Wall clock time and date at job start Tue Mar 31 2020 14:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86801 * 119.99798 * 2 1 4 4 H 1.48499 * 109.47277 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47303 * 300.00206 * 3 2 1 6 6 H 1.48498 * 109.47087 * 60.00168 * 3 2 1 7 7 C 1.38798 * 120.00264 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00147 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99912 * 359.97438 * 7 2 1 10 10 C 1.80995 * 99.99939 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47099 * 179.97438 * 10 9 7 12 12 O 1.21273 * 120.00078 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99847 * 180.27765 * 11 10 9 14 14 C 1.39153 * 119.99845 * 174.62965 * 13 11 10 15 15 C 1.40128 * 119.21886 * 185.10737 * 14 13 11 16 16 C 1.36284 * 119.88344 * 179.69533 * 15 14 13 17 17 C 1.40946 * 118.27523 * 0.58267 * 16 15 14 18 18 C 1.40372 * 121.25006 * 179.66162 * 17 16 15 19 19 C 1.36164 * 119.65665 * 180.02562 * 18 17 16 20 20 C 1.39426 * 120.83656 * 359.97438 * 19 18 17 21 21 Cl 1.73603 * 119.49537 * 179.97438 * 20 19 18 22 22 C 1.36239 * 121.01009 * 359.97438 * 20 19 18 23 23 C 1.40526 * 119.75410 * 0.04696 * 22 20 19 24 24 N 1.31656 * 119.21701 * 5.38114 * 14 13 11 25 25 H 0.97001 * 120.00720 * 359.97438 * 1 2 3 26 26 H 1.09008 * 109.46864 * 60.00444 * 10 9 7 27 27 H 1.09000 * 109.47752 * 300.00058 * 10 9 7 28 28 H 0.96993 * 119.99955 * 354.62523 * 13 11 10 29 29 H 1.08003 * 120.05606 * 359.97438 * 15 14 13 30 30 H 1.08002 * 120.86362 * 180.26965 * 16 15 14 31 31 H 1.07998 * 120.17389 * 0.02562 * 18 17 16 32 32 H 1.07999 * 119.58017 * 179.97438 * 19 18 17 33 33 H 1.07999 * 120.12495 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8913 -0.0021 11 6 1.9875 -5.3027 -0.0017 12 8 0.7913 -5.5023 -0.0009 13 7 2.8443 -6.3430 0.0029 14 6 2.3601 -7.6427 0.1161 15 6 3.2684 -8.7038 0.2278 16 6 2.8090 -9.9814 0.3456 17 6 1.4155 -10.1932 0.3383 18 6 0.8745 -11.4837 0.4486 19 6 -0.4768 -11.6510 0.4375 20 6 -1.3316 -10.5559 0.3183 21 17 -3.0490 -10.8093 0.3073 22 6 -0.8396 -9.2900 0.2104 23 6 0.5497 -9.0787 0.2177 24 7 1.0594 -7.8466 0.1102 25 1 -0.4851 0.8400 0.0004 26 1 3.1252 -3.7316 0.8876 27 1 3.1239 -3.7309 -0.8925 28 1 3.7984 -6.1858 -0.0727 29 1 4.3308 -8.5090 0.2250 30 1 3.4948 -10.8107 0.4370 31 1 1.5265 -12.3395 0.5419 32 1 -0.8918 -12.6445 0.5220 33 1 -1.5148 -8.4521 0.1183 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337166325.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:35 Heat of formation + Delta-G solvation = 26.089466 kcal Electronic energy + Delta-G solvation = -20557.326243 eV Core-core repulsion = 17121.618637 eV Total energy + Delta-G solvation = -3435.707606 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 322.028 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.21057 -39.46320 -37.55728 -36.35188 -34.25819 -33.65874 -32.45905 -30.43372 -30.24680 -28.71298 -25.54803 -24.50098 -23.62066 -22.48501 -20.58688 -19.16885 -17.86816 -17.42625 -17.35504 -16.25900 -15.62375 -15.48980 -14.91165 -14.83183 -14.62090 -14.44514 -14.19299 -13.79252 -13.53704 -13.32628 -13.17944 -12.62367 -12.22594 -12.19824 -11.99790 -11.47360 -11.17950 -11.09043 -11.05591 -10.79842 -10.68508 -10.12859 -10.03618 -9.85289 -9.10227 -8.97749 -8.60894 -8.28428 -8.16540 -6.54430 -6.24613 -3.95998 0.16479 0.53333 1.76284 1.86481 2.47637 2.70588 3.11291 3.20009 3.22283 3.29004 3.48973 3.95138 4.12643 4.17180 4.38201 4.51594 4.55554 4.72526 4.79327 4.98329 5.07464 5.10783 5.37966 5.53176 5.55871 5.57602 5.68697 5.78309 5.93188 6.02522 6.03591 6.08587 6.32479 6.63123 7.15476 7.56950 7.96542 8.32185 8.46937 9.20717 10.82797 Molecular weight = 322.03amu Principal moments of inertia in cm(-1) A = 0.020712 B = 0.002590 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.565577 B =10806.867144 C =12136.425621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.073 3.927 3 Si 0.920 3.080 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.074 0.926 9 S -0.056 6.056 10 C -0.153 4.153 11 C 0.517 3.483 12 O -0.440 6.440 13 N -0.663 5.663 14 C 0.398 3.602 15 C -0.193 4.193 16 C -0.032 4.032 17 C -0.138 4.138 18 C -0.071 4.071 19 C -0.128 4.128 20 C -0.012 4.012 21 Cl -0.066 7.066 22 C -0.084 4.084 23 C 0.175 3.825 24 N -0.469 5.469 25 H 0.268 0.732 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.417 0.583 29 H 0.142 0.858 30 H 0.145 0.855 31 H 0.137 0.863 32 H 0.135 0.865 33 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.775 -25.030 0.816 25.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.684 4.684 8 H 0.092 0.908 9 S 0.171 5.829 10 C -0.303 4.303 11 C 0.301 3.699 12 O -0.305 6.305 13 N -0.311 5.311 14 C 0.152 3.848 15 C -0.215 4.215 16 C -0.058 4.058 17 C -0.141 4.141 18 C -0.090 4.090 19 C -0.147 4.147 20 C -0.040 4.040 21 Cl -0.037 7.037 22 C -0.104 4.104 23 C 0.051 3.949 24 N -0.186 5.186 25 H 0.078 0.922 26 H 0.112 0.888 27 H 0.111 0.889 28 H 0.254 0.746 29 H 0.160 0.840 30 H 0.162 0.838 31 H 0.155 0.845 32 H 0.153 0.847 33 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 3.789 -24.464 0.746 24.767 hybrid contribution 2.924 0.724 0.038 3.013 sum 6.713 -23.739 0.784 24.683 Atomic orbital electron populations 1.70022 1.05958 1.27442 1.46723 1.25002 0.95039 0.99080 0.94486 0.86102 0.79545 0.81823 0.77929 1.19611 1.20547 1.20545 1.22890 0.94941 0.91508 1.59097 0.90786 1.85483 1.04377 0.96330 1.96733 1.23562 1.07026 0.94490 1.05256 1.20674 0.86875 0.85961 0.76345 1.90824 1.14489 1.84395 1.40822 1.43934 1.11594 1.03217 1.72317 1.18724 0.89187 0.85416 0.91486 1.21361 1.00625 0.92567 1.06965 1.21227 0.93894 0.96872 0.93790 1.18864 0.94375 0.94730 1.06128 1.20842 0.94664 0.95669 0.97775 1.20684 0.92992 0.98164 1.02831 1.20544 0.85223 0.94529 1.03732 1.98385 1.11505 1.96987 1.96805 1.20713 0.93858 0.96301 0.99524 1.18488 0.93203 0.87442 0.95772 1.68146 1.11687 1.21648 1.17082 0.92166 0.88828 0.88863 0.74619 0.84044 0.83755 0.84541 0.84714 0.83284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.96 13.22 55.49 0.73 -25.23 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.18 29.55 -169.99 -5.02 16.16 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.54 -15.02 9.50 30.94 0.29 -14.72 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.49 20.57 -107.50 -2.21 -3.70 16 10 C -0.15 -2.95 6.16 36.01 0.22 -2.73 16 11 C 0.52 9.57 7.80 -10.98 -0.09 9.48 16 12 O -0.44 -10.11 14.09 5.56 0.08 -10.03 16 13 N -0.66 -8.87 5.38 -11.36 -0.06 -8.93 16 14 C 0.40 5.49 7.42 -155.13 -1.15 4.34 16 15 C -0.19 -1.78 9.84 -39.58 -0.39 -2.17 16 16 C -0.03 -0.27 9.88 -39.26 -0.39 -0.66 16 17 C -0.14 -1.48 5.74 -106.77 -0.61 -2.10 16 18 C -0.07 -0.58 9.77 -39.52 -0.39 -0.97 16 19 C -0.13 -1.14 9.73 -39.89 -0.39 -1.53 16 20 C -0.01 -0.13 6.27 -39.86 -0.25 -0.38 16 21 Cl -0.07 -0.70 28.91 -51.86 -1.50 -2.20 16 22 C -0.08 -1.15 9.72 -39.44 -0.38 -1.54 16 23 C 0.17 2.51 6.60 -84.86 -0.56 1.95 16 24 N -0.47 -7.95 7.81 -10.14 -0.08 -8.03 16 25 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 26 H 0.09 1.64 8.14 -51.91 -0.42 1.21 16 27 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 28 H 0.42 3.64 8.69 -40.82 -0.35 3.29 16 29 H 0.14 0.78 8.06 -52.48 -0.42 0.36 16 30 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 31 H 0.14 0.66 8.06 -52.49 -0.42 0.23 16 32 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 33 H 0.15 2.19 8.06 -52.49 -0.42 1.77 16 LS Contribution 326.16 15.07 4.92 4.92 Total: -1.00 -36.03 326.16 -10.18 -46.21 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: -2.86 Total: -0.14 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: -4.18 Total: -9.03 kcal Atomic # 7 Polarization: -42.78 SS G_CDS: 0.59 Total: -42.19 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.08 Total: -10.03 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -2.21 Total: -3.70 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.50 Total: -2.20 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -36.03 -10.18 -46.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337166325.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.303 kcal (2) G-P(sol) polarization free energy of solvation -36.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds