Wall clock time and date at job start Tue Mar 31 2020 13:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86805 * 119.99931 * 2 1 4 4 H 1.48496 * 109.47249 * 270.28062 * 3 2 1 5 5 H 1.48503 * 109.46827 * 30.27738 * 3 2 1 6 6 H 1.48501 * 109.47216 * 150.27543 * 3 2 1 7 7 C 1.38814 * 120.00322 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99453 * 342.73278 * 7 2 1 9 9 N 1.36932 * 120.00130 * 162.73907 * 7 2 1 10 10 C 1.46965 * 120.59297 * 328.46880 * 9 7 2 11 11 C 1.53365 * 108.63892 * 235.20796 * 10 9 7 12 12 N 1.46967 * 108.63751 * 310.57862 * 11 10 9 13 13 C 1.34779 * 120.59428 * 235.20366 * 12 11 10 14 14 O 1.21278 * 119.99871 * 359.97438 * 13 12 11 15 15 C 1.50699 * 119.99622 * 179.97438 * 13 12 11 16 16 H 1.08997 * 110.42499 * 302.31191 * 15 13 12 17 17 C 1.54908 * 110.37419 * 64.63117 * 15 13 12 18 18 C 1.55138 * 101.65647 * 155.89661 * 17 15 13 19 19 C 1.54323 * 103.01695 * 324.34591 * 18 17 15 20 20 N 1.47446 * 107.23546 * 22.28172 * 19 18 17 21 21 C 1.46897 * 110.99715 * 123.25899 * 20 19 18 22 22 C 1.54262 * 110.48421 * 169.60080 * 21 20 19 23 23 C 1.53876 * 106.59939 * 217.71045 * 22 21 20 24 24 C 1.54262 * 106.59493 * 0.02562 * 23 22 21 25 25 C 1.54881 * 104.19975 * 23.60650 * 24 23 22 26 26 C 1.46961 * 118.81068 * 55.47172 * 12 11 10 27 27 C 1.46961 * 120.59650 * 148.45233 * 9 7 2 28 28 H 0.96994 * 119.99841 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.61278 * 115.46298 * 10 9 7 30 30 H 1.09003 * 109.60957 * 354.95758 * 10 9 7 31 31 H 1.09003 * 109.61558 * 190.83084 * 11 10 9 32 32 H 1.09002 * 109.75378 * 70.40123 * 11 10 9 33 33 H 1.09005 * 110.99215 * 37.80123 * 17 15 13 34 34 H 1.09005 * 110.98703 * 273.99015 * 17 15 13 35 35 H 1.09000 * 110.70850 * 205.96329 * 18 17 15 36 36 H 1.08996 * 110.85361 * 82.79496 * 18 17 15 37 37 H 1.09007 * 109.88651 * 262.87859 * 19 18 17 38 38 H 1.08998 * 109.89161 * 141.69222 * 19 18 17 39 39 H 1.08997 * 110.53718 * 292.21000 * 21 20 19 40 40 H 1.09003 * 110.03391 * 98.42575 * 22 21 20 41 41 H 1.09006 * 110.03402 * 336.99462 * 22 21 20 42 42 H 1.09009 * 110.03216 * 119.28218 * 23 22 21 43 43 H 1.08995 * 110.03269 * 240.66505 * 23 22 21 44 44 H 1.09001 * 110.48750 * 142.28965 * 24 23 22 45 45 H 1.09001 * 110.48527 * 264.92682 * 24 23 22 46 46 H 1.09005 * 110.75437 * 80.37260 * 25 24 23 47 47 H 1.08999 * 110.76188 * 203.55748 * 25 24 23 48 48 H 1.08999 * 109.60776 * 64.27047 * 26 12 11 49 49 H 1.08999 * 109.60953 * 184.77956 * 26 12 11 50 50 H 1.09003 * 109.61349 * 244.53318 * 27 9 7 51 51 H 1.09005 * 109.61099 * 5.04843 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4918 2.0499 -1.4000 5 1 1.4505 2.6510 0.7059 6 1 3.5507 1.4386 0.6942 7 6 2.0103 -1.2021 -0.0005 8 1 1.5068 -2.1164 0.2767 9 7 3.3334 -1.2286 -0.3524 10 6 3.8650 -0.2748 -1.3360 11 6 4.5466 -1.0611 -2.4626 12 7 5.4605 -2.0437 -1.8633 13 6 6.7627 -2.0698 -2.2097 14 8 7.1897 -1.2780 -3.0231 15 6 7.6880 -3.0828 -1.5863 16 1 7.6862 -2.9824 -0.5010 17 6 7.2716 -4.5175 -1.9960 18 6 8.6055 -5.2914 -1.8267 19 6 9.6649 -4.2579 -2.2639 20 7 9.0590 -2.9219 -2.1158 21 6 9.8683 -2.0720 -1.2322 22 6 9.3756 -0.6112 -1.2886 23 6 10.6292 0.2784 -1.2198 24 6 11.8399 -0.6728 -1.1247 25 6 11.3299 -1.9995 -1.7401 26 6 4.9277 -3.0012 -0.8840 27 6 4.2473 -2.2112 0.2469 28 1 -0.4849 0.8400 0.0004 29 1 4.5921 0.3797 -0.8550 30 1 3.0492 0.3201 -1.7467 31 1 5.1100 -0.3771 -3.0973 32 1 3.7942 -1.5775 -3.0588 33 1 6.9330 -4.5451 -3.0317 34 1 6.5058 -4.9081 -1.3259 35 1 8.6290 -6.1660 -2.4768 36 1 8.7564 -5.5816 -0.7870 37 1 9.9402 -4.4269 -3.3050 38 1 10.5461 -4.3381 -1.6274 39 1 9.8374 -2.4457 -0.2088 40 1 8.7237 -0.4040 -0.4399 41 1 8.8419 -0.4329 -2.2222 42 1 10.7040 0.8885 -2.1201 43 1 10.5853 0.9180 -0.3383 44 1 12.6782 -0.2822 -1.7015 45 1 12.1278 -0.8209 -0.0839 46 1 11.3592 -1.9567 -2.8289 47 1 11.9117 -2.8447 -1.3724 48 1 4.2000 -3.6526 -1.3678 49 1 5.7428 -3.5987 -0.4758 50 1 5.0016 -1.6947 0.8406 51 1 3.6839 -2.8953 0.8816 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948755708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:27 Heat of formation + Delta-G solvation = -14.168058 kcal Electronic energy + Delta-G solvation = -29443.964730 eV Core-core repulsion = 25764.100431 eV Total energy + Delta-G solvation = -3679.864299 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.67319 -39.96478 -38.42094 -37.69131 -35.67293 -33.54087 -32.65813 -32.19987 -30.73619 -29.43223 -28.59701 -27.63924 -25.46824 -25.00846 -23.50416 -22.52493 -22.04998 -20.91510 -20.76570 -19.96625 -18.86905 -18.05432 -17.72548 -17.20922 -16.75343 -16.55564 -16.06264 -15.96071 -15.76714 -15.53467 -15.16360 -14.71477 -14.66012 -14.40471 -14.31464 -14.06365 -13.99688 -13.83934 -13.58846 -13.43217 -12.90271 -12.74427 -12.53022 -12.39711 -12.23755 -12.05727 -12.02079 -11.99358 -11.91723 -11.77211 -11.74275 -11.66174 -11.63712 -11.50220 -11.32349 -10.86193 -10.54171 -9.82511 -9.23562 -8.82841 -8.20882 -5.58059 1.25728 1.36554 1.44252 1.68711 1.90952 2.36222 2.92787 3.04804 3.26248 3.41984 3.59654 3.67209 3.76153 3.90854 3.97980 4.05522 4.08216 4.14406 4.21642 4.26350 4.38384 4.38906 4.48645 4.51583 4.53440 4.60489 4.61523 4.68560 4.72244 4.74997 4.80532 4.82242 4.90141 4.93297 4.98752 5.01835 5.06621 5.09824 5.14458 5.19415 5.22973 5.32129 5.41594 5.46325 5.57131 5.84291 5.96235 6.10854 6.22901 6.54492 6.84911 7.29069 7.54538 7.97768 8.98638 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.017321 B = 0.003903 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.125324 B = 7172.299444 C = 8207.036595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.024 4.024 3 Si 0.939 3.061 4 H -0.276 1.276 5 H -0.308 1.308 6 H -0.270 1.270 7 C -0.247 4.247 8 H 0.063 0.937 9 N -0.618 5.618 10 C 0.115 3.885 11 C 0.109 3.891 12 N -0.606 5.606 13 C 0.517 3.483 14 O -0.561 6.561 15 C 0.060 3.940 16 H 0.086 0.914 17 C -0.120 4.120 18 C -0.131 4.131 19 C 0.042 3.958 20 N -0.522 5.522 21 C 0.080 3.920 22 C -0.134 4.134 23 C -0.121 4.121 24 C -0.116 4.116 25 C -0.108 4.108 26 C 0.096 3.904 27 C 0.127 3.873 28 H 0.263 0.737 29 H 0.023 0.977 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.104 0.896 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.052 0.948 40 H 0.035 0.965 41 H 0.072 0.928 42 H 0.055 0.945 43 H 0.063 0.937 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.065 0.935 47 H 0.084 0.916 48 H 0.075 0.925 49 H 0.118 0.882 50 H 0.032 0.968 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.724 -11.093 -1.537 27.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.220 4.220 3 Si 0.769 3.231 4 H -0.203 1.203 5 H -0.236 1.236 6 H -0.195 1.195 7 C -0.377 4.377 8 H 0.081 0.919 9 N -0.343 5.343 10 C -0.011 4.011 11 C -0.016 4.016 12 N -0.340 5.340 13 C 0.306 3.694 14 O -0.439 6.439 15 C -0.051 4.051 16 H 0.104 0.896 17 C -0.158 4.158 18 C -0.169 4.169 19 C -0.085 4.085 20 N -0.247 5.247 21 C -0.028 4.028 22 C -0.172 4.172 23 C -0.159 4.159 24 C -0.154 4.154 25 C -0.145 4.145 26 C -0.027 4.027 27 C 0.002 3.998 28 H 0.072 0.928 29 H 0.041 0.959 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.122 0.878 35 H 0.112 0.888 36 H 0.105 0.895 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.070 0.930 40 H 0.054 0.946 41 H 0.090 0.910 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.095 0.905 45 H 0.094 0.906 46 H 0.084 0.916 47 H 0.103 0.897 48 H 0.093 0.907 49 H 0.136 0.864 50 H 0.050 0.950 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 24.813 -10.348 -2.431 26.994 hybrid contribution -0.640 1.197 0.751 1.551 sum 24.173 -9.150 -1.681 25.901 Atomic orbital electron populations 1.69904 1.07148 1.27218 1.55549 1.25897 0.95716 1.00502 0.99878 0.86039 0.78360 0.81075 0.77646 1.20326 1.23636 1.19535 1.18880 0.84836 0.93334 1.40641 0.91932 1.44386 1.05988 1.38338 1.45558 1.21646 0.96373 0.92458 0.90589 1.21854 0.92258 0.92095 0.95374 1.48070 1.08181 1.34462 1.43269 1.20983 0.81820 0.84782 0.81841 1.90566 1.75609 1.42233 1.35507 1.22434 0.89630 0.94961 0.98108 0.89601 1.22857 0.99492 0.90746 1.02671 1.22786 0.92564 0.98323 1.03220 1.22914 0.97474 0.85972 1.02162 1.63120 1.00009 1.13595 1.47944 1.22691 0.93813 0.92566 0.93757 1.22399 0.98010 0.94976 1.01801 1.22075 0.94504 0.98003 1.01359 1.22300 0.97040 0.94562 1.01529 1.22527 0.93012 0.98200 1.00797 1.22609 0.99480 0.90952 0.89705 1.21648 0.92389 0.91684 0.94122 0.92829 0.95863 0.92016 0.90076 0.91397 0.91485 0.87766 0.88827 0.89504 0.90730 0.90700 0.93012 0.94608 0.90953 0.92630 0.91866 0.90493 0.90563 0.91598 0.89749 0.90659 0.86435 0.95037 0.89817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.83 13.97 21.65 0.30 -58.52 16 2 C -0.02 -1.40 5.27 84.86 0.45 -0.95 16 3 Si 0.94 46.97 24.36 68.60 1.67 48.64 16 4 H -0.28 -13.26 6.57 99.48 0.65 -12.60 16 5 H -0.31 -15.58 7.11 99.48 0.71 -14.87 16 6 H -0.27 -13.28 6.73 99.48 0.67 -12.61 16 7 C -0.25 -13.51 10.02 84.03 0.84 -12.67 16 8 H 0.06 3.66 8.06 -2.91 -0.02 3.63 16 9 N -0.62 -28.10 2.69 -697.34 -1.88 -29.98 16 10 C 0.12 5.04 4.35 86.41 0.38 5.41 16 11 C 0.11 4.09 6.59 86.41 0.57 4.66 16 12 N -0.61 -19.62 2.94 -817.16 -2.40 -22.02 16 13 C 0.52 16.38 6.55 87.66 0.57 16.96 16 14 O -0.56 -21.80 13.20 -3.02 -0.04 -21.84 16 15 C 0.06 1.38 1.68 44.64 0.07 1.46 16 16 H 0.09 1.82 7.19 -2.39 -0.02 1.80 16 17 C -0.12 -2.02 5.66 31.98 0.18 -1.84 16 18 C -0.13 -1.57 6.94 31.78 0.22 -1.35 16 19 C 0.04 0.65 6.28 86.65 0.54 1.19 16 20 N -0.52 -11.76 4.25 -833.66 -3.54 -15.30 16 21 C 0.08 1.69 2.28 46.00 0.11 1.80 16 22 C -0.13 -3.57 5.47 31.32 0.17 -3.40 16 23 C -0.12 -2.60 6.80 31.32 0.21 -2.39 16 24 C -0.12 -1.86 6.83 31.66 0.22 -1.64 16 25 C -0.11 -1.81 5.42 31.89 0.17 -1.64 16 26 C 0.10 2.61 5.78 86.57 0.50 3.11 16 27 C 0.13 4.41 6.69 86.57 0.58 4.99 16 28 H 0.26 15.50 8.31 -92.71 -0.77 14.72 16 29 H 0.02 1.05 7.14 -2.39 -0.02 1.03 16 30 H 0.06 2.94 4.61 -2.39 -0.01 2.93 16 31 H 0.08 3.09 6.99 -2.39 -0.02 3.07 16 32 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.07 1.35 8.05 -2.38 -0.02 1.34 16 34 H 0.10 1.38 6.25 -2.38 -0.01 1.36 16 35 H 0.09 0.88 8.14 -2.39 -0.02 0.87 16 36 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 38 H 0.07 0.92 6.40 -2.39 -0.02 0.90 16 39 H 0.05 1.01 7.95 -2.39 -0.02 0.99 16 40 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.07 2.47 5.28 -2.38 -0.01 2.46 16 42 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 43 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 47 H 0.08 1.04 7.37 -2.39 -0.02 1.02 16 48 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 49 H 0.12 2.26 4.32 -2.39 -0.01 2.25 16 50 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 51 H 0.08 2.77 7.93 -2.38 -0.02 2.75 16 Total: -1.00 -70.62 367.99 0.71 -69.91 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: 0.81 Total: 15.41 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: 5.79 Total: 13.71 kcal Atomic # 7 Polarization: -118.31 SS G_CDS: -7.52 Total: -125.83 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -0.04 Total: -21.84 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 1.67 Total: 48.64 kcal Total: -70.62 0.71 -69.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948755708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.738 kcal (2) G-P(sol) polarization free energy of solvation -70.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds