Wall clock time and date at job start Tue Mar 31 2020 13:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.62269 * 2 1 4 4 C 1.51268 * 109.62832 * 239.62040 * 2 1 3 5 5 O 1.20769 * 120.84580 * 8.91253 * 4 2 1 6 6 C 1.51262 * 118.30300 * 188.93444 * 4 2 1 7 7 C 1.53232 * 108.53452 * 51.34781 * 6 4 2 8 8 C 1.52954 * 109.40663 * 305.37110 * 7 6 4 9 9 H 1.09001 * 109.41389 * 303.49932 * 8 7 6 10 10 C 1.50697 * 109.41606 * 183.63734 * 8 7 6 11 11 O 1.21279 * 119.99858 * 323.52403 * 10 8 7 12 12 N 1.34775 * 120.00267 * 143.52995 * 10 8 7 13 13 C 1.46936 * 120.62803 * 4.97916 * 12 10 8 14 14 C 1.52761 * 109.00539 * 233.58655 * 13 12 10 15 15 C 1.53042 * 109.38234 * 305.58614 * 14 13 12 16 16 C 1.53041 * 109.53814 * 61.24304 * 15 14 13 17 17 H 1.09007 * 109.49618 * 58.58339 * 16 15 14 18 18 C 1.50701 * 109.49897 * 178.67877 * 16 15 14 19 19 H 1.08006 * 119.99792 * 119.83884 * 18 16 15 20 20 C 1.37875 * 120.00039 * 299.83985 * 18 16 15 21 21 N 1.31513 * 120.00319 * 0.02562 * 20 18 16 22 22 Si 1.86805 * 119.99771 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47110 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47056 * 120.00273 * 22 20 18 25 25 H 1.48503 * 109.46725 * 240.00120 * 22 20 18 26 26 C 1.46926 * 120.63415 * 185.26094 * 12 10 8 27 27 C 1.52959 * 109.75899 * 63.56173 * 8 7 6 28 28 C 1.53000 * 109.47988 * 56.41850 * 27 8 7 29 29 C 1.53002 * 109.48337 * 176.45855 * 27 8 7 30 30 H 1.09002 * 109.46662 * 180.38464 * 1 2 3 31 31 H 1.09002 * 109.46884 * 300.37904 * 1 2 3 32 32 H 1.08993 * 109.47222 * 60.38280 * 1 2 3 33 33 H 1.08997 * 109.62904 * 291.63174 * 6 4 2 34 34 H 1.09003 * 109.62883 * 171.05931 * 6 4 2 35 35 H 1.09008 * 109.48086 * 185.39160 * 7 6 4 36 36 H 1.09001 * 109.49639 * 65.35789 * 7 6 4 37 37 H 1.08996 * 109.58614 * 353.42038 * 13 12 10 38 38 H 1.09002 * 109.58508 * 113.84529 * 13 12 10 39 39 H 1.08998 * 109.56484 * 185.55711 * 14 13 12 40 40 H 1.08990 * 109.38966 * 65.51527 * 14 13 12 41 41 H 1.08998 * 109.46513 * 301.22026 * 15 14 13 42 42 H 1.09002 * 109.45735 * 181.26356 * 15 14 13 43 43 H 0.97000 * 119.99904 * 180.02562 * 21 20 18 44 44 H 1.08998 * 109.58799 * 246.15795 * 26 12 10 45 45 H 1.09004 * 109.58445 * 6.43396 * 26 12 10 46 46 H 1.09003 * 109.47215 * 60.00589 * 28 27 8 47 47 H 1.08999 * 109.46865 * 179.97438 * 28 27 8 48 48 H 1.08999 * 109.47126 * 300.00050 * 28 27 8 49 49 H 1.08999 * 109.46870 * 64.90098 * 29 27 8 50 50 H 1.09000 * 109.47489 * 184.90117 * 29 27 8 51 51 H 1.08995 * 109.47067 * 304.90530 * 29 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0381 -0.7206 -1.2292 5 8 1.2813 -1.0509 -2.1104 6 6 3.5182 -1.0171 -1.3260 7 6 3.9608 -1.7143 -0.0353 8 6 3.5677 -0.8547 1.1672 9 1 4.0049 0.1381 1.0612 10 6 4.0812 -1.4959 2.4306 11 8 4.0860 -2.7038 2.5389 12 7 4.5350 -0.7270 3.4402 13 6 4.4353 0.7373 3.3692 14 6 5.8170 1.3423 3.6106 15 6 6.3792 0.8135 4.9322 16 6 6.5231 -0.7081 4.8549 17 1 7.1816 -0.9697 4.0265 18 6 7.1070 -1.2244 6.1447 19 1 6.5514 -1.9299 6.7448 20 6 8.3504 -0.7960 6.5588 21 7 9.0267 0.0635 5.8284 22 14 9.0737 -1.4354 8.1580 23 1 8.1203 -2.3832 8.7885 24 1 10.3542 -2.1333 7.8779 25 1 9.3215 -0.2972 9.0791 26 6 5.1443 -1.3367 4.6301 27 6 2.0447 -0.7342 1.2408 28 6 1.4246 -2.1316 1.3014 29 6 1.6550 0.0520 2.4942 30 1 -0.3633 -1.0277 0.0069 31 1 -0.3633 0.5197 0.8866 32 1 -0.3633 0.5078 -0.8933 33 1 4.0711 -0.0856 -1.4471 34 1 3.7057 -1.6707 -2.1780 35 1 5.0424 -1.8494 -0.0476 36 1 3.4739 -2.6867 0.0383 37 1 4.0762 1.0316 2.3831 38 1 3.7446 1.0940 4.1333 39 1 5.7368 2.4283 3.6580 40 1 6.4824 1.0620 2.7941 41 1 5.7012 1.0733 5.7451 42 1 7.3555 1.2617 5.1167 43 1 9.9016 0.3646 6.1196 44 1 4.5127 -1.1526 5.4991 45 1 5.2505 -2.4106 4.4765 46 1 1.7908 -2.6536 2.1855 47 1 0.3393 -2.0455 1.3544 48 1 1.7019 -2.6912 0.4081 49 1 2.0229 1.0746 2.4106 50 1 0.5695 0.0634 2.5933 51 1 2.0950 -0.4217 3.3717 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000617295041.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:04 Heat of formation + Delta-G solvation = -94.144927 kcal Electronic energy + Delta-G solvation = -29651.127925 eV Core-core repulsion = 25935.502817 eV Total energy + Delta-G solvation = -3715.625107 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.209 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.37765 -39.49704 -37.49999 -36.59685 -33.75926 -33.57185 -31.52640 -31.12983 -30.15852 -27.85153 -27.50436 -25.68929 -25.12525 -24.59601 -22.18856 -21.69087 -20.83678 -19.72265 -18.48496 -17.91777 -17.01327 -16.35883 -16.16102 -15.95848 -15.74657 -15.28796 -14.71510 -14.57295 -14.05364 -13.79813 -13.66033 -13.43488 -13.41994 -12.90535 -12.82148 -12.77974 -12.58002 -12.36573 -12.17404 -12.09835 -12.05118 -11.83897 -11.76492 -11.55354 -11.38077 -11.03536 -10.91711 -10.87281 -10.76396 -10.71377 -10.54018 -10.20737 -9.96591 -9.83471 -9.51132 -9.49368 -9.18516 -8.84232 -8.42545 -7.92888 -6.05965 -4.12953 1.77922 2.96919 3.26045 3.34435 3.37818 3.46408 3.82951 4.33798 4.39257 4.40067 4.47113 4.69195 4.87697 4.90509 5.00955 5.07088 5.15327 5.20795 5.24372 5.28109 5.37718 5.45154 5.53861 5.58415 5.63440 5.68443 5.72236 5.74374 5.77420 5.83976 5.85243 5.95309 6.01858 6.08173 6.10562 6.20600 6.28308 6.33750 6.37744 6.44002 6.62171 6.76267 6.92750 7.12164 7.28960 7.32035 7.65273 7.87158 7.97809 8.03387 8.33463 8.61637 8.91028 9.52356 10.99532 Molecular weight = 321.21amu Principal moments of inertia in cm(-1) A = 0.026338 B = 0.003224 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.855434 B = 8683.691212 C = 8730.133808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.130 4.130 3 H 0.105 0.895 4 C 0.367 3.633 5 O -0.457 6.457 6 C -0.169 4.169 7 C -0.101 4.101 8 C -0.108 4.108 9 H 0.097 0.903 10 C 0.520 3.480 11 O -0.547 6.547 12 N -0.600 5.600 13 C 0.106 3.894 14 C -0.137 4.137 15 C -0.112 4.112 16 C 0.040 3.960 17 H 0.029 0.971 18 C -0.514 4.514 19 H 0.057 0.943 20 C 0.063 3.937 21 N -0.889 5.889 22 Si 0.892 3.108 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 C 0.117 3.883 27 C -0.036 4.036 28 C -0.153 4.153 29 C -0.153 4.153 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.035 0.965 42 H 0.095 0.905 43 H 0.260 0.740 44 H 0.054 0.946 45 H 0.078 0.922 46 H 0.073 0.927 47 H 0.059 0.941 48 H 0.056 0.944 49 H 0.062 0.938 50 H 0.062 0.938 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.574 4.555 -11.112 18.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.149 4.149 3 H 0.123 0.877 4 C 0.242 3.758 5 O -0.330 6.330 6 C -0.207 4.207 7 C -0.138 4.138 8 C -0.129 4.129 9 H 0.115 0.885 10 C 0.308 3.692 11 O -0.425 6.425 12 N -0.332 5.332 13 C -0.017 4.017 14 C -0.176 4.176 15 C -0.150 4.150 16 C 0.021 3.979 17 H 0.047 0.953 18 C -0.552 4.552 19 H 0.076 0.924 20 C -0.138 4.138 21 N -0.527 5.527 22 Si 0.720 3.280 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.004 4.004 27 C -0.037 4.037 28 C -0.210 4.210 29 C -0.210 4.210 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.118 0.882 34 H 0.110 0.890 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.054 0.946 42 H 0.113 0.887 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.096 0.904 46 H 0.092 0.908 47 H 0.078 0.922 48 H 0.075 0.925 49 H 0.081 0.919 50 H 0.081 0.919 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.807 3.825 -11.497 18.370 hybrid contribution 0.739 -0.021 0.967 1.217 sum -13.068 3.804 -10.530 17.208 Atomic orbital electron populations 1.21759 0.93011 1.03002 1.02106 1.21910 0.98079 1.00768 0.94098 0.87688 1.24889 0.90890 0.74360 0.85633 1.90381 1.60153 1.42626 1.39805 1.22345 0.94865 1.03276 1.00228 1.21440 1.02608 0.99308 0.90483 1.21519 0.96052 1.01145 0.94220 0.88549 1.20174 0.77697 0.87152 0.84211 1.90653 1.56253 1.14204 1.81407 1.48329 1.58792 1.06608 1.19458 1.21845 0.98662 0.80181 1.01024 1.21958 0.95358 0.98828 1.01427 1.21621 1.01965 0.99124 0.92283 1.18970 0.89806 0.91763 0.97342 0.95320 1.21115 1.02125 1.25868 1.06117 0.92450 1.24931 0.96826 0.94949 0.97089 1.69878 1.13049 1.31890 1.37932 0.86535 0.79133 0.78768 0.83575 1.19720 1.21023 1.21043 1.21989 0.95888 0.98441 0.84034 1.20329 0.92590 0.96505 0.94290 1.22112 1.00372 0.95049 1.03434 1.22172 1.01973 0.99984 0.96868 0.91744 0.91659 0.92167 0.88231 0.89026 0.90169 0.89751 0.90780 0.91831 0.92487 0.92416 0.94605 0.88692 0.93033 0.92807 0.90383 0.90760 0.92162 0.92482 0.91881 0.91926 0.91347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 7.86 37.16 0.29 -0.93 16 2 C -0.13 -1.15 2.26 -91.45 -0.21 -1.36 16 3 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 4 C 0.37 3.87 5.60 -28.48 -0.16 3.71 16 5 O -0.46 -6.15 16.86 5.99 0.10 -6.05 16 6 C -0.17 -1.56 6.17 -27.49 -0.17 -1.72 16 7 C -0.10 -1.13 4.56 -26.63 -0.12 -1.25 16 8 C -0.11 -1.26 1.35 -91.82 -0.12 -1.39 16 9 H 0.10 0.97 5.83 -51.93 -0.30 0.67 16 10 C 0.52 8.38 5.02 -10.99 -0.06 8.33 16 11 O -0.55 -10.71 14.43 5.56 0.08 -10.63 16 12 N -0.60 -10.07 2.53 -173.03 -0.44 -10.51 16 13 C 0.11 1.46 4.31 -3.93 -0.02 1.45 16 14 C -0.14 -2.25 6.06 -26.83 -0.16 -2.42 16 15 C -0.11 -2.39 4.96 -26.69 -0.13 -2.52 16 16 C 0.04 0.95 2.25 -91.65 -0.21 0.74 16 17 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 18 C -0.51 -13.55 8.56 -34.44 -0.29 -13.84 16 19 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 20 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 21 N -0.89 -24.37 11.32 55.43 0.63 -23.74 16 22 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 C 0.12 2.41 5.64 -3.71 -0.02 2.39 16 27 C -0.04 -0.37 0.32 -154.48 -0.05 -0.42 16 28 C -0.15 -1.77 7.03 37.16 0.26 -1.51 16 29 C -0.15 -1.47 6.65 37.16 0.25 -1.22 16 30 H 0.06 0.61 6.30 -51.93 -0.33 0.29 16 31 H 0.06 0.47 6.76 -51.93 -0.35 0.12 16 32 H 0.06 0.53 8.04 -51.93 -0.42 0.11 16 33 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.08 0.94 8.14 -51.92 -0.42 0.51 16 36 H 0.08 1.06 6.03 -51.93 -0.31 0.75 16 37 H 0.07 0.80 4.26 -51.93 -0.22 0.58 16 38 H 0.06 0.83 8.10 -51.93 -0.42 0.41 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.09 2.33 6.05 -51.93 -0.31 2.02 16 43 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 44 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.08 1.74 7.04 -51.93 -0.37 1.37 16 46 H 0.07 1.03 6.49 -51.93 -0.34 0.70 16 47 H 0.06 0.61 6.33 -51.93 -0.33 0.28 16 48 H 0.06 0.68 5.60 -51.93 -0.29 0.39 16 49 H 0.06 0.51 6.94 -51.93 -0.36 0.15 16 50 H 0.06 0.53 6.86 -51.93 -0.36 0.17 16 51 H 0.07 0.82 6.06 -51.93 -0.31 0.50 16 LS Contribution 365.94 15.07 5.51 5.51 Total: -1.00 -29.90 365.94 -8.52 -38.42 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -8.37 Total: 1.64 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: -1.01 Total: -10.37 kcal Atomic # 7 Polarization: -34.44 SS G_CDS: 0.19 Total: -34.25 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: 0.18 Total: -16.67 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.90 -8.52 -38.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617295041.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.725 kcal (2) G-P(sol) polarization free energy of solvation -29.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds