Wall clock time and date at job start Tue Mar 31 2020 13:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47155 * 2 1 4 4 C 1.53001 * 109.47498 * 120.00349 * 2 1 3 5 5 N 1.46896 * 109.47171 * 174.99869 * 4 2 1 6 6 C 1.48562 * 111.00279 * 290.12603 * 5 4 2 7 7 C 1.54377 * 104.59675 * 200.95911 * 6 5 4 8 8 C 1.54259 * 105.05886 * 23.85208 * 7 6 5 9 9 H 1.09002 * 110.32649 * 240.99830 * 8 7 6 10 10 C 1.50698 * 110.32535 * 118.89632 * 8 7 6 11 11 O 1.21282 * 120.00486 * 241.45589 * 10 8 7 12 12 N 1.34778 * 120.00199 * 61.45165 * 10 8 7 13 13 C 1.47874 * 126.94183 * 0.02728 * 12 10 8 14 14 C 1.56014 * 105.19097 * 182.03954 * 13 12 10 15 15 H 1.09004 * 116.25037 * 159.63370 * 14 13 12 16 16 C 1.57082 * 99.60807 * 32.75371 * 14 13 12 17 17 C 1.49509 * 127.06284 * 179.97438 * 12 10 8 18 18 H 1.09002 * 116.74795 * 16.29647 * 17 12 10 19 19 C 1.56022 * 104.14370 * 246.67737 * 17 12 10 20 20 N 1.47877 * 105.10059 * 288.75973 * 19 17 12 21 21 C 1.36931 * 126.94144 * 181.98451 * 20 19 17 22 22 H 1.08006 * 120.00127 * 180.02562 * 21 20 19 23 23 C 1.38809 * 120.00370 * 0.02562 * 21 20 19 24 24 N 1.31623 * 120.00075 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00095 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47212 * 60.00824 * 25 23 21 27 27 H 1.48497 * 109.46725 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.47378 * 300.00483 * 25 23 21 29 29 C 1.48558 * 111.00047 * 174.70708 * 5 4 2 30 30 H 1.09001 * 109.47349 * 299.99463 * 1 2 3 31 31 H 1.08998 * 109.47384 * 59.99703 * 1 2 3 32 32 H 1.09000 * 109.46781 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47349 * 240.00537 * 2 1 3 34 34 H 1.09002 * 109.47554 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.47216 * 300.00399 * 3 2 1 36 36 H 1.09001 * 109.46553 * 60.00049 * 3 2 1 37 37 H 1.08998 * 109.46993 * 54.99841 * 4 2 1 38 38 H 1.09002 * 109.46879 * 294.99914 * 4 2 1 39 39 H 1.09007 * 110.40857 * 82.18242 * 6 5 4 40 40 H 1.08995 * 110.40781 * 319.73925 * 6 5 4 41 41 H 1.08997 * 110.32593 * 264.95752 * 7 6 5 42 42 H 1.08996 * 110.32655 * 142.74579 * 7 6 5 43 43 H 1.09002 * 110.31604 * 63.08127 * 13 12 10 44 44 H 1.09004 * 110.31557 * 300.99664 * 13 12 10 45 45 H 1.09007 * 112.36824 * 64.27640 * 16 14 13 46 46 H 1.09001 * 112.36928 * 191.70963 * 16 14 13 47 47 H 1.08999 * 110.31620 * 169.85894 * 19 17 12 48 48 H 1.08999 * 110.39941 * 47.70657 * 19 17 12 49 49 H 0.96995 * 120.00002 * 179.97438 * 24 23 21 50 50 H 1.08995 * 110.41130 * 40.25983 * 29 5 4 51 51 H 1.08997 * 110.41290 * 277.81873 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5041 -0.8267 1.1903 6 6 3.9271 -1.7807 0.1329 7 6 5.3602 -2.1933 0.5319 8 6 5.4390 -1.9482 2.0529 9 1 6.2099 -1.2113 2.2782 10 6 5.7226 -3.2390 2.7771 11 8 4.9231 -3.6726 3.5794 12 7 6.8648 -3.9117 2.5332 13 6 7.9396 -3.5266 1.5935 14 6 8.9853 -4.6817 1.6730 15 1 9.6708 -4.7704 0.8301 16 6 8.0200 -5.8911 1.9432 17 6 7.3041 -5.1973 3.1573 18 1 6.5389 -5.7809 3.6692 19 6 8.5529 -4.8024 4.0051 20 7 9.6135 -4.5115 3.0164 21 6 10.9096 -4.1573 3.2801 22 1 11.5942 -3.9689 2.4663 23 6 11.3437 -4.0402 4.5934 24 7 10.5096 -4.2701 5.5853 25 14 13.1118 -3.5562 4.9530 26 1 13.3895 -2.2219 4.3632 27 1 13.3209 -3.5016 6.4222 28 1 14.0305 -4.5607 4.3597 29 6 4.0469 -1.4082 2.4449 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5137 -0.8900 34 1 3.1300 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 1.6055 -1.7198 1.2950 38 1 1.7517 -0.1584 2.1369 39 1 3.9296 -1.2918 -0.8413 40 1 3.2704 -2.6506 0.1211 41 1 6.0911 -1.5753 0.0105 42 1 5.5267 -3.2472 0.3092 43 1 8.3924 -2.5843 1.9020 44 1 7.5449 -3.4425 0.5809 45 1 7.3410 -6.0741 1.1104 46 1 8.5571 -6.7926 2.2383 47 1 8.8515 -5.6307 4.6476 48 1 8.3408 -3.9168 4.6041 49 1 10.8131 -4.1887 6.5029 50 1 3.4090 -2.2198 2.7948 51 1 4.1397 -0.6389 3.2114 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032442770.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:17 Heat of formation + Delta-G solvation = 0.632503 kcal Electronic energy + Delta-G solvation = -28486.059264 eV Core-core repulsion = 24806.836766 eV Total energy + Delta-G solvation = -3679.222499 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.81268 -40.37049 -38.90771 -36.47754 -35.47184 -33.53414 -32.19014 -30.61457 -30.25682 -29.94467 -27.90532 -26.97981 -26.58968 -25.31950 -23.29505 -22.55071 -21.56759 -21.31604 -20.62714 -19.92658 -18.78245 -17.96478 -17.43501 -17.23134 -16.91056 -16.20730 -16.03683 -15.64937 -15.45278 -15.15280 -14.74182 -14.63175 -14.54707 -14.13565 -13.83444 -13.56763 -13.43818 -13.37117 -13.15470 -13.05424 -12.87330 -12.79371 -12.67922 -12.55429 -12.42340 -12.30097 -12.25944 -12.14012 -12.08674 -11.88983 -11.83903 -11.75201 -11.58557 -11.51669 -11.36741 -10.88390 -10.65220 -9.54930 -9.48532 -8.90772 -7.84350 -5.20145 1.46761 1.49590 1.55613 1.60404 1.94260 2.48782 2.96145 3.33264 3.37992 3.46096 3.58103 3.69298 3.81097 3.90741 3.97941 4.02333 4.08030 4.18955 4.22021 4.30553 4.32874 4.47524 4.59093 4.59956 4.66727 4.68187 4.73678 4.79300 4.81272 4.85737 4.88303 4.93754 4.97214 5.02157 5.05962 5.08755 5.11932 5.14862 5.17569 5.25550 5.29630 5.44930 5.47230 5.52849 5.55667 5.65022 5.80632 6.03901 6.09937 6.66901 7.02748 7.13869 7.71313 8.41753 9.26630 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.023733 B = 0.002751 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.503672 B =10177.276515 C =10432.868415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 C -0.135 4.135 4 C 0.048 3.952 5 N -0.506 5.506 6 C 0.035 3.965 7 C -0.105 4.105 8 C -0.103 4.103 9 H 0.105 0.895 10 C 0.527 3.473 11 O -0.596 6.596 12 N -0.605 5.605 13 C 0.092 3.908 14 C 0.134 3.866 15 H 0.137 0.863 16 C -0.128 4.128 17 C 0.098 3.902 18 H 0.110 0.890 19 C 0.188 3.812 20 N -0.617 5.617 21 C -0.229 4.229 22 H 0.097 0.903 23 C -0.073 4.073 24 N -0.959 5.959 25 Si 0.978 3.022 26 H -0.276 1.276 27 H -0.305 1.305 28 H -0.273 1.273 29 C 0.052 3.948 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.046 0.954 37 H 0.030 0.970 38 H 0.070 0.930 39 H 0.104 0.896 40 H 0.040 0.960 41 H 0.101 0.899 42 H 0.076 0.924 43 H 0.052 0.948 44 H 0.105 0.895 45 H 0.104 0.896 46 H 0.079 0.921 47 H 0.016 0.984 48 H -0.006 1.006 49 H 0.243 0.757 50 H 0.043 0.957 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.389 6.092 -17.244 23.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.105 4.105 3 C -0.192 4.192 4 C -0.080 4.080 5 N -0.230 5.230 6 C -0.092 4.092 7 C -0.143 4.143 8 C -0.124 4.124 9 H 0.123 0.877 10 C 0.317 3.683 11 O -0.478 6.478 12 N -0.337 5.337 13 C -0.032 4.032 14 C 0.028 3.972 15 H 0.155 0.845 16 C -0.167 4.167 17 C -0.005 4.005 18 H 0.128 0.872 19 C 0.062 3.938 20 N -0.341 5.341 21 C -0.358 4.358 22 H 0.115 0.885 23 C -0.266 4.266 24 N -0.608 5.608 25 Si 0.806 3.194 26 H -0.202 1.202 27 H -0.231 1.231 28 H -0.199 1.199 29 C -0.076 4.076 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.048 0.952 38 H 0.089 0.911 39 H 0.122 0.878 40 H 0.058 0.942 41 H 0.120 0.880 42 H 0.095 0.905 43 H 0.070 0.930 44 H 0.123 0.877 45 H 0.122 0.878 46 H 0.098 0.902 47 H 0.034 0.966 48 H 0.013 0.987 49 H 0.052 0.948 50 H 0.061 0.939 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -15.509 6.527 -16.727 23.726 hybrid contribution 0.688 -0.619 1.765 1.993 sum -14.821 5.908 -14.961 21.872 Atomic orbital electron populations 1.21811 0.94330 1.01818 1.02364 1.21057 0.95750 0.96921 0.96779 1.21688 1.01499 0.94884 1.01158 1.22403 0.86927 0.99040 0.99676 1.65437 1.10931 1.43781 1.02847 1.23189 0.94828 0.94259 0.96955 1.22349 0.98287 1.02575 0.91121 1.21928 0.99564 0.93263 0.97677 0.87737 1.20717 0.79597 0.86023 0.81917 1.90624 1.48315 1.70625 1.38250 1.49285 1.18465 1.23620 1.42356 1.23280 0.87839 0.99173 0.92912 1.23633 0.92180 0.92226 0.89157 0.84539 1.24046 0.98128 0.97745 0.96756 1.24174 0.94652 0.85383 0.96283 0.87165 1.21498 0.85963 0.96206 0.90132 1.45495 1.07076 1.80222 1.01338 1.19512 0.86259 1.37776 0.92268 0.88539 1.25680 1.01940 1.03141 0.95803 1.70161 1.35411 1.57076 0.98139 0.85157 0.79858 0.78467 0.75886 1.20198 1.23141 1.19887 1.22853 0.93402 0.97859 0.93529 0.92661 0.91509 0.92846 0.90961 0.92489 0.92435 0.93443 0.95197 0.91130 0.87798 0.94210 0.88007 0.90525 0.93004 0.87730 0.87783 0.90220 0.96585 0.98742 0.94790 0.93921 0.90246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.19 71.98 0.66 -1.13 16 2 C -0.09 -1.26 2.92 -10.79 -0.03 -1.29 16 3 C -0.13 -1.98 9.08 71.98 0.65 -1.33 16 4 C 0.05 0.90 4.20 86.30 0.36 1.26 16 5 N -0.51 -10.66 4.83 -881.51 -4.25 -14.91 16 6 C 0.04 0.64 5.74 86.45 0.50 1.14 16 7 C -0.11 -2.05 5.20 31.49 0.16 -1.88 16 8 C -0.10 -2.77 3.00 -10.65 -0.03 -2.80 16 9 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 10 C 0.53 18.86 7.06 87.66 0.62 19.48 16 11 O -0.60 -25.84 15.83 -3.04 -0.05 -25.89 16 12 N -0.61 -21.27 2.90 -767.77 -2.23 -23.50 16 13 C 0.09 2.77 5.54 87.16 0.48 3.25 16 14 C 0.13 4.47 5.53 46.93 0.26 4.73 16 15 H 0.14 3.76 8.14 -2.39 -0.02 3.74 16 16 C -0.13 -3.89 6.81 33.47 0.23 -3.67 16 17 C 0.10 3.79 5.24 46.89 0.25 4.04 16 18 H 0.11 4.27 8.09 -2.39 -0.02 4.25 16 19 C 0.19 9.41 4.77 87.16 0.42 9.83 16 20 N -0.62 -29.27 3.02 -648.54 -1.96 -31.23 16 21 C -0.23 -12.05 10.37 84.03 0.87 -11.18 16 22 H 0.10 4.64 7.83 -2.91 -0.02 4.62 16 23 C -0.07 -4.11 5.49 84.86 0.47 -3.64 16 24 N -0.96 -58.70 10.56 21.65 0.23 -58.48 16 25 Si 0.98 45.18 29.55 68.60 2.03 47.21 16 26 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 27 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 28 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 29 C 0.05 1.38 5.81 86.45 0.50 1.88 16 30 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.07 1.02 7.05 -2.39 -0.02 1.00 16 34 H 0.06 0.97 7.75 -2.39 -0.02 0.95 16 35 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.03 0.60 7.88 -2.39 -0.02 0.58 16 38 H 0.07 1.37 8.13 -2.39 -0.02 1.35 16 39 H 0.10 1.48 7.64 -2.38 -0.02 1.46 16 40 H 0.04 0.76 7.82 -2.39 -0.02 0.74 16 41 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.08 1.49 6.76 -2.39 -0.02 1.47 16 43 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.10 2.21 6.36 -2.39 -0.02 2.19 16 45 H 0.10 2.45 8.14 -2.38 -0.02 2.43 16 46 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 47 H 0.02 0.91 7.46 -2.39 -0.02 0.89 16 48 H -0.01 -0.34 7.67 -2.39 -0.02 -0.35 16 49 H 0.24 14.74 8.31 -92.71 -0.77 13.97 16 50 H 0.04 1.33 6.79 -2.39 -0.02 1.31 16 51 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -71.00 387.20 1.01 -69.99 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: 0.88 Total: 18.12 kcal Atomic # 6 Polarization: 12.33 SS G_CDS: 6.36 Total: 18.69 kcal Atomic # 7 Polarization: -119.90 SS G_CDS: -8.21 Total: -128.11 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: -0.05 Total: -25.89 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -71.00 1.01 -69.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032442770.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.623 kcal (2) G-P(sol) polarization free energy of solvation -71.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds