Wall clock time and date at job start Tue Mar 31 2020 13:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.46866 * 2 1 4 4 C 1.52999 * 109.47247 * 240.00018 * 2 1 3 5 5 C 1.53004 * 109.47215 * 65.33716 * 4 2 1 6 6 C 1.52996 * 109.47501 * 185.84653 * 5 4 2 7 7 C 1.52993 * 109.47325 * 180.02562 * 6 5 4 8 8 C 1.53006 * 109.47209 * 59.99938 * 7 6 5 9 9 C 1.52996 * 109.47028 * 300.00244 * 8 7 6 10 10 C 1.52993 * 109.47325 * 59.99827 * 9 8 7 11 11 C 1.50701 * 109.46999 * 119.99929 * 2 1 3 12 12 O 1.21283 * 119.99733 * 112.73684 * 11 2 1 13 13 N 1.34774 * 120.00140 * 292.73233 * 11 2 1 14 14 C 1.46924 * 120.62986 * 5.47199 * 13 11 2 15 15 C 1.52758 * 109.01107 * 233.58519 * 14 13 11 16 16 C 1.53037 * 109.38509 * 305.58870 * 15 14 13 17 17 C 1.53001 * 109.46409 * 181.26088 * 16 15 14 18 18 C 1.50692 * 109.46808 * 64.93365 * 17 16 15 19 19 H 1.08001 * 120.00468 * 359.97438 * 18 17 16 20 20 C 1.37883 * 119.99623 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00031 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 120.00063 * 359.97438 * 20 18 17 23 23 H 1.48492 * 109.46872 * 90.00539 * 22 20 18 24 24 H 1.48497 * 109.46987 * 210.00522 * 22 20 18 25 25 H 1.48497 * 109.46844 * 330.00350 * 22 20 18 26 26 C 1.53043 * 109.53540 * 61.24028 * 16 15 14 27 27 C 1.46923 * 120.63077 * 185.75612 * 13 11 2 28 28 H 1.09001 * 109.47182 * 174.43174 * 1 2 3 29 29 H 1.09007 * 109.47210 * 294.43488 * 1 2 3 30 30 H 1.09000 * 109.47615 * 54.43463 * 1 2 3 31 31 H 1.08999 * 109.46849 * 305.34160 * 4 2 1 32 32 H 1.08994 * 109.47676 * 185.34212 * 4 2 1 33 33 H 1.08998 * 109.47159 * 305.84967 * 5 4 2 34 34 H 1.09006 * 109.46580 * 300.00477 * 6 5 4 35 35 H 1.08999 * 109.47114 * 59.99804 * 6 5 4 36 36 H 1.09000 * 109.47497 * 300.00051 * 7 6 5 37 37 H 1.09001 * 109.47383 * 179.97438 * 7 6 5 38 38 H 1.08996 * 109.46761 * 179.97438 * 8 7 6 39 39 H 1.08998 * 109.47020 * 60.00184 * 8 7 6 40 40 H 1.09005 * 109.46876 * 300.00131 * 9 8 7 41 41 H 1.08999 * 109.47114 * 180.02562 * 9 8 7 42 42 H 1.09001 * 109.47383 * 180.02562 * 10 9 8 43 43 H 1.09000 * 109.47497 * 59.99949 * 10 9 8 44 44 H 1.09000 * 109.58580 * 353.42431 * 14 13 11 45 45 H 1.09001 * 109.58352 * 113.84299 * 14 13 11 46 46 H 1.08997 * 109.56494 * 185.55753 * 15 14 13 47 47 H 1.08997 * 109.35920 * 65.50272 * 15 14 13 48 48 H 1.09003 * 109.46038 * 301.22566 * 16 15 14 49 49 H 1.08995 * 109.47238 * 184.93516 * 17 16 15 50 50 H 1.09004 * 109.46328 * 304.93212 * 17 16 15 51 51 H 0.96996 * 120.00167 * 180.02562 * 21 20 18 52 52 H 1.08997 * 109.49898 * 178.68945 * 26 16 15 53 53 H 1.08994 * 109.52485 * 58.60305 * 26 16 15 54 54 H 1.09002 * 109.58678 * 246.15766 * 27 13 11 55 55 H 1.09001 * 109.58967 * 6.44038 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6425 0.0733 -2.4949 6 6 2.0233 -0.7181 -3.7477 7 6 1.6264 0.0767 -4.9933 8 6 2.3592 1.4199 -4.9962 9 6 1.9784 2.2113 -3.7434 10 6 2.3753 1.4165 -2.4978 11 6 2.0323 -0.7104 1.2305 12 8 2.6171 -1.7675 1.1240 13 7 1.8317 -0.1710 2.4492 14 6 1.0229 1.0456 2.6053 15 6 1.8340 2.0871 3.3741 16 6 2.3191 1.4809 4.6929 17 6 3.1051 2.5323 5.4787 18 6 2.1840 3.6587 5.8709 19 1 1.1423 3.6279 5.5876 20 6 2.6715 4.7290 6.5905 21 7 1.8676 5.7118 6.9332 22 14 4.4735 4.7826 7.0798 23 1 5.2555 5.4610 6.0152 24 1 4.6184 5.5314 8.3539 25 1 4.9790 3.3979 7.2592 26 6 3.2228 0.2804 4.4025 27 6 2.4227 -0.7848 3.6460 28 1 -0.3633 -1.0228 -0.0997 29 1 -0.3634 0.4251 0.9357 30 1 -0.3634 0.5977 -0.8359 31 1 1.6006 -1.7175 -1.2983 32 1 3.1257 -0.8049 -1.2028 33 1 0.5664 0.2462 -2.4875 34 1 3.0995 -0.8910 -3.7550 35 1 1.5016 -1.6751 -3.7454 36 1 0.5503 0.2500 -4.9862 37 1 1.8981 -0.4869 -5.8858 38 1 2.0767 1.9859 -5.8838 39 1 3.4353 1.2466 -5.0034 40 1 0.9023 2.3845 -3.7362 41 1 2.5001 3.1683 -3.7457 42 1 2.1037 1.9801 -1.6053 43 1 3.4514 1.2431 -2.5049 44 1 0.7622 1.4397 1.6231 45 1 0.1143 0.8116 3.1603 46 1 1.2094 2.9560 3.5812 47 1 2.6928 2.3902 2.7753 48 1 1.4606 1.1554 5.2804 49 1 3.5247 2.0770 6.3757 50 1 3.9118 2.9219 4.8576 51 1 2.2106 6.4650 7.4391 52 1 3.5866 -0.1367 5.3415 53 1 4.0689 0.6001 3.7943 54 1 1.6307 -1.1711 4.2876 55 1 3.0836 -1.5997 3.3504 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565424607.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:48 Heat of formation + Delta-G solvation = -103.249225 kcal Electronic energy + Delta-G solvation = -28460.941882 eV Core-core repulsion = 24880.755077 eV Total energy + Delta-G solvation = -3580.186805 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 321.241 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.54338 -39.74296 -38.71213 -35.96990 -35.59155 -34.05498 -32.42305 -31.62275 -31.21021 -30.23754 -27.30051 -26.56338 -24.67405 -24.15671 -23.47333 -22.82398 -21.70824 -20.85582 -20.40493 -19.77330 -18.84449 -18.11858 -16.98543 -16.51680 -16.38715 -16.11625 -15.63640 -15.37044 -15.14347 -15.07488 -14.90029 -14.76535 -14.64960 -14.51103 -14.15352 -13.97276 -13.80274 -13.50418 -13.14786 -13.05361 -13.03223 -12.91152 -12.70434 -12.62849 -12.40658 -12.16339 -12.11316 -11.95589 -11.93493 -11.89851 -11.72010 -11.58999 -11.39201 -11.24059 -11.12969 -10.93448 -10.88382 -10.74618 -10.72023 -10.53749 -9.60137 -8.25060 -6.26191 1.35195 1.37623 1.48134 1.63057 2.04989 2.37713 3.10675 3.45263 3.69735 3.81460 3.88612 3.95148 3.98838 4.05725 4.09195 4.15283 4.20355 4.33727 4.38348 4.40263 4.49356 4.54109 4.60110 4.66397 4.66855 4.68987 4.70602 4.77649 4.80800 4.86558 4.90290 4.93431 4.95753 5.02195 5.09179 5.13338 5.16063 5.20221 5.20472 5.25739 5.31784 5.32103 5.36856 5.38472 5.42039 5.45384 5.46477 5.55390 5.62047 5.68716 5.72874 5.74697 6.34792 6.46165 6.81210 7.17611 7.37669 8.91007 Molecular weight = 321.24amu Principal moments of inertia in cm(-1) A = 0.015599 B = 0.002743 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.590297 B =10206.593270 C =11173.412903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.107 4.107 3 H 0.107 0.893 4 C -0.086 4.086 5 C -0.080 4.080 6 C -0.114 4.114 7 C -0.116 4.116 8 C -0.121 4.121 9 C -0.119 4.119 10 C -0.119 4.119 11 C 0.513 3.487 12 O -0.587 6.587 13 N -0.607 5.607 14 C 0.107 3.893 15 C -0.118 4.118 16 C -0.069 4.069 17 C -0.007 4.007 18 C -0.513 4.513 19 H 0.044 0.956 20 C 0.005 3.995 21 N -0.951 5.951 22 Si 0.940 3.060 23 H -0.271 1.271 24 H -0.288 1.288 25 H -0.251 1.251 26 C -0.122 4.122 27 C 0.115 3.885 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.059 0.941 32 H 0.048 0.952 33 H 0.085 0.915 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.054 0.946 40 H 0.067 0.933 41 H 0.060 0.940 42 H 0.065 0.935 43 H 0.051 0.949 44 H 0.113 0.887 45 H 0.078 0.922 46 H 0.068 0.932 47 H 0.054 0.946 48 H 0.059 0.941 49 H 0.014 0.986 50 H 0.011 0.989 51 H 0.263 0.737 52 H 0.078 0.922 53 H 0.054 0.946 54 H 0.075 0.925 55 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.121 -11.811 -22.516 25.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.128 4.128 3 H 0.125 0.875 4 C -0.124 4.124 5 C -0.098 4.098 6 C -0.152 4.152 7 C -0.154 4.154 8 C -0.158 4.158 9 C -0.156 4.156 10 C -0.156 4.156 11 C 0.304 3.696 12 O -0.468 6.468 13 N -0.339 5.339 14 C -0.015 4.015 15 C -0.156 4.156 16 C -0.088 4.088 17 C -0.045 4.045 18 C -0.551 4.551 19 H 0.062 0.938 20 C -0.191 4.191 21 N -0.592 5.592 22 Si 0.764 3.236 23 H -0.196 1.196 24 H -0.214 1.214 25 H -0.175 1.175 26 C -0.160 4.160 27 C -0.007 4.007 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.109 0.891 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.103 0.897 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.070 0.930 44 H 0.131 0.869 45 H 0.096 0.904 46 H 0.087 0.913 47 H 0.073 0.927 48 H 0.077 0.923 49 H 0.032 0.968 50 H 0.029 0.971 51 H 0.072 0.928 52 H 0.097 0.903 53 H 0.073 0.927 54 H 0.093 0.907 55 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.825 -12.212 -22.470 25.639 hybrid contribution 0.913 0.552 0.935 1.418 sum -0.912 -11.660 -21.534 24.505 Atomic orbital electron populations 1.22049 0.91262 1.03230 1.04222 1.21392 0.98978 1.00937 0.91484 0.87514 1.21359 1.00219 0.98532 0.92290 1.21174 1.00927 0.94535 0.93156 1.21567 1.00918 0.98466 0.94250 1.21514 1.00552 0.95887 0.97420 1.21547 1.00071 0.96273 0.97913 1.21525 1.01606 0.98197 0.94287 1.21666 0.99801 0.95825 0.98348 1.21308 0.78193 0.84861 0.85281 1.90630 1.44855 1.24371 1.86974 1.48249 1.51177 1.27943 1.06553 1.22045 0.93362 0.83593 1.02502 1.21745 1.00096 0.98064 0.95667 1.20917 0.97711 0.94210 0.95958 1.19583 0.95485 0.94134 0.95284 1.21445 0.96650 1.03793 1.33256 0.93764 1.25899 1.01981 0.95329 0.95933 1.70048 1.37522 1.10591 1.41042 0.85811 0.80761 0.79213 0.77773 1.19602 1.21378 1.17468 1.21937 0.98100 0.95636 1.00335 1.21558 0.97634 0.95559 0.85993 0.92397 0.90953 0.89132 0.92196 0.93347 0.89714 0.92881 0.91879 0.91510 0.91716 0.91531 0.92688 0.91417 0.92131 0.91686 0.93011 0.86888 0.90352 0.91341 0.92709 0.92291 0.96798 0.97103 0.92765 0.90334 0.92672 0.90671 0.90225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 8.33 71.98 0.60 -1.69 16 2 C -0.11 -2.11 1.77 -11.54 -0.02 -2.13 16 3 H 0.11 1.95 5.79 -2.39 -0.01 1.93 16 4 C -0.09 -1.67 3.44 30.60 0.11 -1.57 16 5 C -0.08 -1.17 2.07 -10.79 -0.02 -1.19 16 6 C -0.11 -1.62 5.20 30.59 0.16 -1.46 16 7 C -0.12 -1.39 5.92 30.59 0.18 -1.20 16 8 C -0.12 -1.49 5.92 30.59 0.18 -1.31 16 9 C -0.12 -1.56 5.92 30.59 0.18 -1.38 16 10 C -0.12 -1.80 4.98 30.59 0.15 -1.64 16 11 C 0.51 14.06 7.03 87.66 0.62 14.68 16 12 O -0.59 -20.24 15.44 -3.04 -0.05 -20.28 16 13 N -0.61 -16.15 2.98 -819.74 -2.44 -18.59 16 14 C 0.11 2.58 5.03 86.22 0.43 3.02 16 15 C -0.12 -3.76 5.17 30.53 0.16 -3.61 16 16 C -0.07 -2.47 2.10 -10.77 -0.02 -2.50 16 17 C -0.01 -0.33 3.52 29.85 0.10 -0.23 16 18 C -0.51 -28.05 8.94 25.60 0.23 -27.82 16 19 H 0.04 2.61 7.30 -2.91 -0.02 2.59 16 20 C 0.01 0.29 5.47 84.66 0.46 0.75 16 21 N -0.95 -58.35 13.96 21.45 0.30 -58.05 16 22 Si 0.94 43.94 27.47 68.60 1.88 45.82 16 23 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 24 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 25 H -0.25 -11.01 6.54 99.48 0.65 -10.36 16 26 C -0.12 -3.68 5.36 30.68 0.16 -3.51 16 27 C 0.12 3.17 6.42 86.37 0.55 3.72 16 28 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.07 1.08 5.30 -2.38 -0.01 1.07 16 30 H 0.09 1.02 6.72 -2.39 -0.02 1.00 16 31 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.05 1.13 8.05 -2.39 -0.02 1.11 16 33 H 0.08 1.09 6.44 -2.39 -0.02 1.07 16 34 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 35 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.07 0.81 8.14 -2.38 -0.02 0.80 16 41 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.06 0.98 6.48 -2.39 -0.02 0.96 16 43 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.11 2.15 4.51 -2.39 -0.01 2.14 16 45 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 46 H 0.07 2.50 6.91 -2.39 -0.02 2.48 16 47 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 48 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 49 H 0.01 0.62 7.20 -2.39 -0.02 0.60 16 50 H 0.01 0.48 7.57 -2.39 -0.02 0.46 16 51 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 52 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 53 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 54 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 55 H 0.08 2.31 7.04 -2.39 -0.02 2.29 16 Total: -1.00 -66.65 399.24 4.68 -61.97 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: 0.77 Total: 18.19 kcal Atomic # 6 Polarization: -33.28 SS G_CDS: 4.22 Total: -29.07 kcal Atomic # 7 Polarization: -74.49 SS G_CDS: -2.14 Total: -76.63 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.05 Total: -20.28 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.88 Total: 45.82 kcal Total: -66.65 4.68 -61.97 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565424607.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.279 kcal (2) G-P(sol) polarization free energy of solvation -66.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds