Wall clock time and date at job start Tue Mar 31 2020 13:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52997 * 109.47127 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47294 * 179.97438 * 4 3 2 6 6 C 1.34948 * 126.03777 * 124.99918 * 5 4 3 7 7 C 1.35325 * 107.74538 * 179.97438 * 6 5 4 8 8 C 1.50697 * 126.04020 * 179.97438 * 7 6 5 9 9 N 1.46504 * 109.47051 * 260.02314 * 8 7 6 10 10 C 1.34779 * 119.99930 * 179.97438 * 9 8 7 11 11 O 1.21275 * 119.99826 * 359.97438 * 10 9 8 12 12 C 1.50696 * 119.99916 * 179.97438 * 10 9 8 13 13 C 1.52997 * 109.47043 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47051 * 180.02562 * 13 12 10 15 15 C 1.53003 * 109.47034 * 179.97438 * 14 13 12 16 16 C 1.50705 * 109.46879 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00183 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99879 * 180.02562 * 16 15 14 19 19 N 1.31518 * 119.99680 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00085 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47361 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47438 * 120.00244 * 20 18 16 23 23 H 1.48501 * 109.47124 * 240.00057 * 20 18 16 24 24 C 1.39875 * 107.91725 * 359.97438 * 7 6 5 25 25 C 1.50699 * 125.89439 * 179.97438 * 24 7 6 26 26 N 1.30838 * 108.20344 * 359.74614 * 24 7 6 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46952 * 300.00302 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 30 30 H 1.09001 * 109.47502 * 240.00157 * 2 1 3 31 31 H 1.09001 * 109.47289 * 119.99953 * 2 1 3 32 32 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 33 33 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 34 34 H 1.09001 * 109.47289 * 299.99953 * 4 3 2 35 35 H 1.09004 * 109.47261 * 59.99697 * 4 3 2 36 36 H 1.07997 * 126.13184 * 359.97438 * 6 5 4 37 37 H 1.09004 * 109.46964 * 20.02097 * 8 7 6 38 38 H 1.08996 * 109.47221 * 140.02006 * 8 7 6 39 39 H 0.97002 * 119.99948 * 359.97438 * 9 8 7 40 40 H 1.09001 * 109.47042 * 300.00365 * 12 10 9 41 41 H 1.09007 * 109.46903 * 60.00229 * 12 10 9 42 42 H 1.09004 * 109.46951 * 299.99942 * 13 12 10 43 43 H 1.08996 * 109.47228 * 59.99848 * 13 12 10 44 44 H 1.08993 * 109.47252 * 300.00230 * 14 13 12 45 45 H 1.09007 * 109.46935 * 60.00142 * 14 13 12 46 46 H 1.08995 * 109.47053 * 300.00257 * 15 14 13 47 47 H 1.08994 * 109.46635 * 60.00667 * 15 14 13 48 48 H 0.97001 * 119.99562 * 180.02562 * 19 18 16 49 49 H 1.08999 * 109.47472 * 90.00330 * 25 24 7 50 50 H 1.09007 * 109.46909 * 210.00328 * 25 24 7 51 51 H 1.09005 * 109.47120 * 330.00164 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0583 2.8237 -0.0013 6 6 4.9135 3.3638 0.8921 7 6 5.1124 4.6562 0.5434 8 6 5.9957 5.6427 1.2627 9 7 5.1727 6.5032 2.1162 10 6 5.7517 7.4668 2.8597 11 8 6.9540 7.6212 2.8225 12 6 4.9051 8.3523 3.7373 13 6 5.8019 9.3538 4.4676 14 6 4.9424 10.2525 5.3591 15 6 5.8393 11.2536 6.0900 16 6 4.9926 12.1391 6.9675 17 1 3.9220 12.0014 7.0009 18 6 5.5849 13.1252 7.7277 19 7 6.8886 13.2933 7.6866 20 14 4.5355 14.2224 8.8160 21 1 3.1090 13.8313 8.6845 22 1 4.9617 14.0699 10.2304 23 1 4.7018 15.6379 8.3989 24 6 4.3532 4.9144 -0.6027 25 6 4.2761 6.2300 -1.3336 26 7 3.7255 3.8151 -0.9334 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 3.9337 0.9286 0.8891 35 1 3.9330 0.9288 -0.8909 36 1 5.3592 2.8559 1.7345 37 1 6.7167 5.1039 1.8775 38 1 6.5260 6.2548 0.5332 39 1 4.2111 6.3795 2.1462 40 1 4.1847 8.8915 3.1221 41 1 4.3741 7.7403 4.4665 42 1 6.5226 8.8149 5.0828 43 1 6.3325 9.9657 3.7382 44 1 4.2215 10.7913 4.7444 45 1 4.4121 9.6402 6.0886 46 1 6.5600 10.7144 6.7047 47 1 6.3698 11.8658 5.3607 48 1 7.3053 13.9868 8.2217 49 1 5.0514 6.2665 -2.0989 50 1 3.2972 6.3281 -1.8030 51 1 4.4239 7.0472 -0.6274 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588163197.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:28 Heat of formation + Delta-G solvation = -8.345440 kcal Electronic energy + Delta-G solvation = -25557.545556 eV Core-core repulsion = 21877.933744 eV Total energy + Delta-G solvation = -3679.611811 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.72642 -39.47425 -36.72016 -35.20246 -34.66642 -33.56440 -32.58093 -31.26079 -30.45710 -29.51917 -27.87356 -26.38803 -25.03155 -23.57480 -22.17690 -21.81210 -21.16134 -20.17838 -19.92933 -19.72712 -17.32485 -16.58659 -16.28780 -16.18023 -15.91559 -15.69144 -15.28761 -14.78617 -14.41593 -14.38316 -14.20133 -13.96224 -13.57158 -13.45440 -13.15705 -13.04983 -12.86909 -12.65874 -12.55187 -12.37665 -11.99006 -11.96487 -11.82875 -11.64168 -11.62246 -11.53611 -11.24984 -10.96032 -10.79302 -10.47743 -10.45215 -10.35565 -9.82815 -9.57940 -9.56175 -9.20404 -9.05032 -8.95097 -8.74052 -8.27357 -5.92088 -3.94314 1.46184 2.04484 2.23410 2.83935 3.35344 3.42425 3.46251 3.48488 3.87279 4.19927 4.34507 4.38631 4.46593 4.51871 4.59038 4.72753 4.80191 4.88298 4.95717 5.03354 5.13173 5.15830 5.18934 5.32250 5.34615 5.41168 5.42976 5.45997 5.54194 5.56718 5.58634 5.63073 5.69974 5.74311 5.81353 5.95619 6.20804 6.30938 6.37393 6.43400 6.59776 6.61918 6.90467 7.08630 7.25462 7.35260 7.57712 7.78488 7.94866 8.09988 8.37947 8.51895 9.13734 9.69200 11.19261 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.018560 B = 0.001628 C = 0.001553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.243915 B =17193.113485 C =18025.563745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.132 4.132 4 C 0.134 3.866 5 N -0.372 5.372 6 C 0.077 3.923 7 C -0.257 4.257 8 C 0.201 3.799 9 N -0.734 5.734 10 C 0.511 3.489 11 O -0.538 6.538 12 C -0.139 4.139 13 C -0.103 4.103 14 C -0.110 4.110 15 C 0.019 3.981 16 C -0.519 4.519 17 H 0.055 0.945 18 C 0.055 3.945 19 N -0.895 5.895 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.284 1.284 24 C 0.090 3.910 25 C -0.077 4.077 26 N -0.294 5.294 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.175 0.825 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.399 0.601 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.046 0.954 45 H 0.046 0.954 46 H 0.016 0.984 47 H 0.016 0.984 48 H 0.259 0.741 49 H 0.078 0.922 50 H 0.073 0.927 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.819 -29.174 -19.548 36.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.170 4.170 4 C 0.013 3.987 5 N -0.152 5.152 6 C -0.071 4.071 7 C -0.269 4.269 8 C 0.077 3.923 9 N -0.388 5.388 10 C 0.298 3.702 11 O -0.414 6.414 12 C -0.179 4.179 13 C -0.141 4.141 14 C -0.148 4.148 15 C -0.018 4.018 16 C -0.558 4.558 17 H 0.073 0.927 18 C -0.146 4.146 19 N -0.535 5.535 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.077 4.077 25 C -0.136 4.136 26 N -0.116 5.116 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.114 0.886 35 H 0.102 0.898 36 H 0.192 0.808 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.233 0.767 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.034 0.966 47 H 0.034 0.966 48 H 0.069 0.931 49 H 0.096 0.904 50 H 0.092 0.908 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.641 -29.677 -20.331 37.243 hybrid contribution -0.402 0.730 1.274 1.522 sum -10.043 -28.947 -19.057 36.083 Atomic orbital electron populations 1.21750 0.95203 1.01896 1.02168 1.21464 0.96627 0.95593 1.02317 1.21906 0.93216 0.97931 1.03954 1.21799 0.95828 0.77209 1.03846 1.48576 1.35442 1.10240 1.20950 1.22442 0.94449 0.94472 0.95689 1.19978 1.09874 0.95256 1.01783 1.19333 0.91008 0.89774 0.92230 1.46264 1.11042 1.35360 1.46104 1.21081 0.89054 0.80224 0.79815 1.90703 1.15279 1.69931 1.65468 1.21788 0.99405 0.98007 0.98675 1.21442 0.97654 0.96299 0.98696 1.21652 0.98463 0.97390 0.97312 1.19107 0.94698 0.93114 0.94899 1.21337 0.93734 1.15803 1.24888 0.92713 1.25042 0.94900 0.97541 0.97105 1.69991 1.09097 1.33284 1.41082 0.86563 0.80612 0.80537 0.80425 1.19804 1.21088 1.21067 1.22308 0.95142 0.95218 0.95043 1.20233 1.03192 0.90349 0.99779 1.77325 1.24261 0.96616 1.13442 0.92453 0.92573 0.92528 0.91626 0.91703 0.90321 0.91280 0.88587 0.89764 0.80802 0.91262 0.90925 0.76744 0.89233 0.89313 0.91859 0.91802 0.93499 0.93544 0.96584 0.96558 0.93140 0.90352 0.90806 0.90098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.60 9.91 37.16 0.37 -0.23 16 2 C -0.12 -0.42 5.93 -26.73 -0.16 -0.58 16 3 C -0.13 -0.65 5.41 -26.73 -0.14 -0.79 16 4 C 0.13 0.64 6.51 -4.05 -0.03 0.61 16 5 N -0.37 -2.94 3.68 -61.37 -0.23 -3.16 16 6 C 0.08 0.58 11.36 -17.22 -0.20 0.38 16 7 C -0.26 -2.27 5.47 -105.05 -0.57 -2.84 16 8 C 0.20 1.97 5.78 -5.19 -0.03 1.94 16 9 N -0.73 -7.58 5.55 -61.47 -0.34 -7.92 16 10 C 0.51 7.15 7.83 -10.99 -0.09 7.06 16 11 O -0.54 -9.84 15.98 5.56 0.09 -9.76 16 12 C -0.14 -1.87 5.70 -27.89 -0.16 -2.03 16 13 C -0.10 -1.87 4.50 -26.73 -0.12 -1.99 16 14 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 15 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 16 C -0.52 -15.12 9.11 -34.44 -0.31 -15.44 16 17 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 18 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.89 -27.70 13.29 55.43 0.74 -26.97 16 20 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 21 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 24 C 0.09 0.85 7.22 -82.40 -0.59 0.26 16 25 C -0.08 -0.58 10.26 36.01 0.37 -0.22 16 26 N -0.29 -3.00 12.42 33.67 0.42 -2.58 16 27 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.10 0.24 8.07 -51.93 -0.42 -0.18 16 35 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.17 0.81 8.06 -52.49 -0.42 0.39 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.40 3.32 8.46 -40.82 -0.35 2.98 16 40 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 43 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 44 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 49 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 51 H 0.08 0.60 7.96 -51.93 -0.41 0.19 16 LS Contribution 423.70 15.07 6.39 6.39 Total: -1.00 -35.69 423.70 -9.59 -45.28 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -9.59 Total: -3.88 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: -2.04 Total: -14.43 kcal Atomic # 7 Polarization: -41.22 SS G_CDS: 0.59 Total: -40.63 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.09 Total: -9.76 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 6.39 Total: 6.39 kcal Total: -35.69 -9.59 -45.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588163197.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.931 kcal (2) G-P(sol) polarization free energy of solvation -35.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds