Wall clock time and date at job start Tue Mar 31 2020 13:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52997 * 109.47127 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47294 * 179.97438 * 4 3 2 6 6 C 1.34948 * 126.03777 * 124.99918 * 5 4 3 7 7 C 1.35325 * 107.74538 * 179.97438 * 6 5 4 8 8 C 1.50697 * 126.04020 * 179.97438 * 7 6 5 9 9 N 1.46504 * 109.47051 * 260.02314 * 8 7 6 10 10 C 1.34779 * 119.99930 * 179.97438 * 9 8 7 11 11 O 1.21275 * 119.99826 * 359.97438 * 10 9 8 12 12 C 1.50696 * 119.99916 * 179.97438 * 10 9 8 13 13 C 1.52997 * 109.47043 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47051 * 180.02562 * 13 12 10 15 15 C 1.53003 * 109.47034 * 179.97438 * 14 13 12 16 16 C 1.50705 * 109.46879 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00183 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99879 * 180.02562 * 16 15 14 19 19 N 1.31518 * 119.99680 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00085 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47361 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47438 * 120.00244 * 20 18 16 23 23 H 1.48501 * 109.47124 * 240.00057 * 20 18 16 24 24 C 1.39875 * 107.91725 * 359.97438 * 7 6 5 25 25 C 1.50699 * 125.89439 * 179.97438 * 24 7 6 26 26 N 1.30838 * 108.20344 * 359.74614 * 24 7 6 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46952 * 300.00302 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 30 30 H 1.09001 * 109.47502 * 240.00157 * 2 1 3 31 31 H 1.09001 * 109.47289 * 119.99953 * 2 1 3 32 32 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 33 33 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 34 34 H 1.09001 * 109.47289 * 299.99953 * 4 3 2 35 35 H 1.09004 * 109.47261 * 59.99697 * 4 3 2 36 36 H 1.07997 * 126.13184 * 359.97438 * 6 5 4 37 37 H 1.09004 * 109.46964 * 20.02097 * 8 7 6 38 38 H 1.08996 * 109.47221 * 140.02006 * 8 7 6 39 39 H 0.97002 * 119.99948 * 359.97438 * 9 8 7 40 40 H 1.09001 * 109.47042 * 300.00365 * 12 10 9 41 41 H 1.09007 * 109.46903 * 60.00229 * 12 10 9 42 42 H 1.09004 * 109.46951 * 299.99942 * 13 12 10 43 43 H 1.08996 * 109.47228 * 59.99848 * 13 12 10 44 44 H 1.08993 * 109.47252 * 300.00230 * 14 13 12 45 45 H 1.09007 * 109.46935 * 60.00142 * 14 13 12 46 46 H 1.08995 * 109.47053 * 300.00257 * 15 14 13 47 47 H 1.08994 * 109.46635 * 60.00667 * 15 14 13 48 48 H 0.97001 * 119.99562 * 180.02562 * 19 18 16 49 49 H 1.08999 * 109.47472 * 90.00330 * 25 24 7 50 50 H 1.09007 * 109.46909 * 210.00328 * 25 24 7 51 51 H 1.09005 * 109.47120 * 330.00164 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0583 2.8237 -0.0013 6 6 4.9135 3.3638 0.8921 7 6 5.1124 4.6562 0.5434 8 6 5.9957 5.6427 1.2627 9 7 5.1727 6.5032 2.1162 10 6 5.7517 7.4668 2.8597 11 8 6.9540 7.6212 2.8225 12 6 4.9051 8.3523 3.7373 13 6 5.8019 9.3538 4.4676 14 6 4.9424 10.2525 5.3591 15 6 5.8393 11.2536 6.0900 16 6 4.9926 12.1391 6.9675 17 1 3.9220 12.0014 7.0009 18 6 5.5849 13.1252 7.7277 19 7 6.8886 13.2933 7.6866 20 14 4.5355 14.2224 8.8160 21 1 3.1090 13.8313 8.6845 22 1 4.9617 14.0699 10.2304 23 1 4.7018 15.6379 8.3989 24 6 4.3532 4.9144 -0.6027 25 6 4.2761 6.2300 -1.3336 26 7 3.7255 3.8151 -0.9334 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 3.9337 0.9286 0.8891 35 1 3.9330 0.9288 -0.8909 36 1 5.3592 2.8559 1.7345 37 1 6.7167 5.1039 1.8775 38 1 6.5260 6.2548 0.5332 39 1 4.2111 6.3795 2.1462 40 1 4.1847 8.8915 3.1221 41 1 4.3741 7.7403 4.4665 42 1 6.5226 8.8149 5.0828 43 1 6.3325 9.9657 3.7382 44 1 4.2215 10.7913 4.7444 45 1 4.4121 9.6402 6.0886 46 1 6.5600 10.7144 6.7047 47 1 6.3698 11.8658 5.3607 48 1 7.3053 13.9868 8.2217 49 1 5.0514 6.2665 -2.0989 50 1 3.2972 6.3281 -1.8030 51 1 4.4239 7.0472 -0.6274 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588163197.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:28 Heat of formation + Delta-G solvation = -29.988713 kcal Electronic energy + Delta-G solvation = -25558.484078 eV Core-core repulsion = 21877.933744 eV Total energy + Delta-G solvation = -3680.550334 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.34830 -40.58984 -37.18184 -36.64675 -35.82223 -34.57482 -34.13071 -32.14013 -31.33480 -30.73421 -28.53573 -27.65699 -26.29870 -24.24518 -23.71750 -22.14968 -21.78845 -21.74846 -21.16371 -20.40329 -18.40521 -18.09574 -17.41820 -16.91637 -16.81181 -16.68790 -16.45358 -15.87896 -15.75983 -15.17592 -14.80662 -14.73430 -14.51919 -14.45669 -14.20780 -13.84254 -13.70055 -13.57721 -13.54080 -13.34070 -13.23187 -13.17088 -12.94124 -12.81127 -12.36346 -12.29397 -12.19951 -12.10899 -12.09127 -11.97535 -11.60879 -11.40362 -11.34049 -11.32655 -11.12743 -10.79654 -10.53691 -10.21047 -10.00742 -9.43152 -8.16966 -6.28943 0.86596 1.41584 1.42484 1.52192 1.55689 1.56001 1.74656 2.42968 2.56166 3.15771 3.40709 3.83012 3.86917 3.91623 3.93912 4.07985 4.12434 4.18469 4.20991 4.26501 4.37672 4.42466 4.44933 4.60221 4.68291 4.73091 4.76472 4.77228 4.83465 4.88760 4.89903 4.93372 4.98426 5.02933 5.09095 5.10977 5.22020 5.24263 5.30215 5.36775 5.40687 5.41112 5.53080 5.61073 5.67526 5.81401 5.90724 6.08515 6.27752 6.65711 6.72528 6.89741 7.36112 7.40608 8.95411 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.018560 B = 0.001628 C = 0.001553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.243915 B =17193.113485 C =18025.563745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.117 4.117 3 C -0.124 4.124 4 C 0.127 3.873 5 N -0.371 5.371 6 C 0.087 3.913 7 C -0.271 4.271 8 C 0.207 3.793 9 N -0.713 5.713 10 C 0.512 3.488 11 O -0.589 6.589 12 C -0.129 4.129 13 C -0.095 4.095 14 C -0.096 4.096 15 C 0.018 3.982 16 C -0.541 4.541 17 H 0.066 0.934 18 C -0.006 4.006 19 N -0.937 5.937 20 Si 0.969 3.031 21 H -0.258 1.258 22 H -0.279 1.279 23 H -0.279 1.279 24 C 0.080 3.920 25 C -0.075 4.075 26 N -0.326 5.326 27 H 0.063 0.937 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.126 0.874 35 H 0.090 0.910 36 H 0.205 0.795 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.412 0.588 40 H 0.116 0.884 41 H 0.116 0.884 42 H 0.043 0.957 43 H 0.043 0.957 44 H 0.060 0.940 45 H 0.060 0.940 46 H -0.015 1.015 47 H -0.015 1.015 48 H 0.262 0.738 49 H 0.082 0.918 50 H 0.076 0.924 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.965 -30.693 -19.154 38.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.155 4.155 3 C -0.162 4.162 4 C 0.008 3.992 5 N -0.151 5.151 6 C -0.062 4.062 7 C -0.283 4.283 8 C 0.083 3.917 9 N -0.366 5.366 10 C 0.300 3.700 11 O -0.469 6.469 12 C -0.168 4.168 13 C -0.134 4.134 14 C -0.134 4.134 15 C -0.020 4.020 16 C -0.579 4.579 17 H 0.084 0.916 18 C -0.203 4.203 19 N -0.578 5.578 20 Si 0.794 3.206 21 H -0.182 1.182 22 H -0.205 1.205 23 H -0.205 1.205 24 C -0.087 4.087 25 C -0.134 4.134 26 N -0.149 5.149 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.144 0.856 35 H 0.108 0.892 36 H 0.222 0.778 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.248 0.752 40 H 0.134 0.866 41 H 0.134 0.866 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.004 0.996 47 H 0.004 0.996 48 H 0.071 0.929 49 H 0.101 0.899 50 H 0.095 0.905 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.848 -31.238 -19.969 38.923 hybrid contribution 0.283 1.127 1.112 1.608 sum -11.565 -30.112 -18.857 37.364 Atomic orbital electron populations 1.21773 0.95725 1.02166 1.01614 1.21439 0.96127 0.94670 1.03254 1.21797 0.93471 0.98544 1.02376 1.22103 0.95566 0.75948 1.05614 1.48842 1.35101 1.10825 1.20345 1.22906 0.93384 0.94075 0.95818 1.19875 1.10586 0.95773 1.02066 1.19248 0.91047 0.89642 0.91799 1.46092 1.11764 1.34008 1.44696 1.21112 0.88281 0.80635 0.79933 1.90695 1.17384 1.71509 1.67322 1.21666 0.98620 0.97335 0.99221 1.21238 0.97634 0.96610 0.97878 1.21455 0.97751 0.96557 0.97619 1.19071 0.94889 0.93828 0.94173 1.21799 0.94476 1.16355 1.25313 0.91625 1.26080 0.96254 0.99271 0.98733 1.70143 1.11254 1.34195 1.42177 0.85336 0.79194 0.78090 0.78022 1.18163 1.20473 1.20482 1.22570 0.95116 0.95593 0.95378 1.20252 1.03535 0.89797 0.99825 1.77282 1.25348 0.97407 1.14864 0.91764 0.92974 0.93281 0.91033 0.90347 0.92529 0.92191 0.85610 0.89194 0.77798 0.91382 0.92040 0.75164 0.86594 0.86591 0.93817 0.93823 0.92159 0.92154 0.99631 0.99649 0.92888 0.89931 0.90500 0.90054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.06 9.91 71.98 0.71 -0.35 16 2 C -0.12 -0.61 5.93 30.60 0.18 -0.42 16 3 C -0.12 -1.06 5.41 30.60 0.17 -0.89 16 4 C 0.13 0.93 6.51 86.38 0.56 1.49 16 5 N -0.37 -5.21 3.68 -348.06 -1.28 -6.49 16 6 C 0.09 1.09 11.36 83.54 0.95 2.04 16 7 C -0.27 -4.40 5.47 -20.14 -0.11 -4.51 16 8 C 0.21 3.85 5.78 85.63 0.50 4.35 16 9 N -0.71 -13.51 5.55 -466.79 -2.59 -16.10 16 10 C 0.51 13.78 7.83 87.66 0.69 14.47 16 11 O -0.59 -21.82 15.98 -3.02 -0.05 -21.87 16 12 C -0.13 -3.21 5.70 29.85 0.17 -3.04 16 13 C -0.10 -3.48 4.50 30.59 0.14 -3.34 16 14 C -0.10 -3.98 5.15 30.59 0.16 -3.82 16 15 C 0.02 0.97 4.97 29.85 0.15 1.12 16 16 C -0.54 -31.68 9.11 25.60 0.23 -31.45 16 17 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 18 C -0.01 -0.37 5.46 84.65 0.46 0.09 16 19 N -0.94 -59.26 13.29 21.45 0.28 -58.97 16 20 Si 0.97 45.09 29.54 68.60 2.03 47.11 16 21 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 22 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 23 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 24 C 0.08 1.45 7.22 43.10 0.31 1.76 16 25 C -0.08 -1.11 10.26 71.24 0.73 -0.38 16 26 N -0.33 -6.39 12.42 -47.38 -0.59 -6.98 16 27 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.08 0.22 8.14 -2.39 -0.02 0.20 16 32 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.13 0.18 8.07 -2.39 -0.02 0.16 16 35 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 36 H 0.21 1.18 8.06 -2.91 -0.02 1.16 16 37 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 38 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.41 5.80 8.46 -92.71 -0.78 5.02 16 40 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 41 H 0.12 2.31 8.14 -2.38 -0.02 2.29 16 42 H 0.04 1.74 8.10 -2.38 -0.02 1.72 16 43 H 0.04 1.74 8.10 -2.39 -0.02 1.72 16 44 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 45 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 46 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 47 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 48 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 49 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 50 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 51 H 0.08 1.16 7.96 -2.38 -0.02 1.14 16 Total: -1.00 -79.74 423.70 3.89 -75.85 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: 0.09 Total: 10.32 kcal Atomic # 6 Polarization: -28.87 SS G_CDS: 5.99 Total: -22.88 kcal Atomic # 7 Polarization: -84.36 SS G_CDS: -4.17 Total: -88.54 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -0.05 Total: -21.87 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Total: -79.74 3.89 -75.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588163197.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.863 kcal (2) G-P(sol) polarization free energy of solvation -79.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds