Wall clock time and date at job start Tue Mar 31 2020 14:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46891 * 109.47164 * 2 1 4 4 C 1.46908 * 111.00172 * 291.39796 * 3 2 1 5 5 C 1.50699 * 109.46659 * 74.87442 * 4 3 2 6 6 H 1.07995 * 120.00844 * 4.51318 * 5 4 3 7 7 C 1.37877 * 119.99416 * 184.51628 * 5 4 3 8 8 N 1.31514 * 120.00142 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99994 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.46960 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.47232 * 119.99573 * 9 7 5 12 12 H 1.48500 * 109.47286 * 239.99945 * 9 7 5 13 13 C 1.46898 * 111.00215 * 167.44108 * 3 2 1 14 14 C 1.50696 * 109.47568 * 298.98531 * 13 3 2 15 15 C 1.38140 * 120.40462 * 267.51818 * 14 13 3 16 16 N 1.31897 * 120.82015 * 179.69579 * 15 14 13 17 17 C 1.31991 * 121.75467 * 0.02697 * 16 15 14 18 18 Cl 1.73589 * 119.63992 * 179.97438 * 17 16 15 19 19 C 1.38416 * 120.72524 * 359.97438 * 17 16 15 20 20 Cl 1.73599 * 120.44424 * 180.02562 * 19 17 16 21 21 C 1.38796 * 120.40701 * 87.23289 * 14 13 3 22 22 Cl 1.73606 * 120.79776 * 0.26272 * 21 14 13 23 23 H 1.08999 * 109.46969 * 67.61994 * 1 2 3 24 24 H 1.09005 * 109.46880 * 187.62244 * 1 2 3 25 25 H 1.08992 * 109.46882 * 307.61447 * 1 2 3 26 26 H 1.09000 * 109.47220 * 239.99889 * 2 1 3 27 27 H 1.09001 * 109.47164 * 120.00176 * 2 1 3 28 28 H 1.08999 * 109.46985 * 194.86931 * 4 3 2 29 29 H 1.08991 * 109.46678 * 314.87678 * 4 3 2 30 30 H 0.97004 * 119.99556 * 179.97438 * 8 7 5 31 31 H 1.08996 * 109.47170 * 178.98043 * 13 3 2 32 32 H 1.09007 * 109.46870 * 58.98743 * 13 3 2 33 33 H 1.08003 * 119.59026 * 359.72258 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7234 2.0481 -1.2770 5 6 0.2570 2.3903 -1.3368 6 1 -0.3758 2.2069 -0.4811 7 6 -0.2767 2.9377 -2.4841 8 7 0.4939 3.1616 -3.5261 9 14 -2.0946 3.3614 -2.5587 10 1 -2.7371 3.0145 -1.2657 11 1 -2.2539 4.8151 -2.8169 12 1 -2.7380 2.5908 -3.6530 13 6 3.4572 1.4351 0.2982 14 6 3.7069 0.8561 1.6669 15 6 3.7357 1.6760 2.7783 16 7 3.9476 1.1772 3.9807 17 6 4.1401 -0.1144 4.1730 18 17 4.4149 -0.7116 5.7796 19 6 4.1254 -0.9979 3.1076 20 17 4.3788 -2.6953 3.3688 21 6 3.9050 -0.5083 1.8270 22 17 3.8769 -1.5772 0.4593 23 1 -0.3633 0.3913 -0.9503 24 1 -0.3633 -1.0186 0.1363 25 1 -0.3633 0.6272 0.8140 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 2.3132 2.9612 -1.3575 29 1 1.9744 1.3795 -2.1003 30 1 0.1182 3.5464 -4.3334 31 1 3.7974 2.4703 0.2740 32 1 4.0032 0.8558 -0.4465 33 1 3.5822 2.7386 2.6611 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250030708.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:05 Heat of formation + Delta-G solvation = 13.205871 kcal Electronic energy + Delta-G solvation = -20490.621871 eV Core-core repulsion = 17049.879034 eV Total energy + Delta-G solvation = -3440.742837 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 322.010 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.84496 -38.96671 -38.13233 -37.91100 -37.73691 -34.89720 -33.72989 -32.85486 -31.22381 -29.27319 -26.69032 -25.31205 -24.17579 -23.57774 -21.59242 -19.03641 -18.71412 -18.50855 -17.14254 -17.12526 -16.49486 -15.93354 -15.83040 -15.44421 -15.31841 -14.79221 -14.35950 -14.07634 -13.94549 -13.31673 -13.27969 -13.08454 -12.86288 -12.85598 -12.71905 -12.52399 -12.49087 -12.38686 -12.14708 -12.02213 -11.95190 -11.36245 -11.08253 -11.02075 -10.65708 -10.47598 -10.10343 -9.04407 -8.12029 -6.15250 -0.61940 -0.54430 0.19662 0.58992 0.78948 1.43483 1.46516 1.57548 2.06532 2.45882 3.08795 3.13724 3.21386 3.37806 3.49364 3.61993 3.88296 4.17441 4.29918 4.50640 4.63975 4.72555 4.80705 4.98321 5.02647 5.15402 5.26476 5.39367 5.70778 5.77130 6.12979 6.24658 6.33150 6.60625 6.96882 7.49611 8.98698 Molecular weight = 322.01amu Principal moments of inertia in cm(-1) A = 0.022279 B = 0.003670 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.463637 B = 7628.043042 C = 8049.547496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.064 3.936 3 N -0.531 5.531 4 C 0.208 3.792 5 C -0.502 4.502 6 H 0.075 0.925 7 C 0.003 3.997 8 N -0.936 5.936 9 Si 0.954 3.046 10 H -0.263 1.263 11 H -0.283 1.283 12 H -0.285 1.285 13 C 0.089 3.911 14 C -0.096 4.096 15 C 0.161 3.839 16 N -0.467 5.467 17 C 0.183 3.817 18 Cl 0.006 6.994 19 C -0.079 4.079 20 Cl -0.009 7.009 21 C 0.016 3.984 22 Cl -0.013 7.013 23 H 0.063 0.937 24 H 0.054 0.946 25 H 0.048 0.952 26 H 0.018 0.982 27 H 0.068 0.932 28 H 0.012 0.988 29 H -0.030 1.030 30 H 0.260 0.740 31 H 0.106 0.894 32 H 0.046 0.954 33 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.401 -9.320 14.534 19.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.064 4.064 3 N -0.256 5.256 4 C 0.082 3.918 5 C -0.540 4.540 6 H 0.093 0.907 7 C -0.195 4.195 8 N -0.578 5.578 9 Si 0.780 3.220 10 H -0.186 1.186 11 H -0.209 1.209 12 H -0.211 1.211 13 C -0.039 4.039 14 C -0.099 4.099 15 C 0.003 3.997 16 N -0.178 5.178 17 C 0.017 3.983 18 Cl 0.035 6.965 19 C -0.111 4.111 20 Cl 0.020 6.980 21 C -0.020 4.020 22 Cl 0.016 6.984 23 H 0.082 0.918 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.036 0.964 27 H 0.086 0.914 28 H 0.030 0.970 29 H -0.013 1.013 30 H 0.069 0.931 31 H 0.124 0.876 32 H 0.064 0.936 33 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 9.205 -8.757 15.501 20.043 hybrid contribution -0.369 -0.983 -1.832 2.111 sum 8.836 -9.740 13.670 18.969 Atomic orbital electron populations 1.22025 0.95362 0.99962 1.03038 1.22212 0.96551 0.88769 0.98860 1.62270 1.11856 1.16192 1.35244 1.19458 0.96346 0.92309 0.83711 1.21647 0.94697 1.38649 0.99047 0.90690 1.25738 1.01919 0.96242 0.95565 1.70078 1.37103 1.46096 1.04491 0.85555 0.80595 0.77639 0.78218 1.18647 1.20894 1.21115 1.21080 0.90534 1.02176 0.90100 1.20942 0.98889 0.90896 0.99209 1.23149 0.90621 1.02112 0.83789 1.67349 1.12592 1.11632 1.26177 1.21539 0.99272 0.89414 0.88056 1.98429 1.93694 1.85725 1.18631 1.21452 1.08314 0.88989 0.92315 1.98409 1.94506 1.08651 1.96473 1.21148 1.00365 0.92072 0.88435 1.98435 1.95869 1.63455 1.40640 0.91824 0.92677 0.93297 0.96367 0.91406 0.96973 1.01250 0.93069 0.87609 0.93551 0.77651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.51 8.50 71.98 0.61 -4.90 16 2 C 0.06 2.31 4.11 86.31 0.35 2.67 16 3 N -0.53 -20.34 4.54 -905.39 -4.11 -24.45 16 4 C 0.21 10.01 4.74 85.55 0.41 10.41 16 5 C -0.50 -26.12 6.68 25.60 0.17 -25.95 16 6 H 0.08 3.83 5.81 -2.91 -0.02 3.82 16 7 C 0.00 0.15 5.46 84.65 0.46 0.61 16 8 N -0.94 -53.94 13.29 21.45 0.28 -53.66 16 9 Si 0.95 42.72 29.54 68.60 2.03 44.75 16 10 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 11 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 12 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 13 C 0.09 2.70 4.91 85.56 0.42 3.12 16 14 C -0.10 -2.48 4.86 -19.76 -0.10 -2.58 16 15 C 0.16 3.75 10.85 84.66 0.92 4.67 16 16 N -0.47 -11.55 10.34 -186.67 -1.93 -13.48 16 17 C 0.18 4.38 7.27 84.71 0.62 4.99 16 18 Cl 0.01 0.13 28.12 -2.72 -0.08 0.06 16 19 C -0.08 -1.90 6.35 22.46 0.14 -1.76 16 20 Cl -0.01 -0.20 27.12 -2.72 -0.07 -0.27 16 21 C 0.02 0.41 5.06 22.55 0.11 0.52 16 22 Cl -0.01 -0.35 23.37 -2.72 -0.06 -0.41 16 23 H 0.06 2.79 5.58 -2.39 -0.01 2.78 16 24 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 25 H 0.05 1.85 7.67 -2.39 -0.02 1.83 16 26 H 0.02 0.69 7.29 -2.39 -0.02 0.67 16 27 H 0.07 2.19 4.36 -2.39 -0.01 2.18 16 28 H 0.01 0.62 7.83 -2.39 -0.02 0.60 16 29 H -0.03 -1.63 7.85 -2.39 -0.02 -1.65 16 30 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 31 H 0.11 2.92 7.89 -2.39 -0.02 2.90 16 32 H 0.05 1.43 7.13 -2.38 -0.02 1.41 16 33 H 0.21 3.82 8.06 -2.91 -0.02 3.80 16 Total: -1.00 -57.75 312.34 1.33 -56.41 By element: Atomic # 1 Polarization: -1.91 SS G_CDS: 1.16 Total: -0.75 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: 4.12 Total: -8.19 kcal Atomic # 7 Polarization: -85.83 SS G_CDS: -5.76 Total: -91.59 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -0.21 Total: -0.63 kcal Total: -57.75 1.33 -56.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250030708.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.618 kcal (2) G-P(sol) polarization free energy of solvation -57.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds