Wall clock time and date at job start Tue Mar 31 2020 13:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86805 * 119.99931 * 2 1 4 4 H 1.48496 * 109.47249 * 270.28062 * 3 2 1 5 5 H 1.48503 * 109.46827 * 30.27738 * 3 2 1 6 6 H 1.48501 * 109.47216 * 150.27543 * 3 2 1 7 7 C 1.38814 * 120.00322 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99453 * 342.73278 * 7 2 1 9 9 N 1.36932 * 120.00130 * 162.73907 * 7 2 1 10 10 C 1.46965 * 120.59297 * 328.46880 * 9 7 2 11 11 C 1.53365 * 108.63892 * 235.20796 * 10 9 7 12 12 N 1.46967 * 108.63751 * 310.57862 * 11 10 9 13 13 C 1.34779 * 120.59428 * 235.20366 * 12 11 10 14 14 O 1.21278 * 119.99871 * 359.97438 * 13 12 11 15 15 C 1.50699 * 119.99622 * 179.97438 * 13 12 11 16 16 H 1.08997 * 110.42499 * 302.31191 * 15 13 12 17 17 C 1.54908 * 110.37419 * 64.63117 * 15 13 12 18 18 C 1.55138 * 101.65647 * 155.89661 * 17 15 13 19 19 C 1.54323 * 103.01695 * 324.34591 * 18 17 15 20 20 N 1.47446 * 107.23546 * 22.28172 * 19 18 17 21 21 C 1.46897 * 110.99715 * 123.25899 * 20 19 18 22 22 C 1.54262 * 110.48421 * 169.60080 * 21 20 19 23 23 C 1.53876 * 106.59939 * 217.71045 * 22 21 20 24 24 C 1.54262 * 106.59493 * 0.02562 * 23 22 21 25 25 C 1.54881 * 104.19975 * 23.60650 * 24 23 22 26 26 C 1.46961 * 118.81068 * 55.47172 * 12 11 10 27 27 C 1.46961 * 120.59650 * 148.45233 * 9 7 2 28 28 H 0.96994 * 119.99841 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.61278 * 115.46298 * 10 9 7 30 30 H 1.09003 * 109.60957 * 354.95758 * 10 9 7 31 31 H 1.09003 * 109.61558 * 190.83084 * 11 10 9 32 32 H 1.09002 * 109.75378 * 70.40123 * 11 10 9 33 33 H 1.09005 * 110.99215 * 37.80123 * 17 15 13 34 34 H 1.09005 * 110.98703 * 273.99015 * 17 15 13 35 35 H 1.09000 * 110.70850 * 205.96329 * 18 17 15 36 36 H 1.08996 * 110.85361 * 82.79496 * 18 17 15 37 37 H 1.09007 * 109.88651 * 262.87859 * 19 18 17 38 38 H 1.08998 * 109.89161 * 141.69222 * 19 18 17 39 39 H 1.08997 * 110.53718 * 292.21000 * 21 20 19 40 40 H 1.09003 * 110.03391 * 98.42575 * 22 21 20 41 41 H 1.09006 * 110.03402 * 336.99462 * 22 21 20 42 42 H 1.09009 * 110.03216 * 119.28218 * 23 22 21 43 43 H 1.08995 * 110.03269 * 240.66505 * 23 22 21 44 44 H 1.09001 * 110.48750 * 142.28965 * 24 23 22 45 45 H 1.09001 * 110.48527 * 264.92682 * 24 23 22 46 46 H 1.09005 * 110.75437 * 80.37260 * 25 24 23 47 47 H 1.08999 * 110.76188 * 203.55748 * 25 24 23 48 48 H 1.08999 * 109.60776 * 64.27047 * 26 12 11 49 49 H 1.08999 * 109.60953 * 184.77956 * 26 12 11 50 50 H 1.09003 * 109.61349 * 244.53318 * 27 9 7 51 51 H 1.09005 * 109.61099 * 5.04843 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4918 2.0499 -1.4000 5 1 1.4505 2.6510 0.7059 6 1 3.5507 1.4386 0.6942 7 6 2.0103 -1.2021 -0.0005 8 1 1.5068 -2.1164 0.2767 9 7 3.3334 -1.2286 -0.3524 10 6 3.8650 -0.2748 -1.3360 11 6 4.5466 -1.0611 -2.4626 12 7 5.4605 -2.0437 -1.8633 13 6 6.7627 -2.0698 -2.2097 14 8 7.1897 -1.2780 -3.0231 15 6 7.6880 -3.0828 -1.5863 16 1 7.6862 -2.9824 -0.5010 17 6 7.2716 -4.5175 -1.9960 18 6 8.6055 -5.2914 -1.8267 19 6 9.6649 -4.2579 -2.2639 20 7 9.0590 -2.9219 -2.1158 21 6 9.8683 -2.0720 -1.2322 22 6 9.3756 -0.6112 -1.2886 23 6 10.6292 0.2784 -1.2198 24 6 11.8399 -0.6728 -1.1247 25 6 11.3299 -1.9995 -1.7401 26 6 4.9277 -3.0012 -0.8840 27 6 4.2473 -2.2112 0.2469 28 1 -0.4849 0.8400 0.0004 29 1 4.5921 0.3797 -0.8550 30 1 3.0492 0.3201 -1.7467 31 1 5.1100 -0.3771 -3.0973 32 1 3.7942 -1.5775 -3.0588 33 1 6.9330 -4.5451 -3.0317 34 1 6.5058 -4.9081 -1.3259 35 1 8.6290 -6.1660 -2.4768 36 1 8.7564 -5.5816 -0.7870 37 1 9.9402 -4.4269 -3.3050 38 1 10.5461 -4.3381 -1.6274 39 1 9.8374 -2.4457 -0.2088 40 1 8.7237 -0.4040 -0.4399 41 1 8.8419 -0.4329 -2.2222 42 1 10.7040 0.8885 -2.1201 43 1 10.5853 0.9180 -0.3383 44 1 12.6782 -0.2822 -1.7015 45 1 12.1278 -0.8209 -0.0839 46 1 11.3592 -1.9567 -2.8289 47 1 11.9117 -2.8447 -1.3724 48 1 4.2000 -3.6526 -1.3678 49 1 5.7428 -3.5987 -0.4758 50 1 5.0016 -1.6947 0.8406 51 1 3.6839 -2.8953 0.8816 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948755708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:28 Heat of formation + Delta-G solvation = 6.170062 kcal Electronic energy + Delta-G solvation = -29443.082803 eV Core-core repulsion = 25764.100431 eV Total energy + Delta-G solvation = -3678.982372 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.57263 -38.80464 -37.01280 -36.71392 -34.00346 -31.71464 -31.40450 -31.05238 -29.68467 -28.43834 -27.05702 -26.78249 -23.79253 -23.54759 -22.18692 -21.77583 -20.66528 -20.03614 -19.78720 -18.66535 -17.38043 -16.74826 -16.45614 -15.85719 -15.44306 -15.18850 -14.92570 -14.63421 -14.32093 -14.21904 -13.81422 -13.59511 -13.48554 -13.31676 -13.05714 -12.83506 -12.70792 -12.42760 -12.20597 -12.04200 -11.80193 -11.55445 -11.28527 -11.14687 -11.07811 -11.00174 -10.99174 -10.91181 -10.87070 -10.71220 -10.42976 -10.42254 -10.28102 -9.98874 -9.61513 -9.28345 -8.82885 -8.36135 -8.25981 -6.95656 -6.01867 -3.44002 2.94075 3.13831 3.28517 3.44981 3.47880 3.89359 4.27408 4.44038 4.46727 4.57631 4.58682 4.72229 4.81330 4.85985 4.95554 5.02379 5.21208 5.23668 5.26640 5.38158 5.46659 5.47785 5.50569 5.54300 5.55297 5.59926 5.62966 5.63942 5.72463 5.76894 5.82912 5.84373 5.87872 5.99891 6.02158 6.03557 6.10625 6.15298 6.22295 6.27734 6.40125 6.48654 6.53417 6.67366 6.76999 6.99479 7.08091 7.81838 7.90423 8.26518 8.58085 8.84570 9.63143 10.01188 11.13807 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.017321 B = 0.003903 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.125324 B = 7172.299444 C = 8207.036595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.028 3.972 3 Si 0.885 3.115 4 H -0.285 1.285 5 H -0.302 1.302 6 H -0.272 1.272 7 C -0.266 4.266 8 H 0.086 0.914 9 N -0.605 5.605 10 C 0.114 3.886 11 C 0.099 3.901 12 N -0.601 5.601 13 C 0.521 3.479 14 O -0.527 6.527 15 C 0.057 3.943 16 H 0.076 0.924 17 C -0.122 4.122 18 C -0.141 4.141 19 C 0.043 3.957 20 N -0.500 5.500 21 C 0.079 3.921 22 C -0.133 4.133 23 C -0.120 4.120 24 C -0.123 4.123 25 C -0.114 4.114 26 C 0.085 3.915 27 C 0.134 3.866 28 H 0.264 0.736 29 H 0.029 0.971 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.058 0.942 39 H 0.042 0.958 40 H 0.051 0.949 41 H 0.107 0.893 42 H 0.063 0.937 43 H 0.058 0.942 44 H 0.064 0.936 45 H 0.062 0.938 46 H 0.078 0.922 47 H 0.061 0.939 48 H 0.070 0.930 49 H 0.077 0.923 50 H 0.026 0.974 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.571 -9.032 -2.173 23.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.171 4.171 3 Si 0.715 3.285 4 H -0.213 1.213 5 H -0.230 1.230 6 H -0.197 1.197 7 C -0.394 4.394 8 H 0.103 0.897 9 N -0.329 5.329 10 C -0.013 4.013 11 C -0.025 4.025 12 N -0.335 5.335 13 C 0.308 3.692 14 O -0.404 6.404 15 C -0.055 4.055 16 H 0.094 0.906 17 C -0.160 4.160 18 C -0.180 4.180 19 C -0.084 4.084 20 N -0.224 5.224 21 C -0.030 4.030 22 C -0.171 4.171 23 C -0.158 4.158 24 C -0.161 4.161 25 C -0.152 4.152 26 C -0.040 4.040 27 C 0.007 3.993 28 H 0.074 0.926 29 H 0.047 0.953 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.076 0.924 39 H 0.060 0.940 40 H 0.070 0.930 41 H 0.125 0.875 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.080 0.920 46 H 0.097 0.903 47 H 0.079 0.921 48 H 0.089 0.911 49 H 0.095 0.905 50 H 0.044 0.956 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 21.603 -8.251 -3.065 23.327 hybrid contribution 0.306 0.594 0.981 1.187 sum 21.909 -7.657 -2.084 23.302 Atomic orbital electron populations 1.69794 1.05732 1.26730 1.52700 1.25369 0.95238 0.97698 0.98814 0.86929 0.79786 0.84390 0.77378 1.21292 1.22963 1.19683 1.18893 0.83128 0.94404 1.42970 0.89664 1.44253 1.06584 1.37285 1.44755 1.21747 0.97145 0.92391 0.89972 1.22178 0.92012 0.91741 0.96592 1.47980 1.08041 1.34594 1.42912 1.20196 0.81938 0.84690 0.82425 1.90570 1.75122 1.40777 1.33887 1.22449 0.89950 0.94929 0.98139 0.90585 1.22831 0.97768 0.92209 1.03166 1.22799 0.94784 0.98615 1.01786 1.22847 0.96575 0.87169 1.01841 1.63231 0.99979 1.11742 1.47422 1.22682 0.92965 0.94114 0.93199 1.22469 0.97542 0.92532 1.04526 1.22071 0.94391 0.97834 1.01524 1.22305 0.97814 0.95485 1.00457 1.22564 0.94022 0.97079 1.01562 1.22609 0.98280 0.91745 0.91333 1.21403 0.92877 0.92290 0.92744 0.92606 0.95287 0.89954 0.89794 0.91376 0.90052 0.89523 0.90389 0.91251 0.90371 0.92371 0.93974 0.92972 0.87460 0.91824 0.92302 0.91694 0.91953 0.90321 0.92075 0.91130 0.90504 0.95603 0.90639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.30 13.97 55.49 0.78 -26.52 16 2 C 0.03 0.81 5.27 -17.43 -0.09 0.71 16 3 Si 0.88 22.28 24.36 -169.99 -4.14 18.14 16 4 H -0.29 -6.94 6.57 56.52 0.37 -6.57 16 5 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 6 H -0.27 -6.82 6.73 56.52 0.38 -6.44 16 7 C -0.27 -7.18 10.02 -15.06 -0.15 -7.33 16 8 H 0.09 2.44 8.06 -52.49 -0.42 2.02 16 9 N -0.60 -13.87 2.69 -171.76 -0.46 -14.34 16 10 C 0.11 2.48 4.35 -3.60 -0.02 2.47 16 11 C 0.10 1.86 6.59 -3.60 -0.02 1.84 16 12 N -0.60 -10.12 2.94 -172.22 -0.51 -10.62 16 13 C 0.52 8.52 6.55 -10.99 -0.07 8.45 16 14 O -0.53 -10.16 13.20 5.56 0.07 -10.09 16 15 C 0.06 0.72 1.68 -67.34 -0.11 0.61 16 16 H 0.08 0.94 7.19 -51.93 -0.37 0.56 16 17 C -0.12 -1.24 5.66 -24.59 -0.14 -1.38 16 18 C -0.14 -1.16 6.94 -24.91 -0.17 -1.33 16 19 C 0.04 0.41 6.28 -2.83 -0.02 0.39 16 20 N -0.50 -6.17 4.25 -214.85 -0.91 -7.08 16 21 C 0.08 0.92 2.28 -66.05 -0.15 0.77 16 22 C -0.13 -1.79 5.47 -25.61 -0.14 -1.94 16 23 C -0.12 -1.34 6.80 -25.61 -0.17 -1.51 16 24 C -0.12 -1.14 6.83 -25.08 -0.17 -1.31 16 25 C -0.11 -1.12 5.42 -24.73 -0.13 -1.25 16 26 C 0.08 1.26 5.78 -3.37 -0.02 1.24 16 27 C 0.13 2.44 6.69 -3.37 -0.02 2.42 16 28 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16 29 H 0.03 0.65 7.14 -51.93 -0.37 0.28 16 30 H 0.08 1.94 4.61 -51.93 -0.24 1.70 16 31 H 0.08 1.57 6.99 -51.93 -0.36 1.21 16 32 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.08 0.93 8.05 -51.93 -0.42 0.51 16 34 H 0.09 0.77 6.25 -51.93 -0.32 0.45 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.74 8.14 -51.92 -0.42 0.32 16 38 H 0.06 0.48 6.40 -51.93 -0.33 0.15 16 39 H 0.04 0.48 7.95 -51.93 -0.41 0.07 16 40 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.11 1.79 5.28 -51.93 -0.27 1.51 16 42 H 0.06 0.72 8.14 -51.92 -0.42 0.29 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.06 0.50 7.37 -51.93 -0.38 0.12 16 48 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 49 H 0.08 0.90 4.32 -51.93 -0.22 0.67 16 50 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 51 H 0.08 1.32 7.93 -51.93 -0.41 0.91 16 LS Contribution 367.99 15.07 5.55 5.55 Total: -1.00 -31.50 367.99 -10.05 -41.55 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -8.81 Total: 0.56 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: -1.61 Total: 2.86 kcal Atomic # 7 Polarization: -57.45 SS G_CDS: -1.11 Total: -58.56 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.07 Total: -10.09 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.14 Total: 18.14 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.50 -10.05 -41.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948755708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.719 kcal (2) G-P(sol) polarization free energy of solvation -31.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds