Wall clock time and date at job start Tue Mar 31 2020 14:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86801 * 119.99798 * 2 1 4 4 H 1.48499 * 109.47277 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47303 * 300.00206 * 3 2 1 6 6 H 1.48498 * 109.47087 * 60.00168 * 3 2 1 7 7 C 1.38798 * 120.00264 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00147 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99912 * 359.97438 * 7 2 1 10 10 C 1.80995 * 99.99939 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47099 * 179.97438 * 10 9 7 12 12 O 1.21273 * 120.00078 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99847 * 180.27765 * 11 10 9 14 14 C 1.39153 * 119.99845 * 174.62965 * 13 11 10 15 15 C 1.40128 * 119.21886 * 185.10737 * 14 13 11 16 16 C 1.36284 * 119.88344 * 179.69533 * 15 14 13 17 17 C 1.40946 * 118.27523 * 0.58267 * 16 15 14 18 18 C 1.40372 * 121.25006 * 179.66162 * 17 16 15 19 19 C 1.36164 * 119.65665 * 180.02562 * 18 17 16 20 20 C 1.39426 * 120.83656 * 359.97438 * 19 18 17 21 21 Cl 1.73603 * 119.49537 * 179.97438 * 20 19 18 22 22 C 1.36239 * 121.01009 * 359.97438 * 20 19 18 23 23 C 1.40526 * 119.75410 * 0.04696 * 22 20 19 24 24 N 1.31656 * 119.21701 * 5.38114 * 14 13 11 25 25 H 0.97001 * 120.00720 * 359.97438 * 1 2 3 26 26 H 1.09008 * 109.46864 * 60.00444 * 10 9 7 27 27 H 1.09000 * 109.47752 * 300.00058 * 10 9 7 28 28 H 0.96993 * 119.99955 * 354.62523 * 13 11 10 29 29 H 1.08003 * 120.05606 * 359.97438 * 15 14 13 30 30 H 1.08002 * 120.86362 * 180.26965 * 16 15 14 31 31 H 1.07998 * 120.17389 * 0.02562 * 18 17 16 32 32 H 1.07999 * 119.58017 * 179.97438 * 19 18 17 33 33 H 1.07999 * 120.12495 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8913 -0.0021 11 6 1.9875 -5.3027 -0.0017 12 8 0.7913 -5.5023 -0.0009 13 7 2.8443 -6.3430 0.0029 14 6 2.3601 -7.6427 0.1161 15 6 3.2684 -8.7038 0.2278 16 6 2.8090 -9.9814 0.3456 17 6 1.4155 -10.1932 0.3383 18 6 0.8745 -11.4837 0.4486 19 6 -0.4768 -11.6510 0.4375 20 6 -1.3316 -10.5559 0.3183 21 17 -3.0490 -10.8093 0.3073 22 6 -0.8396 -9.2900 0.2104 23 6 0.5497 -9.0787 0.2177 24 7 1.0594 -7.8466 0.1102 25 1 -0.4851 0.8400 0.0004 26 1 3.1252 -3.7316 0.8876 27 1 3.1239 -3.7309 -0.8925 28 1 3.7984 -6.1858 -0.0727 29 1 4.3308 -8.5090 0.2250 30 1 3.4948 -10.8107 0.4370 31 1 1.5265 -12.3395 0.5419 32 1 -0.8918 -12.6445 0.5220 33 1 -1.5148 -8.4521 0.1183 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337166325.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:35 Heat of formation + Delta-G solvation = 2.148508 kcal Electronic energy + Delta-G solvation = -20558.364401 eV Core-core repulsion = 17121.618637 eV Total energy + Delta-G solvation = -3436.745764 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 322.028 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.13843 -40.67348 -38.52890 -37.28388 -35.41989 -34.59433 -34.47524 -31.66651 -31.06414 -29.91534 -27.69208 -25.42843 -24.51653 -23.31901 -21.83107 -20.27174 -19.58337 -18.53214 -18.20860 -17.54148 -16.89177 -16.78446 -16.63293 -15.99646 -15.77587 -15.52282 -15.37208 -14.88319 -14.63117 -14.43656 -14.20680 -14.13538 -13.54721 -13.18026 -13.07307 -12.92532 -12.70176 -12.60636 -12.51578 -12.03141 -11.73479 -11.53017 -11.33620 -11.17078 -11.10016 -10.29174 -10.09323 -9.41854 -9.13382 -8.69004 -8.35583 -6.14390 -0.62047 -0.32637 0.96238 0.99820 1.20721 1.40916 1.41907 1.43623 1.56160 1.96920 1.99795 2.25766 2.98946 3.06697 3.14445 3.38442 3.59578 3.73371 3.86822 3.98333 3.99375 4.13314 4.27155 4.34574 4.46721 4.68308 4.78505 4.85856 4.86109 5.13850 5.22901 5.27008 5.41547 5.52198 5.77150 6.11875 6.19380 6.91096 7.05716 7.29637 8.73918 Molecular weight = 322.03amu Principal moments of inertia in cm(-1) A = 0.020712 B = 0.002590 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.565577 B =10806.867144 C =12136.425621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.011 3.989 3 Si 1.001 2.999 4 H -0.254 1.254 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.542 4.542 8 H 0.087 0.913 9 S -0.156 6.156 10 C -0.125 4.125 11 C 0.520 3.480 12 O -0.498 6.498 13 N -0.642 5.642 14 C 0.373 3.627 15 C -0.186 4.186 16 C -0.014 4.014 17 C -0.144 4.144 18 C -0.048 4.048 19 C -0.132 4.132 20 C -0.006 4.006 21 Cl -0.067 7.067 22 C -0.125 4.125 23 C 0.140 3.860 24 N -0.533 5.533 25 H 0.271 0.729 26 H 0.118 0.882 27 H 0.118 0.882 28 H 0.440 0.560 29 H 0.188 0.812 30 H 0.201 0.799 31 H 0.189 0.811 32 H 0.166 0.834 33 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.092 -27.869 1.111 30.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.194 4.194 3 Si 0.823 3.177 4 H -0.177 1.177 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.690 4.690 8 H 0.105 0.895 9 S 0.071 5.929 10 C -0.276 4.276 11 C 0.305 3.695 12 O -0.367 6.367 13 N -0.292 5.292 14 C 0.128 3.872 15 C -0.208 4.208 16 C -0.039 4.039 17 C -0.147 4.147 18 C -0.067 4.067 19 C -0.151 4.151 20 C -0.035 4.035 21 Cl -0.038 7.038 22 C -0.145 4.145 23 C 0.018 3.982 24 N -0.251 5.251 25 H 0.080 0.920 26 H 0.136 0.864 27 H 0.137 0.863 28 H 0.281 0.719 29 H 0.205 0.795 30 H 0.218 0.782 31 H 0.206 0.794 32 H 0.184 0.816 33 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 8.156 -27.355 1.041 28.564 hybrid contribution 1.592 1.375 -0.048 2.104 sum 9.747 -25.980 0.992 27.767 Atomic orbital electron populations 1.70200 1.08086 1.28554 1.48112 1.26174 0.95967 1.03483 0.93773 0.84869 0.78707 0.76162 0.77971 1.17706 1.20061 1.20061 1.23231 0.95434 0.91657 1.58693 0.89503 1.85741 1.10516 0.99534 1.97083 1.23366 1.03720 0.93002 1.07523 1.20506 0.86562 0.86675 0.75758 1.90822 1.16928 1.85177 1.43818 1.43483 1.12013 1.02442 1.71275 1.19193 0.89445 0.86094 0.92506 1.21737 1.01894 0.91384 1.05761 1.21864 0.93161 0.98033 0.90883 1.19238 0.95523 0.94543 1.05410 1.21406 0.94829 0.95937 0.94486 1.21080 0.93298 0.98421 1.02257 1.20747 0.85542 0.94475 1.02703 1.98380 1.11855 1.96870 1.96744 1.20594 0.94101 0.96548 1.03255 1.18705 0.93749 0.88159 0.97572 1.67922 1.14146 1.23924 1.19063 0.92043 0.86422 0.86344 0.71867 0.79527 0.78207 0.79383 0.81641 0.86780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.69 13.22 21.65 0.29 -56.40 16 2 C 0.01 0.60 5.49 84.86 0.47 1.07 16 3 Si 1.00 43.59 29.55 68.60 2.03 45.62 16 4 H -0.25 -10.18 7.11 99.48 0.71 -9.47 16 5 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 6 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 7 C -0.54 -30.80 9.50 67.95 0.65 -30.16 16 8 H 0.09 4.52 7.80 -2.91 -0.02 4.50 16 9 S -0.16 -8.72 20.57 -56.49 -1.16 -9.88 16 10 C -0.12 -4.84 6.16 71.24 0.44 -4.40 16 11 C 0.52 19.83 7.80 87.66 0.68 20.51 16 12 O -0.50 -24.65 14.09 -3.01 -0.04 -24.69 16 13 N -0.64 -16.67 5.38 -308.26 -1.66 -18.33 16 14 C 0.37 10.05 7.42 133.48 0.99 11.04 16 15 C -0.19 -2.71 9.84 22.27 0.22 -2.49 16 16 C -0.01 -0.17 9.88 22.48 0.22 0.06 16 17 C -0.14 -2.72 5.74 -21.26 -0.12 -2.84 16 18 C -0.05 -0.59 9.77 22.31 0.22 -0.37 16 19 C -0.13 -2.01 9.73 22.07 0.21 -1.79 16 20 C -0.01 -0.14 6.27 22.09 0.14 -0.01 16 21 Cl -0.07 -1.49 28.91 -2.72 -0.08 -1.57 16 22 C -0.12 -3.78 9.72 22.36 0.22 -3.56 16 23 C 0.14 4.21 6.60 40.25 0.27 4.48 16 24 N -0.53 -19.12 7.81 -185.98 -1.45 -20.57 16 25 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 26 H 0.12 3.98 8.14 -2.39 -0.02 3.96 16 27 H 0.12 3.98 8.14 -2.40 -0.02 3.96 16 28 H 0.44 6.57 8.69 -92.71 -0.81 5.76 16 29 H 0.19 0.93 8.06 -2.91 -0.02 0.90 16 30 H 0.20 0.12 8.06 -2.91 -0.02 0.10 16 31 H 0.19 0.38 8.06 -2.91 -0.02 0.36 16 32 H 0.17 1.49 8.06 -2.91 -0.02 1.47 16 33 H 0.11 4.05 8.06 -2.91 -0.02 4.02 16 Total: -1.00 -88.74 326.16 2.88 -85.85 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: 0.37 Total: 8.43 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: 4.60 Total: -8.46 kcal Atomic # 7 Polarization: -92.48 SS G_CDS: -2.82 Total: -95.30 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.04 Total: -24.69 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: -8.72 SS G_CDS: -1.16 Total: -9.88 kcal Atomic # 17 Polarization: -1.49 SS G_CDS: -0.08 Total: -1.57 kcal Total: -88.74 2.88 -85.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337166325.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.002 kcal (2) G-P(sol) polarization free energy of solvation -88.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds