Wall clock time and date at job start Tue Mar 31 2020 13:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.50638 * 2 1 4 4 C 1.53033 * 109.50455 * 120.12194 * 2 1 3 5 5 N 1.46849 * 109.52173 * 179.11589 * 4 2 1 6 6 C 1.46906 * 110.99955 * 174.16348 * 5 4 2 7 7 C 1.52998 * 109.46945 * 200.15136 * 6 5 4 8 8 C 1.50699 * 115.55471 * 54.58984 * 7 6 5 9 9 H 1.07996 * 120.00075 * 215.53237 * 8 7 6 10 10 C 1.37877 * 119.99737 * 35.53849 * 8 7 6 11 11 N 1.31513 * 120.00276 * 11.13964 * 10 8 7 12 12 Si 1.86801 * 119.99718 * 191.42661 * 10 8 7 13 13 H 1.48504 * 109.47190 * 179.72242 * 12 10 8 14 14 H 1.48505 * 109.46578 * 299.71665 * 12 10 8 15 15 H 1.48493 * 109.47308 * 59.71837 * 12 10 8 16 16 C 1.53001 * 117.49611 * 200.26369 * 7 6 5 17 17 C 1.53002 * 117.49330 * 268.91890 * 7 6 5 18 18 C 1.46844 * 111.19842 * 298.25645 * 5 4 2 19 19 C 1.53037 * 109.52513 * 61.74335 * 18 5 4 20 20 C 1.53119 * 109.27631 * 300.82273 * 19 18 5 21 21 H 1.09003 * 109.52169 * 297.67874 * 20 19 18 22 22 N 1.46897 * 109.52306 * 177.55836 * 20 19 18 23 23 C 1.46966 * 111.00136 * 72.57749 * 22 20 19 24 24 C 1.53052 * 109.36279 * 176.81181 * 23 22 20 25 25 N 1.46958 * 109.36227 * 58.40703 * 24 23 22 26 26 C 1.46897 * 110.99629 * 176.80922 * 25 24 23 27 27 C 1.46958 * 110.87946 * 300.67218 * 25 24 23 28 28 C 1.46959 * 110.99971 * 308.78506 * 22 20 19 29 29 H 1.08998 * 109.47530 * 184.29758 * 1 2 3 30 30 H 1.09001 * 109.47059 * 304.29131 * 1 2 3 31 31 H 1.09000 * 109.47494 * 64.28779 * 1 2 3 32 32 H 1.09003 * 109.46448 * 59.10484 * 4 2 1 33 33 H 1.08999 * 109.46535 * 299.13195 * 4 2 1 34 34 H 1.09000 * 109.47205 * 80.14475 * 6 5 4 35 35 H 1.09005 * 109.46477 * 320.14677 * 6 5 4 36 36 H 0.96996 * 120.00097 * 174.97252 * 11 10 8 37 37 H 1.09003 * 117.50010 * 215.00026 * 16 7 6 38 38 H 1.09007 * 117.49766 * 0.02562 * 16 7 6 39 39 H 1.08997 * 117.50371 * 359.97438 * 17 7 6 40 40 H 1.09005 * 117.49486 * 144.97676 * 17 7 6 41 41 H 1.09001 * 109.46393 * 181.75844 * 18 5 4 42 42 H 1.08996 * 109.46683 * 301.73467 * 18 5 4 43 43 H 1.09002 * 109.49739 * 60.75971 * 19 18 5 44 44 H 1.08999 * 109.50738 * 180.87763 * 19 18 5 45 45 H 1.09001 * 109.48812 * 296.78211 * 23 22 20 46 46 H 1.08997 * 109.48399 * 56.84957 * 23 22 20 47 47 H 1.08994 * 109.49017 * 298.43883 * 24 23 22 48 48 H 1.09006 * 109.48474 * 178.37097 * 24 23 22 49 49 H 1.09003 * 109.46914 * 183.79753 * 26 25 24 50 50 H 1.09002 * 109.47583 * 303.79701 * 26 25 24 51 51 H 1.08995 * 109.47336 * 63.79930 * 26 25 24 52 52 H 1.08991 * 109.48908 * 299.35778 * 27 25 24 53 53 H 1.08997 * 109.48576 * 179.28843 * 27 25 24 54 54 H 1.09006 * 109.48610 * 303.15182 * 28 22 20 55 55 H 1.09001 * 109.49129 * 63.19191 * 28 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0409 -0.7239 1.2477 5 7 3.5092 -0.7426 1.2374 6 6 4.0373 -1.3070 2.4867 7 6 5.4913 -0.8677 2.6702 8 6 5.7324 0.6191 2.6214 9 1 6.6392 1.0049 2.1796 10 6 4.7952 1.4868 3.1408 11 7 3.8030 1.0239 3.8694 12 14 4.9304 3.3190 2.8030 13 1 3.8051 4.0284 3.4631 14 1 6.2186 3.8274 3.3392 15 1 4.8750 3.5578 1.3384 16 6 6.3650 -1.6943 3.6159 17 6 6.5815 -1.7792 2.1029 18 6 4.0228 -1.4731 0.0717 19 6 3.5710 -0.7716 -1.2112 20 6 2.0411 -0.7234 -1.2490 21 1 1.6450 -1.7387 -1.2709 22 7 1.6023 0.0005 -2.4496 23 6 1.8181 -0.8059 -3.6592 24 6 1.2766 -0.0512 -4.8756 25 7 1.9547 1.2480 -4.9844 26 6 1.5159 1.9718 -6.1850 27 6 1.7389 2.0544 -3.7750 28 6 2.2804 1.2997 -2.5586 29 1 -0.3634 -1.0247 0.0770 30 1 -0.3633 0.5790 0.8491 31 1 -0.3634 0.4458 -0.9259 32 1 1.6648 -1.7470 1.2537 33 1 1.6906 -0.2031 2.1388 34 1 3.9891 -2.3950 2.4429 35 1 3.4413 -0.9504 3.3269 36 1 3.1858 1.6392 4.2951 37 1 7.1141 -1.1628 4.2028 38 1 5.9040 -2.5514 4.1070 39 1 6.2629 -2.6918 1.5994 40 1 7.4729 -1.3033 1.6940 41 1 5.1119 -1.4964 0.1086 42 1 3.6372 -2.4925 0.0830 43 1 3.9677 0.2435 -1.2298 44 1 3.9393 -1.3228 -2.0765 45 1 2.8849 -0.9879 -3.7893 46 1 1.2960 -1.7575 -3.5596 47 1 0.2046 0.1069 -4.7578 48 1 1.4616 -0.6347 -5.7775 49 1 2.0818 2.8988 -6.2774 50 1 1.6868 1.3525 -7.0655 51 1 0.4536 2.2014 -6.1029 52 1 0.6722 2.2364 -3.6448 53 1 2.2610 3.0060 -3.8745 54 1 2.0954 1.8832 -1.6566 55 1 3.3525 1.1416 -2.6758 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602800708.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:04 Heat of formation + Delta-G solvation = 33.831408 kcal Electronic energy + Delta-G solvation = -29976.482740 eV Core-core repulsion = 26434.532948 eV Total energy + Delta-G solvation = -3541.949792 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 321.248 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.17106 -39.50627 -38.13611 -36.08601 -34.00523 -33.85111 -32.13860 -31.88511 -29.02918 -27.80526 -27.20678 -26.23924 -24.85255 -24.59865 -23.24130 -22.88026 -22.40362 -20.95459 -20.69265 -19.79016 -18.00983 -17.41347 -16.60517 -16.32908 -16.19519 -15.96281 -15.87973 -15.66366 -15.56809 -15.37919 -15.08588 -15.04262 -14.47946 -14.20630 -13.94216 -13.43079 -13.40005 -13.31157 -13.18985 -13.06814 -12.79616 -12.71602 -12.67802 -12.54568 -12.44710 -12.30018 -12.13939 -12.07705 -11.94181 -11.87686 -11.65329 -11.60465 -11.39628 -11.06413 -10.97115 -10.86140 -10.41831 -9.84755 -9.35814 -9.12034 -8.69803 -7.88724 -5.94140 1.44288 1.47985 1.53379 2.52394 2.89945 3.00398 3.10978 3.36967 3.74363 3.79729 3.87010 4.04302 4.10419 4.14118 4.23337 4.26731 4.35179 4.38363 4.43369 4.48909 4.53769 4.55422 4.61980 4.64686 4.67698 4.69902 4.77221 4.80148 4.84283 4.85588 4.89789 4.92144 4.95764 4.98049 5.01266 5.05312 5.07992 5.11772 5.15409 5.18902 5.28126 5.33573 5.42998 5.45190 5.55425 5.59144 5.69341 5.99875 6.01456 6.08668 6.19274 6.23688 6.49905 6.66366 6.76584 7.03355 7.66022 9.11540 Molecular weight = 321.25amu Principal moments of inertia in cm(-1) A = 0.014336 B = 0.004090 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.648268 B = 6843.959117 C = 7385.600870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.069 4.069 3 H 0.052 0.948 4 C 0.075 3.925 5 N -0.517 5.517 6 C 0.116 3.884 7 C 0.046 3.954 8 C -0.490 4.490 9 H 0.035 0.965 10 C 0.061 3.939 11 N -0.890 5.890 12 Si 0.931 3.069 13 H -0.286 1.286 14 H -0.282 1.282 15 H -0.279 1.279 16 C -0.209 4.209 17 C -0.197 4.197 18 C 0.066 3.934 19 C -0.133 4.133 20 C 0.104 3.896 21 H 0.083 0.917 22 N -0.525 5.525 23 C 0.054 3.946 24 C 0.063 3.937 25 N -0.560 5.560 26 C 0.027 3.973 27 C 0.065 3.935 28 C 0.055 3.945 29 H 0.055 0.945 30 H 0.043 0.957 31 H 0.069 0.931 32 H 0.021 0.979 33 H 0.054 0.946 34 H -0.009 1.009 35 H 0.088 0.912 36 H 0.255 0.745 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.061 0.939 42 H 0.021 0.979 43 H 0.054 0.946 44 H 0.070 0.930 45 H 0.034 0.966 46 H 0.090 0.910 47 H 0.039 0.961 48 H 0.093 0.907 49 H 0.070 0.930 50 H 0.078 0.922 51 H 0.028 0.972 52 H 0.039 0.961 53 H 0.080 0.920 54 H 0.067 0.933 55 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.905 -2.985 -16.840 19.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.088 4.088 3 H 0.070 0.930 4 C -0.054 4.054 5 N -0.240 5.240 6 C -0.012 4.012 7 C 0.045 3.955 8 C -0.527 4.527 9 H 0.053 0.947 10 C -0.140 4.140 11 N -0.527 5.527 12 Si 0.759 3.241 13 H -0.211 1.211 14 H -0.208 1.208 15 H -0.205 1.205 16 C -0.248 4.248 17 C -0.234 4.234 18 C -0.062 4.062 19 C -0.173 4.173 20 C -0.005 4.005 21 H 0.101 0.899 22 N -0.248 5.248 23 C -0.074 4.074 24 C -0.065 4.065 25 N -0.285 5.285 26 C -0.120 4.120 27 C -0.063 4.063 28 C -0.073 4.073 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.040 0.960 33 H 0.072 0.928 34 H 0.009 0.991 35 H 0.106 0.894 36 H 0.065 0.935 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.088 0.912 41 H 0.080 0.920 42 H 0.039 0.961 43 H 0.073 0.927 44 H 0.088 0.912 45 H 0.053 0.947 46 H 0.108 0.892 47 H 0.058 0.942 48 H 0.111 0.889 49 H 0.089 0.911 50 H 0.097 0.903 51 H 0.046 0.954 52 H 0.058 0.942 53 H 0.099 0.901 54 H 0.086 0.914 55 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -8.976 -2.428 -16.850 19.246 hybrid contribution 0.333 0.254 0.496 0.650 sum -8.643 -2.174 -16.353 18.624 Atomic orbital electron populations 1.21567 0.93302 1.01609 1.01676 1.21040 0.96405 0.98729 0.92654 0.92977 1.21980 0.87939 0.97475 0.97970 1.61474 1.06519 1.54302 1.01680 1.21439 0.96177 0.91081 0.92481 1.19004 0.88497 0.91342 0.96612 1.20371 1.03389 0.90123 1.38815 0.94659 1.25122 0.94366 1.00439 0.94101 1.69877 1.16772 1.34501 1.31590 0.86064 0.77011 0.82792 0.78210 1.21145 1.20779 1.20517 1.22962 1.06294 1.03532 0.91989 1.22880 1.02776 1.02164 0.95590 1.21966 0.99804 0.93752 0.90725 1.22117 0.97638 1.00827 0.96668 1.21622 0.92081 0.97223 0.89545 0.89922 1.62404 1.56654 1.03587 1.02170 1.22223 0.99474 0.96675 0.89011 1.22157 0.96118 0.90187 0.98060 1.62163 1.58456 1.04676 1.03206 1.22366 0.98383 0.99145 0.92150 1.22086 0.99225 0.96163 0.88856 1.22138 0.96343 0.91082 0.97749 0.92569 0.93747 0.91171 0.96045 0.92765 0.99079 0.89421 0.93497 0.91449 0.90810 0.90107 0.91189 0.92016 0.96113 0.92747 0.91179 0.94747 0.89217 0.94223 0.88907 0.91113 0.90304 0.95367 0.94227 0.90125 0.91419 0.94891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.27 9.12 71.98 0.66 -2.62 16 2 C -0.07 -2.18 2.29 -10.74 -0.02 -2.21 16 3 H 0.05 1.92 6.48 -2.39 -0.02 1.91 16 4 C 0.08 2.80 4.71 86.32 0.41 3.20 16 5 N -0.52 -21.78 4.20 -896.36 -3.76 -25.54 16 6 C 0.12 5.38 4.11 86.30 0.36 5.74 16 7 C 0.05 2.27 1.69 -52.93 -0.09 2.18 16 8 C -0.49 -26.84 8.73 25.60 0.22 -26.62 16 9 H 0.04 1.99 7.84 -2.91 -0.02 1.97 16 10 C 0.06 3.30 5.17 84.65 0.44 3.73 16 11 N -0.89 -48.51 10.78 21.45 0.23 -48.28 16 12 Si 0.93 44.11 29.56 68.60 2.03 46.13 16 13 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 14 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 15 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 16 C -0.21 -9.54 9.96 30.62 0.30 -9.24 16 17 C -0.20 -8.49 8.50 30.62 0.26 -8.23 16 18 C 0.07 2.42 5.27 86.33 0.45 2.88 16 19 C -0.13 -4.19 4.61 30.65 0.14 -4.05 16 20 C 0.10 2.88 1.66 45.00 0.07 2.96 16 21 H 0.08 2.18 7.98 -2.39 -0.02 2.16 16 22 N -0.53 -12.92 3.93 -869.96 -3.41 -16.33 16 23 C 0.05 1.12 5.37 86.31 0.46 1.59 16 24 C 0.06 1.14 5.62 86.31 0.49 1.63 16 25 N -0.56 -11.37 4.97 -921.95 -4.58 -15.95 16 26 C 0.03 0.42 9.60 127.69 1.23 1.64 16 27 C 0.06 1.44 5.62 86.31 0.49 1.93 16 28 C 0.06 1.47 4.69 86.31 0.40 1.87 16 29 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.07 1.76 7.56 -2.39 -0.02 1.75 16 32 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.05 2.28 7.93 -2.39 -0.02 2.26 16 34 H -0.01 -0.39 7.94 -2.39 -0.02 -0.41 16 35 H 0.09 4.56 5.65 -2.38 -0.01 4.54 16 36 H 0.26 13.55 8.32 -92.71 -0.77 12.78 16 37 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 38 H 0.07 3.13 8.14 -2.38 -0.02 3.11 16 39 H 0.08 3.16 7.92 -2.39 -0.02 3.14 16 40 H 0.07 3.02 8.14 -2.38 -0.02 3.00 16 41 H 0.06 2.45 6.07 -2.39 -0.01 2.44 16 42 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.05 1.97 6.25 -2.39 -0.01 1.96 16 44 H 0.07 1.97 6.97 -2.39 -0.02 1.95 16 45 H 0.03 0.79 6.92 -2.39 -0.02 0.78 16 46 H 0.09 1.62 8.05 -2.39 -0.02 1.60 16 47 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 48 H 0.09 1.37 8.13 -2.38 -0.02 1.35 16 49 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 50 H 0.08 1.00 8.13 -2.39 -0.02 0.98 16 51 H 0.03 0.41 8.14 -2.39 -0.02 0.39 16 52 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 53 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 54 H 0.07 2.01 6.39 -2.38 -0.02 2.00 16 55 H 0.03 0.99 6.35 -2.39 -0.02 0.97 16 Total: -1.00 -56.83 400.07 -2.41 -59.24 By element: Atomic # 1 Polarization: 23.51 SS G_CDS: 0.82 Total: 24.33 kcal Atomic # 6 Polarization: -29.87 SS G_CDS: 6.27 Total: -23.60 kcal Atomic # 7 Polarization: -94.58 SS G_CDS: -11.52 Total: -106.10 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.13 kcal Total: -56.83 -2.41 -59.24 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602800708.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.071 kcal (2) G-P(sol) polarization free energy of solvation -56.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds