Wall clock time and date at job start Tue Mar 31 2020 13:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.62269 * 2 1 4 4 C 1.51268 * 109.62832 * 239.62040 * 2 1 3 5 5 O 1.20769 * 120.84580 * 8.91253 * 4 2 1 6 6 C 1.51262 * 118.30300 * 188.93444 * 4 2 1 7 7 C 1.53232 * 108.53452 * 51.34781 * 6 4 2 8 8 C 1.52954 * 109.40663 * 305.37110 * 7 6 4 9 9 H 1.09001 * 109.41389 * 303.49932 * 8 7 6 10 10 C 1.50697 * 109.41606 * 183.63734 * 8 7 6 11 11 O 1.21279 * 119.99858 * 323.52403 * 10 8 7 12 12 N 1.34775 * 120.00267 * 143.52995 * 10 8 7 13 13 C 1.46936 * 120.62803 * 4.97916 * 12 10 8 14 14 C 1.52761 * 109.00539 * 233.58655 * 13 12 10 15 15 C 1.53042 * 109.38234 * 305.58614 * 14 13 12 16 16 C 1.53041 * 109.53814 * 61.24304 * 15 14 13 17 17 H 1.09007 * 109.49618 * 58.58339 * 16 15 14 18 18 C 1.50701 * 109.49897 * 178.67877 * 16 15 14 19 19 H 1.08006 * 119.99792 * 119.83884 * 18 16 15 20 20 C 1.37875 * 120.00039 * 299.83985 * 18 16 15 21 21 N 1.31513 * 120.00319 * 0.02562 * 20 18 16 22 22 Si 1.86805 * 119.99771 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47110 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47056 * 120.00273 * 22 20 18 25 25 H 1.48503 * 109.46725 * 240.00120 * 22 20 18 26 26 C 1.46926 * 120.63415 * 185.26094 * 12 10 8 27 27 C 1.52959 * 109.75899 * 63.56173 * 8 7 6 28 28 C 1.53000 * 109.47988 * 56.41850 * 27 8 7 29 29 C 1.53002 * 109.48337 * 176.45855 * 27 8 7 30 30 H 1.09002 * 109.46662 * 180.38464 * 1 2 3 31 31 H 1.09002 * 109.46884 * 300.37904 * 1 2 3 32 32 H 1.08993 * 109.47222 * 60.38280 * 1 2 3 33 33 H 1.08997 * 109.62904 * 291.63174 * 6 4 2 34 34 H 1.09003 * 109.62883 * 171.05931 * 6 4 2 35 35 H 1.09008 * 109.48086 * 185.39160 * 7 6 4 36 36 H 1.09001 * 109.49639 * 65.35789 * 7 6 4 37 37 H 1.08996 * 109.58614 * 353.42038 * 13 12 10 38 38 H 1.09002 * 109.58508 * 113.84529 * 13 12 10 39 39 H 1.08998 * 109.56484 * 185.55711 * 14 13 12 40 40 H 1.08990 * 109.38966 * 65.51527 * 14 13 12 41 41 H 1.08998 * 109.46513 * 301.22026 * 15 14 13 42 42 H 1.09002 * 109.45735 * 181.26356 * 15 14 13 43 43 H 0.97000 * 119.99904 * 180.02562 * 21 20 18 44 44 H 1.08998 * 109.58799 * 246.15795 * 26 12 10 45 45 H 1.09004 * 109.58445 * 6.43396 * 26 12 10 46 46 H 1.09003 * 109.47215 * 60.00589 * 28 27 8 47 47 H 1.08999 * 109.46865 * 179.97438 * 28 27 8 48 48 H 1.08999 * 109.47126 * 300.00050 * 28 27 8 49 49 H 1.08999 * 109.46870 * 64.90098 * 29 27 8 50 50 H 1.09000 * 109.47489 * 184.90117 * 29 27 8 51 51 H 1.08995 * 109.47067 * 304.90530 * 29 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0381 -0.7206 -1.2292 5 8 1.2813 -1.0509 -2.1104 6 6 3.5182 -1.0171 -1.3260 7 6 3.9608 -1.7143 -0.0353 8 6 3.5677 -0.8547 1.1672 9 1 4.0049 0.1381 1.0612 10 6 4.0812 -1.4959 2.4306 11 8 4.0860 -2.7038 2.5389 12 7 4.5350 -0.7270 3.4402 13 6 4.4353 0.7373 3.3692 14 6 5.8170 1.3423 3.6106 15 6 6.3792 0.8135 4.9322 16 6 6.5231 -0.7081 4.8549 17 1 7.1816 -0.9697 4.0265 18 6 7.1070 -1.2244 6.1447 19 1 6.5514 -1.9299 6.7448 20 6 8.3504 -0.7960 6.5588 21 7 9.0267 0.0635 5.8284 22 14 9.0737 -1.4354 8.1580 23 1 8.1203 -2.3832 8.7885 24 1 10.3542 -2.1333 7.8779 25 1 9.3215 -0.2972 9.0791 26 6 5.1443 -1.3367 4.6301 27 6 2.0447 -0.7342 1.2408 28 6 1.4246 -2.1316 1.3014 29 6 1.6550 0.0520 2.4942 30 1 -0.3633 -1.0277 0.0069 31 1 -0.3633 0.5197 0.8866 32 1 -0.3633 0.5078 -0.8933 33 1 4.0711 -0.0856 -1.4471 34 1 3.7057 -1.6707 -2.1780 35 1 5.0424 -1.8494 -0.0476 36 1 3.4739 -2.6867 0.0383 37 1 4.0762 1.0316 2.3831 38 1 3.7446 1.0940 4.1333 39 1 5.7368 2.4283 3.6580 40 1 6.4824 1.0620 2.7941 41 1 5.7012 1.0733 5.7451 42 1 7.3555 1.2617 5.1167 43 1 9.9016 0.3646 6.1196 44 1 4.5127 -1.1526 5.4991 45 1 5.2505 -2.4106 4.4765 46 1 1.7908 -2.6536 2.1855 47 1 0.3393 -2.0455 1.3544 48 1 1.7019 -2.6912 0.4081 49 1 2.0229 1.0746 2.4106 50 1 0.5695 0.0634 2.5933 51 1 2.0950 -0.4217 3.3717 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000617295041.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:03 Heat of formation + Delta-G solvation = -110.459212 kcal Electronic energy + Delta-G solvation = -29651.835365 eV Core-core repulsion = 25935.502817 eV Total energy + Delta-G solvation = -3716.332548 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.209 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.35987 -40.63801 -38.71468 -37.86948 -35.35630 -34.58893 -33.08165 -32.29798 -31.51644 -28.85264 -28.36609 -26.95021 -26.46005 -25.96170 -23.47042 -23.02310 -21.74569 -21.13487 -19.66858 -18.95596 -18.51382 -17.93367 -17.20141 -16.89704 -16.69857 -16.57987 -16.30756 -15.63516 -15.31365 -15.05560 -15.01409 -14.61449 -14.45212 -14.32418 -14.16420 -13.74926 -13.63948 -13.52319 -13.44161 -13.09316 -12.92932 -12.84286 -12.80145 -12.75287 -12.61500 -12.52265 -12.38232 -12.18749 -11.92521 -11.80023 -11.72849 -11.57026 -11.55344 -11.28906 -11.12896 -10.79619 -10.49233 -10.35189 -10.30354 -9.40464 -8.10155 -6.24633 0.97996 1.39183 1.42127 1.52685 1.71345 2.15739 2.44349 3.07180 3.16552 3.43947 3.53935 3.58659 3.79890 3.94986 4.12347 4.18915 4.22829 4.28078 4.31700 4.35416 4.39434 4.48804 4.55632 4.59918 4.66696 4.70173 4.78932 4.84339 4.86352 4.91598 4.93199 4.97611 5.02436 5.05461 5.07304 5.10140 5.14127 5.16861 5.23695 5.26856 5.34844 5.46113 5.50197 5.53386 5.62392 5.64207 5.96689 6.17320 6.37254 6.53819 6.65692 6.85383 7.31655 7.43514 8.93269 Molecular weight = 321.21amu Principal moments of inertia in cm(-1) A = 0.026338 B = 0.003224 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.855434 B = 8683.691212 C = 8730.133808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.122 4.122 3 H 0.141 0.859 4 C 0.367 3.633 5 O -0.490 6.490 6 C -0.162 4.162 7 C -0.099 4.099 8 C -0.099 4.099 9 H 0.127 0.873 10 C 0.516 3.484 11 O -0.590 6.590 12 N -0.603 5.603 13 C 0.106 3.894 14 C -0.130 4.130 15 C -0.106 4.106 16 C 0.042 3.958 17 H -0.013 1.013 18 C -0.537 4.537 19 H 0.049 0.951 20 C 0.019 3.981 21 N -0.911 5.911 22 Si 0.951 3.049 23 H -0.270 1.270 24 H -0.283 1.283 25 H -0.276 1.276 26 C 0.132 3.868 27 C -0.029 4.029 28 C -0.151 4.151 29 C -0.154 4.154 30 H 0.048 0.952 31 H 0.084 0.916 32 H 0.059 0.941 33 H 0.131 0.869 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.119 0.881 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.047 0.953 41 H 0.035 0.965 42 H 0.060 0.940 43 H 0.261 0.739 44 H 0.057 0.943 45 H 0.048 0.952 46 H 0.043 0.957 47 H 0.073 0.927 48 H 0.045 0.955 49 H 0.090 0.910 50 H 0.076 0.924 51 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.984 7.316 -11.839 20.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.141 4.141 3 H 0.159 0.841 4 C 0.245 3.755 5 O -0.366 6.366 6 C -0.200 4.200 7 C -0.137 4.137 8 C -0.120 4.120 9 H 0.145 0.855 10 C 0.306 3.694 11 O -0.471 6.471 12 N -0.334 5.334 13 C -0.015 4.015 14 C -0.168 4.168 15 C -0.144 4.144 16 C 0.023 3.977 17 H 0.006 0.994 18 C -0.576 4.576 19 H 0.067 0.933 20 C -0.180 4.180 21 N -0.550 5.550 22 Si 0.777 3.223 23 H -0.195 1.195 24 H -0.209 1.209 25 H -0.202 1.202 26 C 0.009 3.991 27 C -0.030 4.030 28 C -0.208 4.208 29 C -0.210 4.210 30 H 0.067 0.933 31 H 0.103 0.897 32 H 0.078 0.922 33 H 0.149 0.851 34 H 0.109 0.891 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.136 0.864 38 H 0.101 0.899 39 H 0.109 0.891 40 H 0.065 0.935 41 H 0.054 0.946 42 H 0.078 0.922 43 H 0.070 0.930 44 H 0.075 0.925 45 H 0.067 0.933 46 H 0.063 0.937 47 H 0.091 0.909 48 H 0.064 0.936 49 H 0.109 0.891 50 H 0.095 0.905 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -15.224 6.609 -12.227 20.615 hybrid contribution 1.202 -0.972 1.203 1.959 sum -14.022 5.637 -11.025 18.707 Atomic orbital electron populations 1.21766 0.92710 1.02348 1.03031 1.21938 0.98292 1.01983 0.91884 0.84118 1.25264 0.91122 0.73452 0.85667 1.90385 1.60892 1.44058 1.41248 1.22330 0.94470 1.04496 0.98682 1.21378 1.01989 0.98711 0.91635 1.21579 0.97209 1.01921 0.91298 0.85540 1.21014 0.76627 0.86690 0.85052 1.90637 1.57786 1.16454 1.82208 1.48355 1.58459 1.08178 1.18401 1.22109 0.97444 0.77694 1.04240 1.21875 0.96360 1.00840 0.97728 1.21412 1.00545 0.96952 0.95478 1.18867 0.90448 0.93875 0.94527 0.99443 1.21479 1.02773 1.25987 1.07326 0.93262 1.25635 0.97213 0.95190 1.00009 1.70004 1.13223 1.32588 1.39214 0.85612 0.78161 0.78370 0.80146 1.19489 1.20944 1.20161 1.21480 0.94715 0.96806 0.86083 1.20286 0.91098 0.95802 0.95812 1.22077 1.01266 0.95989 1.01418 1.22198 1.02993 1.00884 0.94972 0.93290 0.89717 0.92212 0.85074 0.89054 0.90873 0.91948 0.86356 0.89936 0.89135 0.93456 0.94594 0.92155 0.92980 0.92519 0.93291 0.93749 0.90856 0.93595 0.89094 0.90516 0.93838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 7.86 71.98 0.57 -1.39 16 2 C -0.12 -1.67 2.26 -11.33 -0.03 -1.70 16 3 H 0.14 1.04 8.14 -2.39 -0.02 1.02 16 4 C 0.37 6.75 5.60 29.46 0.17 6.91 16 5 O -0.49 -12.41 16.86 -1.48 -0.02 -12.43 16 6 C -0.16 -2.55 6.17 30.10 0.19 -2.36 16 7 C -0.10 -2.11 4.56 30.66 0.14 -1.97 16 8 C -0.10 -2.07 1.35 -11.57 -0.02 -2.08 16 9 H 0.13 1.88 5.83 -2.39 -0.01 1.86 16 10 C 0.52 16.41 5.02 87.66 0.44 16.85 16 11 O -0.59 -24.07 14.43 -3.03 -0.04 -24.11 16 12 N -0.60 -19.70 2.53 -819.73 -2.07 -21.78 16 13 C 0.11 2.55 4.31 86.22 0.37 2.92 16 14 C -0.13 -3.93 6.06 30.53 0.19 -3.74 16 15 C -0.11 -4.51 4.96 30.62 0.15 -4.36 16 16 C 0.04 2.05 2.25 -11.46 -0.03 2.02 16 17 H -0.01 -0.71 8.14 -2.38 -0.02 -0.73 16 18 C -0.54 -29.35 8.56 25.60 0.22 -29.13 16 19 H 0.05 2.69 7.74 -2.91 -0.02 2.67 16 20 C 0.02 1.02 5.30 84.65 0.45 1.47 16 21 N -0.91 -51.16 11.32 21.45 0.24 -50.91 16 22 Si 0.95 43.20 29.54 68.60 2.03 45.23 16 23 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 24 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 25 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 26 C 0.13 5.58 5.64 86.36 0.49 6.07 16 27 C -0.03 -0.51 0.32 -52.16 -0.02 -0.53 16 28 C -0.15 -3.40 7.03 71.98 0.51 -2.90 16 29 C -0.15 -2.32 6.65 71.98 0.48 -1.84 16 30 H 0.05 0.83 6.30 -2.39 -0.02 0.81 16 31 H 0.08 0.85 6.76 -2.39 -0.02 0.83 16 32 H 0.06 0.86 8.04 -2.39 -0.02 0.84 16 33 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 36 H 0.06 1.60 6.03 -2.39 -0.01 1.59 16 37 H 0.12 1.82 4.26 -2.39 -0.01 1.81 16 38 H 0.08 1.76 8.10 -2.39 -0.02 1.74 16 39 H 0.09 2.18 8.14 -2.39 -0.02 2.17 16 40 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.06 3.01 6.05 -2.39 -0.01 2.99 16 43 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 44 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 45 H 0.05 2.32 7.04 -2.38 -0.02 2.30 16 46 H 0.04 1.27 6.49 -2.39 -0.02 1.25 16 47 H 0.07 1.42 6.33 -2.39 -0.02 1.41 16 48 H 0.05 1.12 5.60 -2.39 -0.01 1.10 16 49 H 0.09 0.89 6.94 -2.39 -0.02 0.87 16 50 H 0.08 0.97 6.86 -2.39 -0.02 0.96 16 51 H 0.04 0.91 6.06 -2.39 -0.01 0.90 16 Total: -1.00 -70.70 365.94 5.31 -65.39 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: 0.92 Total: 14.36 kcal Atomic # 6 Polarization: -20.00 SS G_CDS: 4.26 Total: -15.74 kcal Atomic # 7 Polarization: -70.86 SS G_CDS: -1.83 Total: -72.69 kcal Atomic # 8 Polarization: -36.48 SS G_CDS: -0.07 Total: -36.54 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -70.70 5.31 -65.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617295041.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.073 kcal (2) G-P(sol) polarization free energy of solvation -70.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds