Wall clock time and date at job start Tue Mar 31 2020 12:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 120.00280 * 2 1 4 4 H 1.48502 * 109.47019 * 269.99687 * 3 2 1 5 5 H 1.48491 * 109.46978 * 29.99803 * 3 2 1 6 6 H 1.48499 * 109.46872 * 149.99720 * 3 2 1 7 7 C 1.37882 * 119.99579 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00448 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99930 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47352 * 180.02562 * 9 7 2 11 11 S 1.81394 * 109.47177 * 180.02562 * 10 9 7 12 12 O 1.42104 * 110.54511 * 68.37564 * 11 10 9 13 13 O 1.42105 * 110.54238 * 291.62412 * 11 10 9 14 14 O 1.52199 * 104.44899 * 179.97438 * 11 10 9 15 15 C 1.35999 * 114.00066 * 74.99840 * 14 11 10 16 16 C 1.38563 * 120.07024 * 90.00136 * 15 14 11 17 17 C 1.38241 * 119.99765 * 180.02562 * 16 15 14 18 18 C 1.38255 * 120.14765 * 359.97368 * 17 16 15 19 19 C 1.38247 * 120.14468 * 0.02562 * 18 17 16 20 20 C 1.38558 * 119.99917 * 359.97438 * 19 18 17 21 21 O 1.35995 * 120.07405 * 180.02562 * 20 19 18 22 22 C 1.42894 * 117.00081 * 359.96402 * 21 20 19 23 23 F 1.39905 * 109.47152 * 299.99948 * 22 21 20 24 24 F 1.39901 * 109.47207 * 59.99341 * 22 21 20 25 25 H 0.96997 * 119.99618 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46806 * 60.00175 * 9 7 2 27 27 H 1.09000 * 109.47352 * 300.00451 * 9 7 2 28 28 H 1.08994 * 109.47041 * 59.99891 * 10 9 7 29 29 H 1.09007 * 109.46836 * 300.00318 * 10 9 7 30 30 H 1.07998 * 120.00246 * 359.97438 * 16 15 14 31 31 H 1.08004 * 119.92819 * 179.97438 * 17 16 15 32 32 H 1.07998 * 119.92771 * 179.74871 * 18 17 16 33 33 H 1.07995 * 120.00081 * 179.97438 * 19 18 17 34 34 H 1.09001 * 109.47520 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.0214 -2.6367 0.0010 11 16 5.8354 -2.6368 0.0025 12 8 6.3331 -2.1469 1.2400 13 8 6.3351 -2.1460 -1.2340 14 8 6.2151 -4.1107 0.0029 15 6 6.0427 -4.7267 -1.1973 16 6 7.0765 -4.7522 -2.1195 17 6 6.8994 -5.3783 -3.3392 18 6 5.6922 -5.9804 -3.6418 19 6 4.6567 -5.9585 -2.7261 20 6 4.8276 -5.3327 -1.5018 21 8 3.8101 -5.3107 -0.5998 22 6 2.5914 -5.9521 -0.9807 23 9 2.0846 -5.3433 -2.1339 24 9 2.8371 -7.3053 -1.2375 25 1 -0.4849 0.8401 -0.0004 26 1 3.8744 -0.6802 0.8912 27 1 3.8752 -0.6806 -0.8888 28 1 3.6584 -3.1503 -0.8892 29 1 3.6577 -3.1508 0.8908 30 1 8.0204 -4.2823 -1.8857 31 1 7.7059 -5.3972 -4.0573 32 1 5.5564 -6.4650 -4.5973 33 1 3.7145 -6.4292 -2.9651 34 1 1.8653 -5.8620 -0.1728 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111340927.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:19 Heat of formation + Delta-G solvation = -243.790329 kcal Electronic energy + Delta-G solvation = -26356.386426 eV Core-core repulsion = 22017.577603 eV Total energy + Delta-G solvation = -4338.808824 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.056 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.41111 -48.38379 -42.43368 -40.11127 -38.51886 -38.31633 -37.30697 -35.92397 -33.51630 -31.81624 -31.28130 -28.02115 -27.22741 -24.82994 -23.92077 -23.22280 -21.71843 -20.28496 -19.89039 -19.38930 -19.01232 -18.76717 -18.56337 -18.08446 -17.14856 -16.88724 -16.44354 -16.36139 -15.88454 -15.79444 -15.29873 -15.08117 -15.04411 -14.84578 -14.71137 -14.48007 -14.08095 -13.89687 -13.76819 -13.53917 -13.42856 -13.36184 -13.12563 -13.07322 -12.92337 -12.81091 -12.27824 -12.18362 -11.96665 -11.70249 -11.27041 -10.82700 -10.18927 -9.71570 -8.34946 -6.39681 -1.07014 -0.03181 0.03848 1.01363 1.32156 1.33384 1.34757 1.44227 2.30539 2.37541 2.40717 2.46725 2.86743 2.99097 3.35987 3.38474 3.60520 3.67140 3.78236 3.88241 3.96904 4.10895 4.16781 4.29472 4.52892 4.74723 4.88512 5.03831 5.04219 5.13862 5.23244 5.28954 5.46677 5.76907 6.18700 6.64757 7.24003 8.80130 Molecular weight = 322.06amu Principal moments of inertia in cm(-1) A = 0.013285 B = 0.005763 C = 0.004583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.206515 B = 4857.174711 C = 6107.959157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.017 3.983 3 Si 0.919 3.081 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.251 1.251 7 C -0.521 4.521 8 H 0.055 0.945 9 C -0.013 4.013 10 C -0.596 4.596 11 S 2.592 3.408 12 O -0.967 6.967 13 O -0.972 6.972 14 O -0.655 6.655 15 C 0.014 3.986 16 C -0.073 4.073 17 C -0.119 4.119 18 C -0.052 4.052 19 C -0.189 4.189 20 C 0.086 3.914 21 O -0.329 6.329 22 C 0.407 3.593 23 F -0.202 7.202 24 F -0.196 7.196 25 H 0.269 0.731 26 H 0.034 0.966 27 H 0.033 0.967 28 H 0.134 0.866 29 H 0.146 0.854 30 H 0.158 0.842 31 H 0.183 0.817 32 H 0.181 0.819 33 H 0.155 0.845 34 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.152 -16.247 -7.797 21.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.181 4.181 3 Si 0.742 3.258 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.174 1.174 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.052 4.052 10 C -0.725 4.725 11 S 2.692 3.308 12 O -0.965 6.965 13 O -0.971 6.971 14 O -0.614 6.614 15 C -0.029 4.029 16 C -0.093 4.093 17 C -0.137 4.137 18 C -0.071 4.071 19 C -0.207 4.207 20 C 0.040 3.960 21 O -0.247 6.247 22 C 0.319 3.681 23 F -0.184 7.184 24 F -0.178 7.178 25 H 0.078 0.922 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.153 0.847 29 H 0.164 0.836 30 H 0.176 0.824 31 H 0.201 0.799 32 H 0.198 0.802 33 H 0.173 0.827 34 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 11.764 -15.926 -7.417 21.143 hybrid contribution -0.983 0.738 0.297 1.265 sum 10.780 -15.188 -7.120 19.939 Atomic orbital electron populations 1.69988 1.07700 1.28278 1.51686 1.25783 0.95591 1.02690 0.94070 0.86112 0.80032 0.79813 0.79843 1.18588 1.19913 1.17425 1.21086 0.89716 0.94025 1.51175 0.92718 1.19376 0.97772 0.90017 0.97990 1.30456 1.22514 1.06902 1.12674 1.05522 0.78584 0.73050 0.73619 1.93543 1.79242 1.77539 1.46217 1.93548 1.78392 1.79021 1.46121 1.85730 1.86842 1.47496 1.41296 1.17808 0.94907 1.06326 0.83836 1.21602 0.97819 0.96976 0.92892 1.21598 0.99600 0.96931 0.95554 1.21733 0.90932 0.94731 0.99692 1.21803 1.03422 1.03180 0.92305 1.19278 0.86888 0.98793 0.91047 1.86775 1.21922 1.73498 1.42530 1.24099 0.84766 0.72042 0.87226 1.93115 1.87103 1.83212 1.54977 1.93083 1.94573 1.34929 1.95214 0.92165 0.94776 0.94924 0.84739 0.83630 0.82406 0.79945 0.80161 0.82743 0.76098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.67 13.96 21.45 0.30 -56.37 16 2 C 0.02 1.00 5.47 84.66 0.46 1.46 16 3 Si 0.92 43.56 27.47 68.60 1.88 45.44 16 4 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.25 -11.34 6.54 99.48 0.65 -10.69 16 7 C -0.52 -29.04 9.66 25.60 0.25 -28.79 16 8 H 0.05 3.20 7.99 -2.91 -0.02 3.18 16 9 C -0.01 -0.61 4.05 29.85 0.12 -0.49 16 10 C -0.60 -23.15 4.46 71.98 0.32 -22.82 16 11 S 2.59 97.06 5.17 -56.49 -0.29 96.77 16 12 O -0.97 -41.39 18.09 -118.57 -2.15 -43.54 16 13 O -0.97 -37.80 16.27 -118.57 -1.93 -39.73 16 14 O -0.65 -21.62 9.84 -60.56 -0.60 -22.22 16 15 C 0.01 0.40 4.81 22.57 0.11 0.51 16 16 C -0.07 -1.68 9.05 22.35 0.20 -1.47 16 17 C -0.12 -1.84 10.04 22.27 0.22 -1.61 16 18 C -0.05 -0.79 10.04 22.28 0.22 -0.56 16 19 C -0.19 -4.00 8.26 22.35 0.18 -3.81 16 20 C 0.09 2.33 5.63 22.57 0.13 2.45 16 21 O -0.33 -8.85 7.43 -79.63 -0.59 -9.44 16 22 C 0.41 8.55 5.98 113.37 0.68 9.22 16 23 F -0.20 -5.15 15.59 44.97 0.70 -4.45 16 24 F -0.20 -3.87 15.58 44.97 0.70 -3.16 16 25 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 26 H 0.03 1.61 7.20 -2.39 -0.02 1.59 16 27 H 0.03 1.51 7.57 -2.39 -0.02 1.49 16 28 H 0.13 4.95 6.01 -2.39 -0.01 4.94 16 29 H 0.15 5.18 8.10 -2.39 -0.02 5.16 16 30 H 0.16 3.18 8.06 -2.91 -0.02 3.15 16 31 H 0.18 1.30 8.06 -2.91 -0.02 1.28 16 32 H 0.18 1.22 8.06 -2.91 -0.02 1.20 16 33 H 0.16 2.97 5.10 -2.91 -0.01 2.95 16 34 H 0.22 2.99 8.14 -2.39 -0.02 2.97 16 Total: -1.00 -75.99 310.17 2.03 -73.96 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: 1.10 Total: 8.66 kcal Atomic # 6 Polarization: -48.82 SS G_CDS: 2.90 Total: -45.92 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: 0.30 Total: -56.37 kcal Atomic # 8 Polarization: -109.67 SS G_CDS: -5.26 Total: -114.93 kcal Atomic # 9 Polarization: -9.01 SS G_CDS: 1.40 Total: -7.61 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 1.88 Total: 45.44 kcal Atomic # 16 Polarization: 97.06 SS G_CDS: -0.29 Total: 96.77 kcal Total: -75.99 2.03 -73.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111340927.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.833 kcal (2) G-P(sol) polarization free energy of solvation -75.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -245.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -243.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds