Wall clock time and date at job start Tue Mar 31 2020 12:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36936 * 119.99923 * 2 1 4 4 H 1.08007 * 119.99946 * 199.46781 * 3 2 1 5 5 C 1.38983 * 120.00309 * 19.47289 * 3 2 1 6 6 N 1.31413 * 119.99796 * 18.88845 * 5 3 2 7 7 Si 1.86805 * 120.00072 * 198.89430 * 5 3 2 8 8 H 1.48495 * 109.46898 * 94.98633 * 7 5 3 9 9 H 1.48503 * 109.46800 * 214.98563 * 7 5 3 10 10 H 1.48502 * 109.46839 * 334.98555 * 7 5 3 11 11 C 1.34773 * 119.99648 * 180.02562 * 2 1 3 12 12 O 1.21670 * 119.99996 * 182.98271 * 11 2 1 13 13 C 1.47212 * 120.00391 * 2.98173 * 11 2 1 14 14 C 1.36295 * 122.56552 * 174.09808 * 13 11 2 15 15 S 1.71009 * 109.01284 * 179.97438 * 14 13 11 16 16 C 1.75970 * 90.64274 * 359.97438 * 15 14 13 17 17 C 1.47891 * 125.21862 * 180.02562 * 16 15 14 18 18 C 1.39537 * 120.12941 * 0.02562 * 17 16 15 19 19 C 1.37944 * 119.87259 * 180.02562 * 18 17 16 20 20 C 1.38469 * 120.12612 * 0.02562 * 19 18 17 21 21 Cl 1.73598 * 119.86989 * 179.97438 * 20 19 18 22 22 C 1.38466 * 120.25787 * 0.24655 * 20 19 18 23 23 C 1.37944 * 120.12892 * 359.49771 * 22 20 19 24 24 N 1.29796 * 109.56095 * 0.26636 * 16 15 14 25 25 H 1.08998 * 109.47005 * 264.23168 * 1 2 3 26 26 H 1.09002 * 109.46901 * 24.22811 * 1 2 3 27 27 H 1.09001 * 109.47315 * 144.22916 * 1 2 3 28 28 H 0.97001 * 119.99668 * 179.97438 * 6 5 3 29 29 H 1.08003 * 125.49599 * 359.97438 * 14 13 11 30 30 H 1.08002 * 120.06195 * 359.97438 * 18 17 16 31 31 H 1.08000 * 119.93406 * 179.97438 * 19 18 17 32 32 H 1.07999 * 119.93721 * 179.72634 * 22 20 19 33 33 H 1.08000 * 120.06643 * 180.27425 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1835 1.2126 -0.3117 5 6 1.5145 2.3551 0.4012 6 7 0.4146 2.2927 1.1178 7 14 2.2239 4.0154 -0.0782 8 1 1.5601 4.4987 -1.3154 9 1 1.9929 4.9881 1.0199 10 1 3.6828 3.8790 -0.3200 11 6 2.1388 -1.1672 -0.0005 12 8 3.3543 -1.1680 0.0543 13 6 1.4043 -2.4412 -0.0674 14 6 2.0324 -3.6447 -0.1892 15 16 0.8560 -4.8851 -0.2332 16 6 -0.4323 -3.6960 -0.0821 17 6 -1.8779 -4.0053 -0.0406 18 6 -2.3137 -5.3282 -0.1233 19 6 -3.6634 -5.6107 -0.0845 20 6 -4.5851 -4.5842 0.0356 21 17 -6.2820 -4.9472 0.0830 22 6 -4.1587 -3.2691 0.1124 23 6 -2.8114 -2.9750 0.0800 24 7 0.0806 -2.5054 -0.0179 25 1 -0.3633 -0.1033 1.0225 26 1 -0.3633 0.9372 -0.4217 27 1 -0.3634 -0.8338 -0.6007 28 1 -0.0285 3.1088 1.3981 29 1 3.1007 -3.7913 -0.2485 30 1 -1.5958 -6.1295 -0.2182 31 1 -4.0019 -6.6342 -0.1488 32 1 -4.8822 -2.4723 0.2015 33 1 -2.4797 -1.9492 0.1444 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060294667.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:45 Heat of formation + Delta-G solvation = 50.124809 kcal Electronic energy + Delta-G solvation = -21347.559050 eV Core-core repulsion = 17912.893694 eV Total energy + Delta-G solvation = -3434.665356 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 322.028 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.04045 -39.19476 -37.46846 -36.65501 -34.76127 -32.18226 -31.65925 -31.36934 -29.01505 -26.78270 -25.38156 -24.58324 -23.14563 -22.69819 -20.48620 -18.86318 -18.10140 -17.29473 -16.84503 -16.01774 -15.41308 -15.35723 -14.97774 -14.74683 -14.35870 -13.95093 -13.80630 -13.77330 -13.22019 -13.16116 -12.60589 -12.10880 -11.98704 -11.82209 -11.79910 -11.54763 -11.34034 -11.29889 -11.05481 -10.89045 -10.40409 -10.37411 -9.70863 -9.31656 -9.28529 -9.07190 -8.97013 -8.57540 -8.05878 -7.72859 -6.45541 -3.89595 0.20308 1.06945 1.29283 1.40441 1.83846 1.89626 2.60168 3.15098 3.20521 3.26451 3.51973 3.92966 4.08247 4.30697 4.57020 4.63466 4.86930 5.00623 5.10757 5.11989 5.25583 5.39277 5.63497 5.74132 5.77679 5.92502 6.00106 6.17597 6.33559 6.49562 6.84707 7.04198 7.32643 7.47193 7.78485 8.04685 8.41544 9.08507 9.32922 9.93235 10.56132 Molecular weight = 322.03amu Principal moments of inertia in cm(-1) A = 0.014899 B = 0.003545 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.917017 B = 7896.234956 C = 9703.344066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.408 5.408 3 C -0.304 4.304 4 H 0.105 0.895 5 C 0.033 3.967 6 N -0.858 5.858 7 Si 0.928 3.072 8 H -0.276 1.276 9 H -0.282 1.282 10 H -0.266 1.266 11 C 0.487 3.513 12 O -0.594 6.594 13 C 0.053 3.947 14 C -0.232 4.232 15 S 0.134 5.866 16 C 0.067 3.933 17 C -0.006 4.006 18 C -0.092 4.092 19 C -0.109 4.109 20 C -0.029 4.029 21 Cl -0.072 7.072 22 C -0.108 4.108 23 C -0.062 4.062 24 N -0.412 5.412 25 H 0.049 0.951 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.271 0.729 29 H 0.186 0.814 30 H 0.134 0.866 31 H 0.138 0.862 32 H 0.140 0.860 33 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.856 -15.253 -2.737 19.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.122 5.122 3 C -0.433 4.433 4 H 0.123 0.877 5 C -0.173 4.173 6 N -0.495 5.495 7 Si 0.754 3.246 8 H -0.201 1.201 9 H -0.207 1.207 10 H -0.190 1.190 11 C 0.273 3.727 12 O -0.481 6.481 13 C -0.082 4.082 14 C -0.374 4.374 15 S 0.391 5.609 16 C -0.208 4.208 17 C -0.009 4.009 18 C -0.113 4.113 19 C -0.128 4.128 20 C -0.056 4.056 21 Cl -0.043 7.043 22 C -0.127 4.127 23 C -0.084 4.084 24 N -0.127 5.127 25 H 0.068 0.932 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.203 0.797 30 H 0.152 0.848 31 H 0.156 0.844 32 H 0.158 0.842 33 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -11.783 -15.718 -2.655 19.823 hybrid contribution 0.551 1.644 0.026 1.734 sum -11.232 -14.074 -2.629 18.197 Atomic orbital electron populations 1.22034 0.79924 1.00887 1.01424 1.43585 1.06541 1.04345 1.57721 1.19848 0.98531 0.82956 1.41976 0.87737 1.25417 0.96529 1.00324 0.95001 1.70098 1.18926 1.29512 1.30994 0.85878 0.79756 0.80681 0.78277 1.20140 1.20749 1.19041 1.16808 0.86611 0.81617 0.87635 1.90629 1.12698 1.85994 1.58794 1.21035 0.87143 0.96460 1.03585 1.26595 1.05864 0.95004 1.09964 1.83312 0.97920 1.12274 1.67351 1.26001 0.97017 0.90785 1.06957 1.17917 0.87945 0.93667 1.01418 1.21080 0.95452 0.95190 0.99537 1.20860 0.91756 0.98961 1.01176 1.21073 0.84985 0.94862 1.04699 1.98374 1.14089 1.95059 1.96804 1.21073 0.96252 0.94894 1.00431 1.21392 0.91036 1.00411 0.95534 1.67490 1.10876 1.20874 1.13500 0.93233 0.91553 0.91372 0.91875 0.79718 0.84826 0.84438 0.84217 0.83216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.39 7.82 59.85 0.47 2.86 16 2 N -0.41 -10.98 3.02 -123.49 -0.37 -11.35 16 3 C -0.30 -8.60 9.29 -15.00 -0.14 -8.74 16 4 H 0.10 3.06 7.42 -52.48 -0.39 2.67 16 5 C 0.03 0.87 4.92 -17.45 -0.09 0.79 16 6 N -0.86 -22.80 10.91 55.50 0.61 -22.20 16 7 Si 0.93 20.37 29.59 -169.99 -5.03 15.34 16 8 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 9 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 10 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 11 C 0.49 12.75 7.60 -12.62 -0.10 12.65 16 12 O -0.59 -17.15 16.37 5.22 0.09 -17.06 16 13 C 0.05 1.13 6.50 -84.59 -0.55 0.58 16 14 C -0.23 -4.07 10.63 30.03 0.32 -3.75 16 15 S 0.13 1.75 22.11 -107.50 -2.38 -0.63 16 16 C 0.07 1.02 7.31 -14.46 -0.11 0.91 16 17 C -0.01 -0.07 5.87 -104.97 -0.62 -0.69 16 18 C -0.09 -0.91 9.60 -39.21 -0.38 -1.29 16 19 C -0.11 -0.98 9.81 -39.60 -0.39 -1.37 16 20 C -0.03 -0.28 6.32 -39.41 -0.25 -0.53 16 21 Cl -0.07 -0.65 28.95 -51.86 -1.50 -2.16 16 22 C -0.11 -1.13 9.81 -39.61 -0.39 -1.51 16 23 C -0.06 -0.77 9.67 -39.20 -0.38 -1.15 16 24 N -0.41 -7.79 6.18 -7.90 -0.05 -7.84 16 25 H 0.05 1.21 7.97 -51.93 -0.41 0.80 16 26 H 0.07 1.63 6.51 -51.93 -0.34 1.29 16 27 H 0.07 1.46 5.19 -51.93 -0.27 1.19 16 28 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 29 H 0.19 3.09 8.02 -52.48 -0.42 2.67 16 30 H 0.13 1.07 7.28 -52.49 -0.38 0.69 16 31 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 32 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 33 H 0.15 1.99 7.81 -52.49 -0.41 1.58 16 LS Contribution 318.22 15.07 4.80 4.80 Total: -1.00 -31.35 318.22 -9.03 -40.38 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -2.60 Total: 1.93 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -2.59 Total: -1.23 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: 0.18 Total: -41.38 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: 0.09 Total: -17.06 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.03 Total: 15.34 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -2.38 Total: -0.63 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.50 Total: -2.16 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.35 -9.03 -40.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060294667.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.508 kcal (2) G-P(sol) polarization free energy of solvation -31.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds