -0.218 4.218 20 C 0.128 3.872 21 O -0.313 6.313 22 C 0.065 3.935 23 C -0.096 4.096 24 C -0.147 4.147 25 C -0.146 4.146 26 C -0.130 4.130 27 H 0.079 0.921 28 H 0.033 0.967 29 H 0.030 0.970 30 H 0.040 0.960 31 H 0.043 0.957 32 H 0.102 0.898 33 H 0.073 0.927 34 H 0.032 0.968 35 H 0.014 0.986 36 H 0.260 0.740 37 H 0.041 0.959 38 H 0.077 0.923 39 H 0.119 0.881 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.082 0.918 45 H 0.052 0.948 46 H 0.055 0.945 47 H 0.064 0.936 48 H 0.057 0.943 49 H 0.063 0.937 50 H 0.056 0.944 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.393 22.353 -9.256 24.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.268 6.268 3 C -0.056 4.056 4 C -0.069 4.069 5 N -0.237 5.237 6 C 0.023 3.977 7 C -0.528 4.528 8 H 0.094 0.906 9 C -0.131 4.131 10 N -0.549 5.549 11 Si 0.701 3.299 12 H -0.207 1.207 13 H -0.217 1.217 14 H -0.188 1.188 15 C -0.049 4.049 16 C -0.022 4.022 17 C -0.174 4.174 18 C -0.102 4.102 19 C -0.237 4.237 20 C 0.083 3.917 21 O -0.227 6.227 22 C -0.011 4.011 23 C -0.115 4.115 24 C -0.204 4.204 25 C -0.203 4.203 26 C -0.149 4.149 27 H 0.098 0.902 28 H 0.052 0.948 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.120 0.880 33 H 0.091 0.909 34 H 0.049 0.951 35 H 0.032 0.968 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.096 0.904 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.139 0.861 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.101 0.899 45 H 0.071 0.929 46 H 0.074 0.926 47 H 0.083 0.917 48 H 0.077 0.923 49 H 0.082 0.918 50 H 0.076 0.924 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.151 21.871 -9.314 23.799 hybrid contribution -1.818 -0.093 -0.331 1.850 sum -0.667 21.778 -9.645 23.828 Atomic orbital electron populations 1.22705 0.83640 1.02186 0.98698 1.88404 1.17415 1.26349 1.94641 1.23436 0.97658 0.85697 0.98856 1.22274 0.89162 1.00268 0.95190 1.62194 1.58109 1.03970 0.99435 1.20510 0.96656 0.83219 0.97304 1.20925 1.25468 0.94181 1.12257 0.90574 1.24800 0.95847 0.97250 0.95192 1.69902 1.44639 1.08849 1.31493 0.86890 0.82363 0.79317 0.81352 1.20744 1.21705 1.18787 1.21169 0.96480 0.90339 0.96881 1.19724 0.93427 0.95196 0.93873 1.21004 1.01374 0.92889 1.02148 1.20816 0.94766 0.96756 0.97823 1.21104 0.99234 0.98724 1.04610 1.18955 0.85846 0.94174 0.92745 1.86054 1.36273 1.31177 1.69220 1.22848 0.95310 0.82761 1.00149 1.21131 0.95432 0.98626 0.96292 1.21817 1.01471 1.02511 0.94614 1.21781 1.00863 0.95521 1.02122 1.20308 0.96373 0.94503 1.03722 0.90197 0.94846 0.95169 0.94210 0.93892 0.88013 0.90919 0.95099 0.96784 0.93041 0.94077 0.90415 0.86351 0.86264 0.86144 0.92180 0.92294 0.89926 0.92853 0.92562 0.91668 0.92345 0.91754 0.92443 0.85104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 11.01 101.05 1.11 1.50 16 2 O -0.35 -7.05 7.57 -35.23 -0.27 -7.31 16 3 C 0.02 0.37 5.17 37.16 0.19 0.57 16 4 C 0.06 1.15 5.18 -3.83 -0.02 1.13 16 5 N -0.51 -10.78 4.74 -237.52 -1.13 -11.90 16 6 C 0.15 3.64 3.36 -4.98 -0.02 3.63 16 7 C -0.49 -14.11 8.78 -34.44 -0.30 -14.41 16 8 H 0.08 2.39 7.21 -52.48 -0.38 2.01 16 9 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 10 N -0.91 -28.56 13.96 55.43 0.77 -27.79 16 11 Si 0.87 22.27 27.57 -169.99 -4.69 17.58 16 12 H -0.28 -7.09 7.11 56.52 0.40 -6.68 16 13 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 14 H -0.26 -6.45 6.40 56.52 0.36 -6.09 16 15 C 0.08 1.36 4.80 -4.98 -0.02 1.34 16 16 C -0.02 -0.33 4.88 -104.64 -0.51 -0.84 16 17 C -0.16 -2.10 8.03 -39.56 -0.32 -2.42 16 18 C -0.08 -1.00 10.04 -39.61 -0.40 -1.40 16 19 C -0.22 -2.65 9.04 -39.44 -0.36 -3.01 16 20 C 0.13 1.78 6.69 -39.22 -0.26 1.52 16 21 O -0.31 -4.09 9.67 -19.44 -0.19 -4.28 16 22 C 0.06 0.61 4.12 37.16 0.15 0.76 16 23 C -0.10 -0.77 3.16 -90.62 -0.29 -1.06 16 24 C -0.15 -1.17 9.09 37.16 0.34 -0.83 16 25 C -0.15 -0.87 9.19 37.16 0.34 -0.53 16 26 C -0.13 -2.00 9.64 -39.43 -0.38 -2.38 16 27 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.04 0.67 4.46 -51.93 -0.23 0.43 16 32 H 0.10 2.31 6.33 -51.93 -0.33 1.98 16 33 H 0.07 1.26 6.53 -51.93 -0.34 0.92 16 34 H 0.03 0.78 4.00 -51.93 -0.21 0.57 16 35 H 0.01 0.35 7.73 -51.93 -0.40 -0.05 16 36 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 37 H 0.04 0.68 5.66 -51.93 -0.29 0.39 16 38 H 0.08 1.32 7.95 -51.93 -0.41 0.91 16 39 H 0.12 1.48 6.18 -52.49 -0.32 1.15 16 40 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 41 H 0.12 1.18 6.30 -52.48 -0.33 0.85 16 42 H 0.06 0.53 7.65 -51.93 -0.40 0.13 16 43 H 0.06 0.50 7.67 -51.93 -0.40 0.10 16 44 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 47 H 0.06 0.62 7.82 -51.93 -0.41 0.21 16 48 H 0.06 0.33 8.14 -51.92 -0.42 -0.09 16 49 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 50 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 51 H 0.13 2.04 8.06 -52.48 -0.42 1.62 16 LS Contribution 393.11 15.07 5.92 5.92 Total: -1.00 -32.67 393.11 -9.10 -41.78 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -8.70 Total: 0.48 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: -0.83 Total: -14.47 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: -0.35 Total: -39.69 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: -0.45 Total: -11.59 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.69 Total: 17.58 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.67 -9.10 -41.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611413776.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.315 kcal (2) G-P(sol) polarization free energy of solvation -32.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds