Wall clock time and date at job start Tue Mar 31 2020 13:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42905 * 114.00261 * 2 1 4 4 C 1.53001 * 109.47249 * 179.97438 * 3 2 1 5 5 N 1.46897 * 109.46718 * 67.26051 * 4 3 2 6 6 C 1.46899 * 111.00352 * 290.52161 * 5 4 3 7 7 C 1.50701 * 109.47254 * 299.83136 * 6 5 4 8 8 H 1.08007 * 119.99712 * 354.95403 * 7 6 5 9 9 C 1.37876 * 120.00216 * 174.95758 * 7 6 5 10 10 N 1.31512 * 119.99887 * 179.97438 * 9 7 6 11 11 Si 1.86799 * 119.99978 * 359.97438 * 9 7 6 12 12 H 1.48502 * 109.46997 * 89.99736 * 11 9 7 13 13 H 1.48496 * 109.47054 * 209.99679 * 11 9 7 14 14 H 1.48503 * 109.46917 * 329.99704 * 11 9 7 15 15 C 1.46900 * 111.00241 * 54.47864 * 5 4 3 16 16 C 1.50702 * 109.46973 * 66.04575 * 15 5 4 17 17 C 1.38290 * 119.97004 * 269.97819 * 16 15 5 18 18 C 1.38246 * 120.10857 * 180.02562 * 17 16 15 19 19 C 1.38163 * 120.05469 * 359.67525 * 18 17 16 20 20 C 1.38703 * 119.94631 * 0.62237 * 19 18 17 21 21 O 1.35904 * 120.05621 * 179.67806 * 20 19 18 22 22 C 1.42891 * 117.00041 * 359.72660 * 21 20 19 23 23 C 1.52999 * 109.47371 * 180.02562 * 22 21 20 24 24 C 1.52997 * 109.47022 * 64.99808 * 23 22 21 25 25 C 1.53004 * 109.47475 * 184.99745 * 23 22 21 26 26 C 1.38122 * 119.97473 * 89.99963 * 16 15 5 27 27 H 1.08999 * 109.47338 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47666 * 300.00014 * 1 2 3 29 29 H 1.09001 * 109.47211 * 60.00468 * 1 2 3 30 30 H 1.09001 * 109.46947 * 59.99684 * 3 2 1 31 31 H 1.08997 * 109.47004 * 300.00016 * 3 2 1 32 32 H 1.08996 * 109.47186 * 307.26220 * 4 3 2 33 33 H 1.08996 * 109.46601 * 187.25746 * 4 3 2 34 34 H 1.09004 * 109.46934 * 59.82525 * 6 5 4 35 35 H 1.08991 * 109.47594 * 179.82526 * 6 5 4 36 36 H 0.97002 * 119.99827 * 180.02562 * 10 9 7 37 37 H 1.08997 * 109.47429 * 306.04313 * 15 5 4 38 38 H 1.09005 * 109.46939 * 186.04358 * 15 5 4 39 39 H 1.07997 * 119.94148 * 359.97438 * 17 16 15 40 40 H 1.08001 * 119.96685 * 179.97438 * 18 17 16 41 41 H 1.08006 * 120.02135 * 180.30319 * 19 18 17 42 42 H 1.09002 * 109.47692 * 60.00035 * 22 21 20 43 43 H 1.09005 * 109.47137 * 300.00062 * 22 21 20 44 44 H 1.09000 * 109.47009 * 304.99446 * 23 22 21 45 45 H 1.09000 * 109.47446 * 60.00505 * 24 23 22 46 46 H 1.09003 * 109.46920 * 180.02562 * 24 23 22 47 47 H 1.09002 * 109.47384 * 300.00182 * 24 23 22 48 48 H 1.09008 * 109.46537 * 60.00015 * 25 23 22 49 49 H 1.08995 * 109.46895 * 179.97438 * 25 23 22 50 50 H 1.08997 * 109.46939 * 300.00337 * 25 23 22 51 51 H 1.08003 * 120.02737 * 0.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9817 0.6120 -1.2764 6 6 3.5912 -0.7999 -1.3855 7 6 4.2206 -1.5833 -0.2624 8 1 4.9122 -1.1000 0.4118 9 6 3.9135 -2.9171 -0.0956 10 7 4.4631 -3.6008 0.8841 11 14 2.7168 -3.7528 -1.2613 12 1 3.4631 -4.3242 -2.4110 13 1 2.0046 -4.8405 -0.5436 14 1 1.7313 -2.7581 -1.7559 15 6 3.4663 1.3899 -2.4109 16 6 4.0835 2.7647 -2.3992 17 6 3.4658 3.7935 -1.7119 18 6 4.0293 5.0558 -1.6997 19 6 5.2150 5.2908 -2.3689 20 6 5.8333 4.2622 -3.0642 21 8 6.9962 4.4925 -3.7287 22 6 7.5228 5.8197 -3.6738 23 6 8.8249 5.8853 -4.4746 24 6 8.5276 5.6286 -5.9533 25 6 9.4533 7.2710 -4.3138 26 6 5.2655 2.9962 -3.0753 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8482 0.5358 0.8187 33 1 3.9780 2.1722 0.1305 34 1 2.5062 -0.8826 -1.3226 35 1 3.9312 -1.1982 -2.3414 36 1 4.2473 -4.5393 1.0012 37 1 2.3829 1.4774 -2.3292 38 1 3.7208 0.8853 -3.3430 39 1 2.5413 3.6106 -1.1845 40 1 3.5447 5.8577 -1.1625 41 1 5.6572 6.2761 -2.3549 42 1 7.7200 6.0898 -2.6363 43 1 6.7996 6.5155 -4.0992 44 1 9.5166 5.1277 -4.1061 45 1 7.8360 6.3863 -6.3217 46 1 9.4553 5.6749 -6.5237 47 1 8.0799 4.6414 -6.0679 48 1 9.6651 7.4538 -3.2602 49 1 10.3811 7.3175 -4.8839 50 1 8.7617 8.0286 -4.6821 51 1 5.7471 2.1926 -3.6126 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611413776.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:36 Heat of formation + Delta-G solvation = -72.798572 kcal Electronic energy + Delta-G solvation = -27734.065687 eV Core-core repulsion = 24019.366227 eV Total energy + Delta-G solvation = -3714.699460 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.209 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.23934 -40.02472 -38.62736 -37.22793 -36.08993 -34.60750 -32.61155 -31.27980 -30.68810 -29.08557 -28.04767 -27.55258 -27.14702 -25.97044 -24.16822 -23.39996 -22.48420 -21.20088 -20.81098 -19.00645 -18.49320 -17.63143 -17.56676 -17.23926 -16.85799 -16.59934 -16.42058 -16.05683 -15.71390 -15.47743 -15.18937 -14.98960 -14.81631 -14.34844 -14.20867 -14.05361 -13.73075 -13.62978 -13.33304 -13.12565 -13.03962 -12.95983 -12.81325 -12.54507 -12.51969 -12.31992 -12.23175 -12.10791 -12.00526 -11.92556 -11.71993 -11.71088 -11.51004 -11.44735 -11.25478 -10.70739 -10.36797 -9.75988 -9.10295 -8.78190 -8.17245 -6.15381 0.40246 0.55380 1.36956 1.38830 1.51328 2.26204 2.43532 2.78439 3.01318 3.19282 3.50650 3.75897 3.86941 3.91333 3.98874 4.05472 4.12982 4.17749 4.27372 4.34983 4.40236 4.43718 4.50647 4.52975 4.55035 4.57060 4.59638 4.66032 4.70796 4.78879 4.81290 4.84979 4.87593 4.98556 5.01209 5.03256 5.12899 5.20553 5.29602 5.35695 5.39731 5.41861 5.47789 5.54020 5.65771 5.73616 5.89382 6.06928 6.39751 6.46976 6.54805 6.75824 6.87632 7.46005 9.00018 Molecular weight = 321.21amu Principal moments of inertia in cm(-1) A = 0.016505 B = 0.002894 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.076626 B = 9672.161862 C =10686.065180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.396 6.396 3 C 0.027 3.973 4 C 0.065 3.935 5 N -0.534 5.534 6 C 0.161 3.839 7 C -0.488 4.488 8 H 0.031 0.969 9 C 0.008 3.992 10 N -0.957 5.957 11 Si 0.942 3.058 12 H -0.274 1.274 13 H -0.287 1.287 14 H -0.245 1.245 15 C 0.085 3.915 16 C -0.036 4.036 17 C -0.159 4.159 18 C -0.076 4.076 19 C -0.212 4.212 20 C 0.119 3.881 21 O -0.333 6.333 22 C 0.058 3.942 23 C -0.097 4.097 24 C -0.146 4.146 25 C -0.140 4.140 26 C -0.155 4.155 27 H 0.075 0.925 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.093 0.907 34 H 0.036 0.964 35 H 0.008 0.992 36 H 0.262 0.738 37 H 0.054 0.946 38 H 0.072 0.928 39 H 0.133 0.867 40 H 0.155 0.845 41 H 0.148 0.852 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.069 0.931 45 H 0.061 0.939 46 H 0.066 0.934 47 H 0.042 0.958 48 H 0.062 0.938 49 H 0.071 0.929 50 H 0.067 0.933 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.353 25.468 -10.340 27.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.315 6.315 3 C -0.050 4.050 4 C -0.064 4.064 5 N -0.257 5.257 6 C 0.035 3.965 7 C -0.526 4.526 8 H 0.050 0.950 9 C -0.188 4.188 10 N -0.600 5.600 11 Si 0.766 3.234 12 H -0.199 1.199 13 H -0.213 1.213 14 H -0.168 1.168 15 C -0.042 4.042 16 C -0.036 4.036 17 C -0.178 4.178 18 C -0.094 4.094 19 C -0.231 4.231 20 C 0.074 3.926 21 O -0.247 6.247 22 C -0.017 4.017 23 C -0.115 4.115 24 C -0.203 4.203 25 C -0.198 4.198 26 C -0.174 4.174 27 H 0.094 0.906 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.111 0.889 34 H 0.054 0.946 35 H 0.026 0.974 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.090 0.910 39 H 0.150 0.850 40 H 0.172 0.828 41 H 0.166 0.834 42 H 0.086 0.914 43 H 0.092 0.908 44 H 0.088 0.912 45 H 0.080 0.920 46 H 0.085 0.915 47 H 0.061 0.939 48 H 0.081 0.919 49 H 0.090 0.910 50 H 0.086 0.914 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.596 25.023 -10.411 27.109 hybrid contribution -1.161 -0.923 0.042 1.483 sum -1.757 24.100 -10.369 26.295 Atomic orbital electron populations 1.22875 0.81360 1.02678 1.00733 1.88294 1.20066 1.28143 1.95030 1.23396 0.95465 0.85169 1.01009 1.22136 0.91517 0.99831 0.92876 1.62031 1.59430 1.02755 1.01447 1.20210 0.96282 0.85149 0.94845 1.21138 1.24349 0.94625 1.12501 0.95046 1.25695 0.97972 0.98070 0.97033 1.70064 1.46778 1.09311 1.33841 0.85792 0.80194 0.78359 0.79027 1.19924 1.21342 1.16816 1.21123 0.97167 0.90971 0.94939 1.19558 0.93914 0.94681 0.95464 1.21178 1.01818 0.93028 1.01754 1.21214 0.94304 0.96945 0.96932 1.21448 0.99061 0.99323 1.03271 1.19053 0.86289 0.94135 0.93129 1.86045 1.36067 1.33403 1.69182 1.23130 0.96056 0.81430 1.01066 1.21168 0.94699 0.99706 0.95936 1.21806 1.02053 1.01485 0.94960 1.21754 1.01214 0.94115 1.02688 1.20305 0.97106 0.95173 1.04822 0.90609 0.92813 0.93030 0.91826 0.91608 0.92554 0.88940 0.94629 0.97370 0.92965 0.92851 0.90982 0.84969 0.82777 0.83391 0.91352 0.90840 0.91229 0.91988 0.91522 0.93858 0.91871 0.91028 0.91444 0.86887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 11.01 113.37 1.25 1.82 16 2 O -0.40 -15.45 7.57 -148.98 -1.13 -16.58 16 3 C 0.03 0.88 5.17 71.98 0.37 1.25 16 4 C 0.06 2.51 5.18 86.30 0.45 2.96 16 5 N -0.53 -22.70 4.74 -905.38 -4.29 -26.99 16 6 C 0.16 8.05 3.36 85.56 0.29 8.33 16 7 C -0.49 -29.29 8.78 25.60 0.22 -29.06 16 8 H 0.03 2.11 7.21 -2.91 -0.02 2.09 16 9 C 0.01 0.48 5.47 84.65 0.46 0.94 16 10 N -0.96 -62.51 13.96 21.45 0.30 -62.21 16 11 Si 0.94 46.58 27.57 68.60 1.89 48.47 16 12 H -0.27 -13.12 7.11 99.48 0.71 -12.41 16 13 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 14 H -0.24 -11.26 6.40 99.48 0.64 -10.63 16 15 C 0.09 2.90 4.80 85.56 0.41 3.31 16 16 C -0.04 -1.06 4.88 -19.88 -0.10 -1.16 16 17 C -0.16 -3.86 8.03 22.28 0.18 -3.68 16 18 C -0.08 -1.54 10.04 22.25 0.22 -1.31 16 19 C -0.21 -4.54 9.04 22.36 0.20 -4.34 16 20 C 0.12 3.22 6.69 22.50 0.15 3.37 16 21 O -0.33 -8.57 9.67 -92.47 -0.89 -9.46 16 22 C 0.06 0.99 4.12 71.98 0.30 1.29 16 23 C -0.10 -1.44 3.16 -10.79 -0.03 -1.47 16 24 C -0.15 -2.20 9.09 71.98 0.65 -1.54 16 25 C -0.14 -1.36 9.19 71.98 0.66 -0.70 16 26 C -0.15 -4.81 9.64 22.36 0.22 -4.60 16 27 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.07 1.82 4.46 -2.39 -0.01 1.81 16 32 H 0.06 2.69 6.33 -2.39 -0.02 2.67 16 33 H 0.09 3.15 6.53 -2.39 -0.02 3.13 16 34 H 0.04 1.78 4.00 -2.38 -0.01 1.77 16 35 H 0.01 0.42 7.73 -2.39 -0.02 0.40 16 36 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16 37 H 0.05 1.67 5.66 -2.39 -0.01 1.66 16 38 H 0.07 2.47 7.95 -2.38 -0.02 2.46 16 39 H 0.13 2.79 6.18 -2.91 -0.02 2.78 16 40 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 41 H 0.15 2.29 6.30 -2.91 -0.02 2.27 16 42 H 0.07 1.05 7.65 -2.39 -0.02 1.04 16 43 H 0.07 1.05 7.67 -2.38 -0.02 1.03 16 44 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 47 H 0.04 0.83 7.82 -2.39 -0.02 0.81 16 48 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 49 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 50 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 51 H 0.11 3.77 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -74.48 393.11 2.61 -71.87 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: 0.82 Total: 19.49 kcal Atomic # 6 Polarization: -30.50 SS G_CDS: 5.91 Total: -24.60 kcal Atomic # 7 Polarization: -85.20 SS G_CDS: -3.99 Total: -89.20 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -2.02 Total: -26.04 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 1.89 Total: 48.47 kcal Total: -74.48 2.61 -71.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611413776.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.925 kcal (2) G-P(sol) polarization free energy of solvation -74.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds