Wall clock time and date at job start Tue Mar 31 2020 13:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47113 * 2 1 4 4 C 1.50704 * 109.47264 * 120.00073 * 2 1 3 5 5 H 1.08001 * 119.99599 * 120.00134 * 4 2 1 6 6 C 1.37874 * 119.99995 * 300.00189 * 4 2 1 7 7 N 1.31518 * 119.99550 * 180.02562 * 6 4 2 8 8 Si 1.86793 * 120.00043 * 359.97438 * 6 4 2 9 9 H 1.48502 * 109.47140 * 90.00147 * 8 6 4 10 10 H 1.48504 * 109.47166 * 210.00225 * 8 6 4 11 11 H 1.48505 * 109.47258 * 330.00346 * 8 6 4 12 12 N 1.46903 * 109.46895 * 240.00263 * 2 1 3 13 13 C 1.46895 * 110.99968 * 306.04167 * 12 2 1 14 14 C 1.46894 * 111.00021 * 70.00216 * 12 2 1 15 15 C 1.50703 * 109.47104 * 164.79000 * 14 12 2 16 16 C 1.38369 * 119.84971 * 105.84373 * 15 14 12 17 17 C 1.37932 * 120.15893 * 180.28046 * 16 15 14 18 18 C 1.39649 * 119.87013 * 359.97438 * 17 16 15 19 19 C 1.43201 * 120.14790 * 179.97438 * 18 17 16 20 20 N 8.87963 * 116.54634 * 252.72182 * 2 1 3 21 21 C 1.39602 * 119.70687 * 0.02562 * 18 17 16 22 22 C 1.38056 * 119.83762 * 0.02562 * 21 18 17 23 23 Br 1.89101 * 119.93817 * 179.97438 * 22 21 18 24 24 H 1.08991 * 109.47463 * 59.99852 * 1 2 3 25 25 H 1.08998 * 109.47113 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46657 * 299.99798 * 1 2 3 27 27 H 0.97004 * 119.99175 * 179.97438 * 7 6 4 28 28 H 1.09002 * 109.47068 * 189.63526 * 13 12 2 29 29 H 1.09001 * 109.47421 * 309.63854 * 13 12 2 30 30 H 1.09011 * 109.47100 * 69.63786 * 13 12 2 31 31 H 1.08998 * 109.47251 * 44.78803 * 14 12 2 32 32 H 1.09002 * 109.46735 * 284.78612 * 14 12 2 33 33 H 1.08000 * 119.92139 * 0.27255 * 16 15 14 34 34 H 1.08005 * 120.06486 * 179.97438 * 17 16 15 35 35 H 1.08001 * 120.08422 * 180.02562 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1382 -0.8592 3.5565 8 14 0.6259 1.2797 2.6542 9 1 -0.8020 0.8743 2.6994 10 1 0.9772 1.9952 3.9071 11 1 0.8491 2.1772 1.4923 12 7 2.0196 -0.6925 -1.1995 13 6 1.4343 -2.0354 -1.3078 14 6 1.7529 0.0973 -2.4090 15 6 2.5770 -0.4391 -3.5511 16 6 1.9693 -1.1760 -4.5522 17 6 2.7185 -1.6749 -5.5974 18 6 4.0933 -1.4345 -5.6446 19 6 4.8769 -1.9501 -6.7267 20 7 5.4985 -2.3593 -7.5850 21 6 4.7007 -0.6904 -4.6316 22 6 3.9395 -0.1977 -3.5905 23 35 4.7594 0.8101 -2.2164 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.9041 -0.5275 4.4375 28 1 1.9373 -2.5881 -2.1014 29 1 1.5585 -2.5633 -0.3623 30 1 0.3726 -1.9514 -1.5403 31 1 2.0171 1.1392 -2.2282 32 1 0.6946 0.0293 -2.6613 33 1 0.9060 -1.3611 -4.5151 34 1 2.2427 -2.2502 -6.3779 35 1 5.7634 -0.5005 -4.6622 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181147035.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:24 Heat of formation + Delta-G solvation = 75.050439 kcal Electronic energy + Delta-G solvation = -18830.179048 eV Core-core repulsion = 15875.247087 eV Total energy + Delta-G solvation = -2954.931962 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 322.038 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.89682 -37.56576 -36.49376 -33.23302 -32.38101 -31.78070 -29.68720 -29.13344 -27.13846 -25.28719 -24.39218 -22.78448 -21.86615 -19.35095 -18.93467 -16.69498 -16.16766 -15.91546 -15.11350 -14.64366 -14.53176 -14.17601 -14.03583 -13.68065 -13.38494 -13.12892 -12.97271 -12.69206 -12.59073 -12.24891 -11.84917 -11.51889 -11.42828 -11.22332 -11.13013 -10.87212 -10.67542 -10.34339 -10.05830 -9.81923 -9.55052 -9.12785 -9.04507 -8.69536 -8.58274 -7.42407 -6.06806 -4.04396 0.51346 0.96699 1.77543 2.47828 2.68300 3.23695 3.33865 3.37093 3.57401 3.65333 4.38324 4.52249 4.61316 4.77186 4.91568 5.11610 5.24590 5.30681 5.49362 5.60007 5.82131 5.88244 5.97100 6.04154 6.11384 6.20236 6.22460 6.28477 6.44757 6.51367 6.65970 6.83974 7.13267 7.25422 7.60793 7.85973 8.00027 8.63733 9.02376 9.55224 11.06344 Molecular weight = 322.04amu Principal moments of inertia in cm(-1) A = 0.021941 B = 0.004583 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.855881 B = 6107.413931 C = 6759.034286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.184 3.816 3 H 0.041 0.959 4 C -0.496 4.496 5 H 0.083 0.917 6 C 0.070 3.930 7 N -0.899 5.899 8 Si 0.882 3.118 9 H -0.281 1.281 10 H -0.297 1.297 11 H -0.268 1.268 12 N -0.507 5.507 13 C 0.030 3.970 14 C 0.073 3.927 15 C -0.007 4.007 16 C -0.113 4.113 17 C -0.059 4.059 18 C -0.037 4.037 19 C 0.261 3.739 20 N -0.422 5.422 21 C -0.046 4.046 22 C -0.074 4.074 23 Br -0.014 7.014 24 H 0.027 0.973 25 H 0.057 0.943 26 H 0.045 0.955 27 H 0.263 0.737 28 H 0.046 0.954 29 H 0.083 0.917 30 H 0.016 0.984 31 H 0.089 0.911 32 H 0.044 0.956 33 H 0.139 0.861 34 H 0.135 0.865 35 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.382 2.777 -16.204 16.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.077 3.923 3 H 0.059 0.941 4 C -0.535 4.535 5 H 0.101 0.899 6 C -0.131 4.131 7 N -0.538 5.538 8 Si 0.713 3.287 9 H -0.209 1.209 10 H -0.225 1.225 11 H -0.193 1.193 12 N -0.230 5.230 13 C -0.118 4.118 14 C -0.055 4.055 15 C -0.010 4.010 16 C -0.132 4.132 17 C -0.080 4.080 18 C -0.041 4.041 19 C -0.054 4.054 20 N -0.097 5.097 21 C -0.069 4.069 22 C -0.154 4.154 23 Br 0.073 6.927 24 H 0.046 0.954 25 H 0.076 0.924 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.102 0.898 30 H 0.034 0.966 31 H 0.107 0.893 32 H 0.062 0.938 33 H 0.156 0.844 34 H 0.153 0.847 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.184 2.478 -16.742 17.064 hybrid contribution -1.994 0.771 0.224 2.149 sum 0.191 3.249 -16.518 16.835 Atomic orbital electron populations 1.22860 1.01761 1.01090 0.98899 1.19796 0.88506 0.95358 0.88621 0.94105 1.20886 1.31291 1.13716 0.87564 0.89898 1.24893 0.95918 0.96459 0.95878 1.69879 1.45760 1.40310 0.97850 0.86950 0.80570 0.84149 0.76993 1.20876 1.22507 1.19299 1.62169 1.58424 1.02084 1.00280 1.22350 0.95491 0.91360 1.02608 1.21292 0.95900 0.98844 0.89495 1.20220 0.92479 0.93318 0.94987 1.21035 1.00655 0.97983 0.93537 1.21193 0.91495 0.97267 0.98043 1.15819 0.92221 1.03573 0.92520 1.25615 0.93371 0.93429 0.92965 1.81254 1.08574 1.09226 1.10686 1.21103 1.00152 0.94398 0.91212 1.21647 0.94780 1.03203 0.95795 1.96851 1.79440 1.68786 1.47634 0.95423 0.92446 0.93693 0.92691 0.93527 0.89797 0.96576 0.89302 0.93827 0.84369 0.84685 0.84261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.73 7.95 37.16 0.30 -3.44 16 2 C 0.18 3.97 1.89 -68.86 -0.13 3.84 16 3 H 0.04 0.93 6.93 -51.93 -0.36 0.57 16 4 C -0.50 -13.02 8.41 -34.44 -0.29 -13.31 16 5 H 0.08 2.41 7.42 -52.49 -0.39 2.02 16 6 C 0.07 1.93 5.45 -17.82 -0.10 1.83 16 7 N -0.90 -26.63 13.96 55.43 0.77 -25.85 16 8 Si 0.88 21.07 24.37 -169.99 -4.14 16.92 16 9 H -0.28 -6.59 6.87 56.52 0.39 -6.20 16 10 H -0.30 -7.22 7.11 56.52 0.40 -6.82 16 11 H -0.27 -6.07 6.53 56.52 0.37 -5.70 16 12 N -0.51 -9.14 4.32 -237.73 -1.03 -10.17 16 13 C 0.03 0.51 8.34 60.06 0.50 1.01 16 14 C 0.07 1.05 3.80 -4.98 -0.02 1.03 16 15 C -0.01 -0.08 4.65 -104.50 -0.49 -0.57 16 16 C -0.11 -1.09 9.43 -39.65 -0.37 -1.46 16 17 C -0.06 -0.51 9.76 -39.17 -0.38 -0.89 16 18 C -0.04 -0.36 5.73 -106.93 -0.61 -0.98 16 19 C 0.26 2.90 15.33 -22.47 -0.34 2.55 16 20 N -0.42 -5.54 18.54 41.84 0.78 -4.77 16 21 C -0.05 -0.49 9.49 -39.14 -0.37 -0.86 16 22 C -0.07 -0.92 6.21 -39.58 -0.25 -1.17 16 23 Br -0.01 -0.20 31.85 -68.01 -2.17 -2.36 16 24 H 0.03 0.47 7.04 -51.93 -0.37 0.10 16 25 H 0.06 1.12 6.54 -51.93 -0.34 0.78 16 26 H 0.04 0.96 3.27 -51.93 -0.17 0.79 16 27 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 28 H 0.05 0.70 7.44 -51.93 -0.39 0.31 16 29 H 0.08 1.64 6.65 -51.93 -0.35 1.30 16 30 H 0.02 0.25 6.69 -51.92 -0.35 -0.10 16 31 H 0.09 1.32 7.12 -51.93 -0.37 0.95 16 32 H 0.04 0.58 6.96 -51.93 -0.36 0.21 16 33 H 0.14 1.08 7.99 -52.49 -0.42 0.66 16 34 H 0.14 0.85 8.06 -52.48 -0.42 0.43 16 35 H 0.14 1.31 8.06 -52.49 -0.42 0.88 16 LS Contribution 308.47 15.07 4.65 4.65 Total: -1.00 -29.21 308.47 -7.57 -36.78 By element: Atomic # 1 Polarization: 1.09 SS G_CDS: -3.88 Total: -2.79 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: -2.56 Total: -12.42 kcal Atomic # 7 Polarization: -41.31 SS G_CDS: 0.52 Total: -40.79 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.14 Total: 16.92 kcal Atomic # 35 Polarization: -0.20 SS G_CDS: -2.17 Total: -2.36 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.21 -7.57 -36.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181147035.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.833 kcal (2) G-P(sol) polarization free energy of solvation -29.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds