Wall clock time and date at job start Tue Mar 31 2020 13:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47155 * 2 1 4 4 C 1.53001 * 109.47498 * 120.00349 * 2 1 3 5 5 N 1.46896 * 109.47171 * 174.99869 * 4 2 1 6 6 C 1.48562 * 111.00279 * 290.12603 * 5 4 2 7 7 C 1.54377 * 104.59675 * 200.95911 * 6 5 4 8 8 C 1.54259 * 105.05886 * 23.85208 * 7 6 5 9 9 H 1.09002 * 110.32649 * 240.99830 * 8 7 6 10 10 C 1.50698 * 110.32535 * 118.89632 * 8 7 6 11 11 O 1.21282 * 120.00486 * 241.45589 * 10 8 7 12 12 N 1.34778 * 120.00199 * 61.45165 * 10 8 7 13 13 C 1.47874 * 126.94183 * 0.02728 * 12 10 8 14 14 C 1.56014 * 105.19097 * 182.03954 * 13 12 10 15 15 H 1.09004 * 116.25037 * 159.63370 * 14 13 12 16 16 C 1.57082 * 99.60807 * 32.75371 * 14 13 12 17 17 C 1.49509 * 127.06284 * 179.97438 * 12 10 8 18 18 H 1.09002 * 116.74795 * 16.29647 * 17 12 10 19 19 C 1.56022 * 104.14370 * 246.67737 * 17 12 10 20 20 N 1.47877 * 105.10059 * 288.75973 * 19 17 12 21 21 C 1.36931 * 126.94144 * 181.98451 * 20 19 17 22 22 H 1.08006 * 120.00127 * 180.02562 * 21 20 19 23 23 C 1.38809 * 120.00370 * 0.02562 * 21 20 19 24 24 N 1.31623 * 120.00075 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00095 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47212 * 60.00824 * 25 23 21 27 27 H 1.48497 * 109.46725 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.47378 * 300.00483 * 25 23 21 29 29 C 1.48558 * 111.00047 * 174.70708 * 5 4 2 30 30 H 1.09001 * 109.47349 * 299.99463 * 1 2 3 31 31 H 1.08998 * 109.47384 * 59.99703 * 1 2 3 32 32 H 1.09000 * 109.46781 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47349 * 240.00537 * 2 1 3 34 34 H 1.09002 * 109.47554 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.47216 * 300.00399 * 3 2 1 36 36 H 1.09001 * 109.46553 * 60.00049 * 3 2 1 37 37 H 1.08998 * 109.46993 * 54.99841 * 4 2 1 38 38 H 1.09002 * 109.46879 * 294.99914 * 4 2 1 39 39 H 1.09007 * 110.40857 * 82.18242 * 6 5 4 40 40 H 1.08995 * 110.40781 * 319.73925 * 6 5 4 41 41 H 1.08997 * 110.32593 * 264.95752 * 7 6 5 42 42 H 1.08996 * 110.32655 * 142.74579 * 7 6 5 43 43 H 1.09002 * 110.31604 * 63.08127 * 13 12 10 44 44 H 1.09004 * 110.31557 * 300.99664 * 13 12 10 45 45 H 1.09007 * 112.36824 * 64.27640 * 16 14 13 46 46 H 1.09001 * 112.36928 * 191.70963 * 16 14 13 47 47 H 1.08999 * 110.31620 * 169.85894 * 19 17 12 48 48 H 1.08999 * 110.39941 * 47.70657 * 19 17 12 49 49 H 0.96995 * 120.00002 * 179.97438 * 24 23 21 50 50 H 1.08995 * 110.41130 * 40.25983 * 29 5 4 51 51 H 1.08997 * 110.41290 * 277.81873 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5041 -0.8267 1.1903 6 6 3.9271 -1.7807 0.1329 7 6 5.3602 -2.1933 0.5319 8 6 5.4390 -1.9482 2.0529 9 1 6.2099 -1.2113 2.2782 10 6 5.7226 -3.2390 2.7771 11 8 4.9231 -3.6726 3.5794 12 7 6.8648 -3.9117 2.5332 13 6 7.9396 -3.5266 1.5935 14 6 8.9853 -4.6817 1.6730 15 1 9.6708 -4.7704 0.8301 16 6 8.0200 -5.8911 1.9432 17 6 7.3041 -5.1973 3.1573 18 1 6.5389 -5.7809 3.6692 19 6 8.5529 -4.8024 4.0051 20 7 9.6135 -4.5115 3.0164 21 6 10.9096 -4.1573 3.2801 22 1 11.5942 -3.9689 2.4663 23 6 11.3437 -4.0402 4.5934 24 7 10.5096 -4.2701 5.5853 25 14 13.1118 -3.5562 4.9530 26 1 13.3895 -2.2219 4.3632 27 1 13.3209 -3.5016 6.4222 28 1 14.0305 -4.5607 4.3597 29 6 4.0469 -1.4082 2.4449 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5137 -0.8900 34 1 3.1300 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 1.6055 -1.7198 1.2950 38 1 1.7517 -0.1584 2.1369 39 1 3.9296 -1.2918 -0.8413 40 1 3.2704 -2.6506 0.1211 41 1 6.0911 -1.5753 0.0105 42 1 5.5267 -3.2472 0.3092 43 1 8.3924 -2.5843 1.9020 44 1 7.5449 -3.4425 0.5809 45 1 7.3410 -6.0741 1.1104 46 1 8.5571 -6.7926 2.2383 47 1 8.8515 -5.6307 4.6476 48 1 8.3408 -3.9168 4.6041 49 1 10.8131 -4.1887 6.5029 50 1 3.4090 -2.2198 2.7948 51 1 4.1397 -0.6389 3.2114 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032442770.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:18 Heat of formation + Delta-G solvation = 19.178589 kcal Electronic energy + Delta-G solvation = -28485.255046 eV Core-core repulsion = 24806.836766 eV Total energy + Delta-G solvation = -3678.418280 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.41501 -39.16253 -37.59333 -35.63481 -33.66999 -32.02453 -30.92187 -29.17265 -28.87227 -28.51378 -27.29649 -25.67669 -25.21573 -23.72971 -21.93711 -21.67478 -20.23669 -19.95979 -19.56554 -18.41134 -17.21388 -16.49049 -16.20074 -15.97641 -15.48805 -15.12567 -14.65169 -14.26438 -14.12245 -13.90326 -13.69541 -13.58590 -13.26040 -12.94019 -12.56670 -12.46520 -12.27285 -12.11790 -11.92536 -11.75889 -11.66822 -11.39816 -11.34628 -11.28183 -11.12838 -10.98207 -10.95819 -10.86187 -10.79468 -10.75699 -10.61971 -10.60168 -10.27678 -10.10764 -9.64728 -9.36640 -8.71525 -8.57028 -8.00874 -6.94431 -5.78143 -3.12920 3.02945 3.31528 3.36604 3.40779 3.42888 3.91517 4.40507 4.44950 4.52967 4.71723 4.77364 4.83195 4.97133 5.04472 5.17397 5.20233 5.28055 5.33187 5.37909 5.43670 5.45021 5.47220 5.54819 5.55414 5.61630 5.65073 5.69027 5.73237 5.75655 5.77191 5.89767 5.92929 5.93732 5.98973 6.06454 6.12720 6.18335 6.22308 6.27367 6.38828 6.48271 6.57926 6.66744 6.73072 6.91734 7.40449 7.47195 7.70183 8.07514 8.11360 8.58123 9.08557 9.69566 10.38581 11.33826 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.023733 B = 0.002751 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.503672 B =10177.276515 C =10432.868415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 C -0.138 4.138 4 C 0.049 3.951 5 N -0.509 5.509 6 C 0.033 3.967 7 C -0.112 4.112 8 C -0.108 4.108 9 H 0.104 0.896 10 C 0.534 3.466 11 O -0.558 6.558 12 N -0.603 5.603 13 C 0.083 3.917 14 C 0.140 3.860 15 H 0.106 0.894 16 C -0.151 4.151 17 C 0.097 3.903 18 H 0.112 0.888 19 C 0.175 3.825 20 N -0.597 5.597 21 C -0.233 4.233 22 H 0.080 0.920 23 C -0.006 4.006 24 N -0.920 5.920 25 Si 0.913 3.087 26 H -0.285 1.285 27 H -0.290 1.290 28 H -0.285 1.285 29 C 0.048 3.952 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.045 0.955 36 H 0.049 0.951 37 H 0.036 0.964 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.043 0.957 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.056 0.944 45 H 0.064 0.936 46 H 0.083 0.917 47 H 0.055 0.945 48 H 0.047 0.953 49 H 0.255 0.745 50 H 0.065 0.935 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.132 5.478 -13.245 20.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.110 4.110 3 C -0.196 4.196 4 C -0.080 4.080 5 N -0.232 5.232 6 C -0.095 4.095 7 C -0.150 4.150 8 C -0.130 4.130 9 H 0.122 0.878 10 C 0.322 3.678 11 O -0.437 6.437 12 N -0.336 5.336 13 C -0.042 4.042 14 C 0.031 3.969 15 H 0.124 0.876 16 C -0.191 4.191 17 C -0.005 4.005 18 H 0.130 0.870 19 C 0.050 3.950 20 N -0.321 5.321 21 C -0.361 4.361 22 H 0.098 0.902 23 C -0.203 4.203 24 N -0.566 5.566 25 Si 0.743 3.257 26 H -0.211 1.211 27 H -0.216 1.216 28 H -0.211 1.211 29 C -0.080 4.080 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.054 0.946 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.061 0.939 41 H 0.099 0.901 42 H 0.092 0.908 43 H 0.089 0.911 44 H 0.074 0.926 45 H 0.083 0.917 46 H 0.102 0.898 47 H 0.073 0.927 48 H 0.065 0.935 49 H 0.065 0.935 50 H 0.083 0.917 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -15.252 5.906 -12.645 20.674 hybrid contribution 0.659 -0.431 0.532 0.950 sum -14.593 5.475 -12.113 19.740 Atomic orbital electron populations 1.21830 0.95307 1.01578 1.01831 1.21085 0.94984 0.97199 0.97769 1.21724 1.02292 0.94830 1.00710 1.22346 0.87763 0.99139 0.98736 1.65392 1.10094 1.43971 1.03792 1.23128 0.95539 0.94343 0.96452 1.22315 0.97109 1.01942 0.93657 1.21937 0.99422 0.95755 0.95853 0.87777 1.19983 0.80214 0.85239 0.82388 1.90644 1.46998 1.69488 1.36579 1.49206 1.18049 1.24035 1.42287 1.23358 0.88725 1.01029 0.91122 1.23185 0.91572 0.91086 0.91040 0.87617 1.24149 0.98649 0.98897 0.97362 1.24357 0.96469 0.84052 0.95648 0.86992 1.21915 0.83385 0.99925 0.89819 1.45234 1.07682 1.80425 0.98799 1.18996 0.84889 1.40167 0.92014 0.90201 1.24825 0.98153 1.01718 0.95556 1.69906 1.33679 1.54600 0.98407 0.86191 0.84060 0.78348 0.77069 1.21143 1.21632 1.21109 1.22973 0.93870 0.98700 0.92414 0.92636 0.92575 0.92910 0.91350 0.91376 0.93586 0.93149 0.94617 0.90711 0.90002 0.93876 0.90111 0.90794 0.91121 0.92606 0.91746 0.89811 0.92681 0.93494 0.93516 0.91713 0.89798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.19 37.16 0.34 -0.72 16 2 C -0.09 -0.77 2.92 -90.62 -0.26 -1.03 16 3 C -0.14 -1.16 9.08 37.16 0.34 -0.82 16 4 C 0.05 0.48 4.20 -3.83 -0.02 0.47 16 5 N -0.51 -5.76 4.83 -229.98 -1.11 -6.87 16 6 C 0.03 0.35 5.74 -2.18 -0.01 0.34 16 7 C -0.11 -1.28 5.20 -25.35 -0.13 -1.41 16 8 C -0.11 -1.52 3.00 -90.39 -0.27 -1.79 16 9 H 0.10 1.48 8.14 -51.93 -0.42 1.05 16 10 C 0.53 9.59 7.06 -10.99 -0.08 9.51 16 11 O -0.56 -11.77 15.83 5.56 0.09 -11.68 16 12 N -0.60 -10.87 2.90 -156.60 -0.45 -11.33 16 13 C 0.08 1.37 5.54 -1.68 -0.01 1.36 16 14 C 0.14 2.53 5.53 -62.56 -0.35 2.19 16 15 H 0.11 1.71 8.14 -51.93 -0.42 1.28 16 16 C -0.15 -2.51 6.81 -22.30 -0.15 -2.66 16 17 C 0.10 1.87 5.24 -62.42 -0.33 1.54 16 18 H 0.11 2.12 8.09 -51.93 -0.42 1.70 16 19 C 0.17 4.17 4.77 -1.67 -0.01 4.16 16 20 N -0.60 -14.17 3.02 -156.34 -0.47 -14.64 16 21 C -0.23 -6.13 10.37 -15.06 -0.16 -6.28 16 22 H 0.08 1.99 7.83 -52.48 -0.41 1.58 16 23 C -0.01 -0.15 5.49 -17.43 -0.10 -0.25 16 24 N -0.92 -26.71 10.56 55.49 0.59 -26.13 16 25 Si 0.91 21.60 29.55 -169.99 -5.02 16.57 16 26 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 28 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 29 C 0.05 0.65 5.81 -2.18 -0.01 0.64 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.58 7.05 -51.93 -0.37 0.22 16 34 H 0.07 0.65 7.75 -51.93 -0.40 0.25 16 35 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.04 0.37 7.88 -51.93 -0.41 -0.04 16 38 H 0.07 0.74 8.13 -51.93 -0.42 0.32 16 39 H 0.08 0.75 7.64 -51.93 -0.40 0.35 16 40 H 0.04 0.47 7.82 -51.93 -0.41 0.06 16 41 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.07 0.88 6.76 -51.93 -0.35 0.52 16 43 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 44 H 0.06 0.74 6.36 -51.93 -0.33 0.41 16 45 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16 46 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 47 H 0.06 1.45 7.46 -51.93 -0.39 1.07 16 48 H 0.05 1.30 7.67 -51.93 -0.40 0.90 16 49 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 50 H 0.06 0.98 6.79 -51.93 -0.35 0.63 16 51 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 387.20 15.07 5.84 5.84 Total: -1.00 -30.57 387.20 -11.01 -41.59 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -9.26 Total: 1.41 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: -1.20 Total: 5.24 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: -1.45 Total: -58.96 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.09 Total: -11.68 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.57 -11.01 -41.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032442770.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.767 kcal (2) G-P(sol) polarization free energy of solvation -30.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds