Wall clock time and date at job start Tue Mar 31 2020 13:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 110.36807 * 2 1 4 4 C 1.54262 * 110.32291 * 122.17821 * 2 1 3 5 5 C 1.54379 * 105.05868 * 118.89835 * 4 2 1 6 6 N 1.48561 * 104.59736 * 336.14838 * 5 4 2 7 7 C 1.46893 * 111.00558 * 159.04022 * 6 5 4 8 8 C 1.50706 * 109.47176 * 69.87237 * 7 6 5 9 9 O 1.21279 * 119.99507 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00020 * 180.02562 * 8 7 6 11 11 C 1.47338 * 125.52390 * 359.69413 * 10 8 7 12 12 C 1.55167 * 104.79656 * 156.68580 * 11 10 8 13 13 C 1.54785 * 101.35255 * 37.54379 * 12 11 10 14 14 H 1.08999 * 113.40573 * 85.64222 * 13 12 11 15 15 C 1.53525 * 109.68534 * 212.75783 * 13 12 11 16 16 N 1.46644 * 107.05116 * 84.08811 * 15 13 12 17 17 C 1.36936 * 125.28807 * 197.36105 * 16 15 13 18 18 H 1.08000 * 120.00261 * 359.97438 * 17 16 15 19 19 C 1.38817 * 119.99937 * 180.02562 * 17 16 15 20 20 N 1.31615 * 120.00136 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00038 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46974 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47427 * 119.99478 * 21 19 17 24 24 H 1.48503 * 109.46959 * 239.99682 * 21 19 17 25 25 C 1.46495 * 109.42273 * 17.37767 * 16 15 13 26 26 C 1.47262 * 125.52150 * 180.02562 * 10 8 7 27 27 H 1.08992 * 111.94965 * 55.56493 * 26 10 8 28 28 C 1.48561 * 104.21970 * 39.47917 * 6 5 4 29 29 H 1.09001 * 109.47752 * 299.27325 * 1 2 3 30 30 H 1.09007 * 109.47113 * 59.27362 * 1 2 3 31 31 H 1.09002 * 109.47070 * 179.27128 * 1 2 3 32 32 H 1.09000 * 109.46799 * 180.72599 * 3 2 1 33 33 H 1.08993 * 109.47523 * 300.72556 * 3 2 1 34 34 H 1.09000 * 109.47148 * 60.72863 * 3 2 1 35 35 H 1.08999 * 110.32528 * 0.02562 * 4 2 1 36 36 H 1.08997 * 110.41421 * 237.83401 * 4 2 1 37 37 H 1.09001 * 110.41305 * 217.36986 * 5 4 2 38 38 H 1.08995 * 110.51151 * 94.97768 * 5 4 2 39 39 H 1.09001 * 109.46739 * 309.87645 * 7 6 5 40 40 H 1.09000 * 109.47767 * 189.87904 * 7 6 5 41 41 H 1.08997 * 110.35511 * 275.63400 * 11 10 8 42 42 H 1.08999 * 110.35713 * 37.92533 * 11 10 8 43 43 H 1.09000 * 111.21272 * 279.47287 * 12 11 10 44 44 H 1.08999 * 110.93113 * 155.49412 * 12 11 10 45 45 H 1.09003 * 109.91756 * 324.73813 * 15 13 12 46 46 H 1.09001 * 109.91514 * 203.43967 * 15 13 12 47 47 H 0.97002 * 120.00108 * 180.02562 * 20 19 17 48 48 H 1.09001 * 109.71432 * 238.31492 * 25 16 15 49 49 H 1.09003 * 109.71542 * 117.77136 * 25 16 15 50 50 H 1.09004 * 110.40559 * 79.29943 * 28 6 5 51 51 H 1.08997 * 110.41636 * 201.73472 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0624 1.4343 0.0000 4 6 2.0657 -0.7704 1.2244 5 6 2.8806 -1.9421 0.6359 6 7 2.3148 -2.1467 -0.7224 7 6 3.2649 -2.8594 -1.5867 8 6 3.3926 -4.2875 -1.1226 9 8 2.7545 -4.6736 -0.1662 10 7 4.2158 -5.1356 -1.7702 11 6 5.0396 -4.7995 -2.9447 12 6 6.1912 -5.8394 -2.9317 13 6 5.4482 -7.1108 -2.4548 14 1 4.9724 -7.6637 -3.2647 15 6 6.3966 -7.9804 -1.6173 16 7 6.3627 -7.4576 -0.2477 17 6 7.2937 -7.7186 0.7220 18 1 8.1372 -8.3566 0.5030 19 6 7.1527 -7.1641 1.9867 20 7 6.1246 -6.3870 2.2538 21 14 8.4223 -7.5207 3.3097 22 1 9.4720 -8.4159 2.7600 23 1 9.0418 -6.2475 3.7575 24 1 7.7623 -8.1827 4.4635 25 6 5.1778 -6.6130 -0.0779 26 6 4.4326 -6.5501 -1.4229 27 1 3.4988 -7.1116 -1.3992 28 6 2.0661 -0.7710 -1.2252 29 1 -0.3635 0.5025 0.8964 30 1 -0.3634 0.5251 -0.8835 31 1 -0.3633 -1.0276 -0.0131 32 1 3.1522 1.4173 -0.0130 33 1 1.6967 1.9577 -0.8833 34 1 1.7179 1.9499 0.8964 35 1 1.2387 -1.1489 1.8251 36 1 2.7077 -0.1278 1.8268 37 1 2.7489 -2.8388 1.2415 38 1 3.9364 -1.6790 0.5722 39 1 4.2386 -2.3723 -1.5354 40 1 2.9040 -2.8425 -2.6151 41 1 4.4526 -4.8918 -3.8584 42 1 5.4400 -3.7901 -2.8507 43 1 6.9718 -5.5547 -2.2263 44 1 6.6017 -5.9782 -3.9318 45 1 7.4094 -7.9145 -2.0150 46 1 6.0573 -9.0162 -1.6280 47 1 6.0263 -5.9992 3.1374 48 1 5.4812 -5.6099 0.2219 49 1 4.5264 -7.0421 0.6835 50 1 2.9941 -0.3227 -1.5803 51 1 1.3214 -0.7858 -2.0209 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076240049.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:59 Heat of formation + Delta-G solvation = 6.139073 kcal Electronic energy + Delta-G solvation = -28890.692095 eV Core-core repulsion = 25211.708379 eV Total energy + Delta-G solvation = -3678.983716 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.18956 -39.34817 -37.56698 -34.83893 -34.15626 -32.22081 -30.60841 -30.03468 -28.85998 -27.61072 -27.42371 -26.41841 -24.63498 -24.14596 -22.51179 -21.39520 -20.37122 -19.57858 -19.16020 -18.41059 -17.00175 -16.54378 -15.88018 -15.81917 -15.16194 -14.72963 -14.68504 -14.38953 -13.94152 -13.84139 -13.52900 -13.43416 -13.42073 -13.18000 -12.67868 -12.52775 -12.47107 -12.14351 -11.90344 -11.70606 -11.67569 -11.48068 -11.41074 -11.22883 -11.11724 -10.96016 -10.78065 -10.74756 -10.63563 -10.49722 -10.49084 -10.14990 -9.99747 -9.82129 -9.67659 -9.25298 -8.55231 -8.37560 -8.07984 -6.77028 -5.63845 -3.00479 3.14708 3.27331 3.42115 3.47101 3.50212 4.10876 4.43366 4.53126 4.57690 4.73954 4.79552 4.88022 5.09932 5.19811 5.27830 5.28582 5.30823 5.34742 5.36946 5.47467 5.50653 5.53238 5.56932 5.57806 5.62026 5.76147 5.76412 5.77204 5.84586 5.87007 5.96912 5.98642 6.07368 6.09383 6.18188 6.24178 6.28445 6.36513 6.42381 6.62293 6.63845 6.69067 6.88742 6.90688 6.98862 7.64451 7.68760 7.95559 8.07213 8.34056 8.74156 9.27562 9.88466 10.51567 11.45298 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.013793 B = 0.003703 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.456070 B = 7560.320999 C = 8987.611312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.070 4.070 3 C -0.138 4.138 4 C -0.115 4.115 5 C 0.034 3.966 6 N -0.490 5.490 7 C 0.032 3.968 8 C 0.527 3.473 9 O -0.511 6.511 10 N -0.611 5.611 11 C 0.102 3.898 12 C -0.120 4.120 13 C -0.111 4.111 14 H 0.087 0.913 15 C 0.145 3.855 16 N -0.603 5.603 17 C -0.233 4.233 18 H 0.078 0.922 19 C -0.006 4.006 20 N -0.913 5.913 21 Si 0.909 3.091 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.290 1.290 25 C 0.181 3.819 26 C 0.116 3.884 27 H 0.079 0.921 28 C 0.040 3.960 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.100 0.900 38 H 0.039 0.961 39 H 0.061 0.939 40 H 0.097 0.903 41 H 0.062 0.938 42 H 0.067 0.933 43 H 0.086 0.914 44 H 0.075 0.925 45 H 0.038 0.962 46 H 0.016 0.984 47 H 0.252 0.748 48 H 0.054 0.946 49 H 0.043 0.957 50 H 0.043 0.957 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.931 12.943 -12.058 18.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.070 4.070 3 C -0.196 4.196 4 C -0.154 4.154 5 C -0.094 4.094 6 N -0.214 5.214 7 C -0.100 4.100 8 C 0.314 3.686 9 O -0.385 6.385 10 N -0.347 5.347 11 C -0.021 4.021 12 C -0.158 4.158 13 C -0.130 4.130 14 H 0.106 0.894 15 C 0.018 3.982 16 N -0.330 5.330 17 C -0.361 4.361 18 H 0.096 0.904 19 C -0.203 4.203 20 N -0.560 5.560 21 Si 0.740 3.260 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.217 1.217 25 C 0.055 3.945 26 C 0.012 3.988 27 H 0.097 0.903 28 C -0.088 4.088 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.118 0.882 38 H 0.058 0.942 39 H 0.079 0.921 40 H 0.115 0.885 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.104 0.896 44 H 0.094 0.906 45 H 0.056 0.944 46 H 0.034 0.966 47 H 0.062 0.938 48 H 0.072 0.928 49 H 0.061 0.939 50 H 0.061 0.939 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.795 12.521 -11.246 18.548 hybrid contribution 1.521 0.311 0.581 1.658 sum -6.274 12.833 -10.666 17.827 Atomic orbital electron populations 1.21824 0.93694 1.02429 1.01075 1.21280 0.96246 0.94621 0.94899 1.21891 1.00714 0.95227 1.01730 1.22469 0.99895 0.96207 0.96781 1.23211 0.95950 0.99665 0.90571 1.65167 1.40121 1.13969 1.02096 1.22109 0.96099 0.93221 0.98528 1.19902 0.79089 0.86543 0.83081 1.90722 1.44243 1.77310 1.26181 1.48591 1.43564 1.11565 1.31010 1.22310 0.92243 0.99200 0.88364 1.22770 0.97224 0.94131 1.01632 1.22943 0.96372 0.96489 0.97245 0.89438 1.21068 0.96174 0.94692 0.86253 1.44157 1.26000 1.56033 1.06786 1.19047 1.01819 1.25361 0.89904 0.90378 1.24841 0.98146 0.99711 0.97591 1.70025 1.29311 1.35758 1.20886 0.86086 0.80500 0.77343 0.82064 1.20522 1.21854 1.21731 1.21251 0.87089 0.96382 0.89736 1.22849 0.97815 0.80092 0.98010 0.90324 1.23266 0.99719 0.88533 0.97268 0.92883 0.93025 0.91669 0.92721 0.92675 0.92421 0.90815 0.91409 0.88215 0.94228 0.92128 0.88485 0.91936 0.91459 0.89576 0.90632 0.94407 0.96607 0.93785 0.92753 0.93868 0.93911 0.90171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.26 8.23 37.15 0.31 -0.95 16 2 C -0.07 -0.71 1.03 -153.13 -0.16 -0.87 16 3 C -0.14 -1.16 8.25 37.16 0.31 -0.85 16 4 C -0.12 -1.40 6.29 -25.35 -0.16 -1.56 16 5 C 0.03 0.51 5.80 -2.18 -0.01 0.50 16 6 N -0.49 -7.05 5.06 -231.41 -1.17 -8.22 16 7 C 0.03 0.45 4.30 -4.98 -0.02 0.43 16 8 C 0.53 9.80 7.37 -10.98 -0.08 9.72 16 9 O -0.51 -11.72 14.93 5.56 0.08 -11.64 16 10 N -0.61 -10.77 2.83 -161.66 -0.46 -11.22 16 11 C 0.10 1.35 6.67 -2.44 -0.02 1.33 16 12 C -0.12 -1.71 6.34 -24.64 -0.16 -1.87 16 13 C -0.11 -1.84 3.97 -88.21 -0.35 -2.19 16 14 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 15 C 0.14 2.93 6.50 -3.69 -0.02 2.91 16 16 N -0.60 -15.57 3.37 -172.25 -0.58 -16.15 16 17 C -0.23 -6.57 10.25 -15.06 -0.15 -6.73 16 18 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 19 C -0.01 -0.17 5.48 -17.43 -0.10 -0.27 16 20 N -0.91 -27.91 10.23 55.49 0.57 -27.35 16 21 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 24 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 25 C 0.18 4.63 4.63 -3.58 -0.02 4.62 16 26 C 0.12 2.31 3.81 -65.85 -0.25 2.06 16 27 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 28 C 0.04 0.44 5.58 -2.18 -0.01 0.43 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.42 8.14 -51.92 -0.42 0.00 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.47 8.12 -51.93 -0.42 0.05 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.91 7.71 -51.93 -0.40 0.51 16 36 H 0.07 0.75 7.71 -51.93 -0.40 0.35 16 37 H 0.10 1.88 6.91 -51.93 -0.36 1.52 16 38 H 0.04 0.61 7.82 -51.93 -0.41 0.20 16 39 H 0.06 0.80 7.59 -51.93 -0.39 0.40 16 40 H 0.10 1.12 8.13 -51.93 -0.42 0.69 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.79 7.49 -51.93 -0.39 0.40 16 43 H 0.09 1.50 7.93 -51.93 -0.41 1.08 16 44 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.04 0.73 7.95 -51.93 -0.41 0.32 16 46 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 47 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 48 H 0.05 1.58 6.89 -51.93 -0.36 1.22 16 49 H 0.04 1.29 7.51 -51.93 -0.39 0.90 16 50 H 0.04 0.44 7.70 -51.93 -0.40 0.04 16 51 H 0.08 0.81 7.86 -51.93 -0.41 0.40 16 LS Contribution 386.68 15.07 5.83 5.83 Total: -1.00 -33.68 386.68 -11.00 -44.67 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -9.35 Total: -0.15 kcal Atomic # 6 Polarization: 7.60 SS G_CDS: -0.90 Total: 6.71 kcal Atomic # 7 Polarization: -61.29 SS G_CDS: -1.64 Total: -62.94 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.08 Total: -11.64 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.68 -11.00 -44.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076240049.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.814 kcal (2) G-P(sol) polarization free energy of solvation -33.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds