Wall clock time and date at job start Tue Mar 31 2020 13:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47113 * 2 1 4 4 C 1.50704 * 109.47264 * 120.00073 * 2 1 3 5 5 H 1.08001 * 119.99599 * 120.00134 * 4 2 1 6 6 C 1.37874 * 119.99995 * 300.00189 * 4 2 1 7 7 N 1.31518 * 119.99550 * 180.02562 * 6 4 2 8 8 Si 1.86793 * 120.00043 * 359.97438 * 6 4 2 9 9 H 1.48502 * 109.47140 * 90.00147 * 8 6 4 10 10 H 1.48504 * 109.47166 * 210.00225 * 8 6 4 11 11 H 1.48505 * 109.47258 * 330.00346 * 8 6 4 12 12 N 1.46903 * 109.46895 * 240.00263 * 2 1 3 13 13 C 1.46895 * 110.99968 * 306.04167 * 12 2 1 14 14 C 1.46894 * 111.00021 * 70.00216 * 12 2 1 15 15 C 1.50703 * 109.47104 * 164.79000 * 14 12 2 16 16 C 1.38369 * 119.84971 * 105.84373 * 15 14 12 17 17 C 1.37932 * 120.15893 * 180.28046 * 16 15 14 18 18 C 1.39649 * 119.87013 * 359.97438 * 17 16 15 19 19 C 1.43201 * 120.14790 * 179.97438 * 18 17 16 20 20 N 8.87963 * 116.54634 * 252.72182 * 2 1 3 21 21 C 1.39602 * 119.70687 * 0.02562 * 18 17 16 22 22 C 1.38056 * 119.83762 * 0.02562 * 21 18 17 23 23 Br 1.89101 * 119.93817 * 179.97438 * 22 21 18 24 24 H 1.08991 * 109.47463 * 59.99852 * 1 2 3 25 25 H 1.08998 * 109.47113 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46657 * 299.99798 * 1 2 3 27 27 H 0.97004 * 119.99175 * 179.97438 * 7 6 4 28 28 H 1.09002 * 109.47068 * 189.63526 * 13 12 2 29 29 H 1.09001 * 109.47421 * 309.63854 * 13 12 2 30 30 H 1.09011 * 109.47100 * 69.63786 * 13 12 2 31 31 H 1.08998 * 109.47251 * 44.78803 * 14 12 2 32 32 H 1.09002 * 109.46735 * 284.78612 * 14 12 2 33 33 H 1.08000 * 119.92139 * 0.27255 * 16 15 14 34 34 H 1.08005 * 120.06486 * 179.97438 * 17 16 15 35 35 H 1.08001 * 120.08422 * 180.02562 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1382 -0.8592 3.5565 8 14 0.6259 1.2797 2.6542 9 1 -0.8020 0.8743 2.6994 10 1 0.9772 1.9952 3.9071 11 1 0.8491 2.1772 1.4923 12 7 2.0196 -0.6925 -1.1995 13 6 1.4343 -2.0354 -1.3078 14 6 1.7529 0.0973 -2.4090 15 6 2.5770 -0.4391 -3.5511 16 6 1.9693 -1.1760 -4.5522 17 6 2.7185 -1.6749 -5.5974 18 6 4.0933 -1.4345 -5.6446 19 6 4.8769 -1.9501 -6.7267 20 7 5.4985 -2.3593 -7.5850 21 6 4.7007 -0.6904 -4.6316 22 6 3.9395 -0.1977 -3.5905 23 35 4.7594 0.8101 -2.2164 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.9041 -0.5275 4.4375 28 1 1.9373 -2.5881 -2.1014 29 1 1.5585 -2.5633 -0.3623 30 1 0.3726 -1.9514 -1.5403 31 1 2.0171 1.1392 -2.2282 32 1 0.6946 0.0293 -2.6613 33 1 0.9060 -1.3611 -4.5151 34 1 2.2427 -2.2502 -6.3779 35 1 5.7634 -0.5005 -4.6622 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181147035.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:23 Heat of formation + Delta-G solvation = 57.189256 kcal Electronic energy + Delta-G solvation = -18830.953567 eV Core-core repulsion = 15875.247087 eV Total energy + Delta-G solvation = -2955.706481 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 322.038 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.79660 -38.89574 -37.51168 -34.83835 -33.52119 -32.98822 -31.10789 -30.15830 -28.29536 -27.10041 -25.74172 -23.62139 -23.02383 -20.92875 -19.77211 -18.60104 -17.31486 -17.00639 -16.44434 -16.12955 -15.44794 -15.42995 -15.15673 -14.70944 -14.57940 -14.41650 -14.12692 -13.95770 -13.89188 -13.63441 -13.26253 -12.94737 -12.81034 -12.53924 -12.33211 -12.16757 -11.94782 -11.74921 -11.63343 -11.38209 -10.99307 -10.86729 -10.67474 -9.92840 -9.61931 -8.79434 -8.18726 -6.19137 -0.33792 0.16742 0.82911 1.34285 1.40835 1.49707 1.59888 1.80961 2.38759 2.72787 2.79129 3.16811 3.43391 3.76681 3.85972 4.02447 4.26324 4.43782 4.49929 4.54333 4.61907 4.69467 4.74407 4.81384 4.89259 4.95789 5.04603 5.11204 5.19269 5.36429 5.38494 5.54037 5.66370 5.74373 6.13819 6.38895 6.52449 6.79437 6.88499 7.44870 8.98347 Molecular weight = 322.04amu Principal moments of inertia in cm(-1) A = 0.021941 B = 0.004583 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.855881 B = 6107.413931 C = 6759.034286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.190 3.810 3 H 0.033 0.967 4 C -0.487 4.487 5 H 0.039 0.961 6 C 0.010 3.990 7 N -0.953 5.953 8 Si 0.943 3.057 9 H -0.270 1.270 10 H -0.307 1.307 11 H -0.246 1.246 12 N -0.522 5.522 13 C 0.038 3.962 14 C 0.075 3.925 15 C -0.020 4.020 16 C -0.103 4.103 17 C -0.041 4.041 18 C -0.034 4.034 19 C 0.284 3.716 20 N -0.458 5.458 21 C -0.046 4.046 22 C -0.086 4.086 23 Br -0.044 7.044 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.031 0.969 27 H 0.262 0.738 28 H 0.067 0.933 29 H 0.044 0.956 30 H 0.036 0.964 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.166 0.834 34 H 0.168 0.832 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.669 3.288 -19.005 19.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.082 3.918 3 H 0.051 0.949 4 C -0.526 4.526 5 H 0.057 0.943 6 C -0.186 4.186 7 N -0.595 5.595 8 Si 0.772 3.228 9 H -0.196 1.196 10 H -0.235 1.235 11 H -0.170 1.170 12 N -0.245 5.245 13 C -0.110 4.110 14 C -0.052 4.052 15 C -0.023 4.023 16 C -0.122 4.122 17 C -0.062 4.062 18 C -0.039 4.039 19 C -0.031 4.031 20 N -0.134 5.134 21 C -0.068 4.068 22 C -0.167 4.167 23 Br 0.042 6.958 24 H 0.083 0.917 25 H 0.076 0.924 26 H 0.049 0.951 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.100 0.900 32 H 0.084 0.916 33 H 0.184 0.816 34 H 0.185 0.815 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 0.129 2.989 -19.589 19.816 hybrid contribution -1.285 0.506 0.973 1.689 sum -1.156 3.495 -18.616 18.976 Atomic orbital electron populations 1.22729 0.99901 1.01513 0.99969 1.19516 0.89743 0.94303 0.88233 0.94906 1.21158 1.29501 1.12110 0.89795 0.94294 1.25704 0.97667 0.99678 0.95576 1.70050 1.48333 1.42656 0.98439 0.85951 0.79119 0.80643 0.77125 1.19646 1.23496 1.16952 1.61973 1.59094 1.02714 1.00737 1.22242 0.96931 0.90607 1.01242 1.21282 0.97590 0.97995 0.88366 1.20140 0.92075 0.94722 0.95371 1.21281 1.01960 0.96473 0.92448 1.21527 0.90577 0.95962 0.98106 1.15840 0.92843 1.03400 0.91787 1.25647 0.92572 0.92440 0.92434 1.81290 1.09601 1.10555 1.11973 1.21143 1.00557 0.94222 0.90922 1.21618 0.95211 1.04116 0.95707 1.96829 1.80066 1.69730 1.49179 0.91720 0.92427 0.95054 0.92949 0.91415 0.93700 0.94604 0.90047 0.91583 0.81621 0.81460 0.83617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.75 7.95 71.98 0.57 -6.18 16 2 C 0.19 7.98 1.89 44.17 0.08 8.06 16 3 H 0.03 1.45 6.93 -2.39 -0.02 1.43 16 4 C -0.49 -26.19 8.41 25.60 0.22 -25.98 16 5 H 0.04 2.38 7.42 -2.91 -0.02 2.36 16 6 C 0.01 0.56 5.45 84.65 0.46 1.02 16 7 N -0.95 -58.68 13.96 21.45 0.30 -58.38 16 8 Si 0.94 43.48 24.37 68.60 1.67 45.15 16 9 H -0.27 -11.85 6.87 99.48 0.68 -11.17 16 10 H -0.31 -14.47 7.11 99.48 0.71 -13.76 16 11 H -0.25 -10.32 6.53 99.48 0.65 -9.67 16 12 N -0.52 -18.06 4.32 -906.04 -3.91 -21.97 16 13 C 0.04 1.21 8.34 127.69 1.07 2.27 16 14 C 0.08 1.94 3.80 85.56 0.33 2.27 16 15 C -0.02 -0.43 4.65 -19.79 -0.09 -0.52 16 16 C -0.10 -1.48 9.43 22.23 0.21 -1.27 16 17 C -0.04 -0.52 9.76 22.54 0.22 -0.30 16 18 C -0.03 -0.57 5.73 -21.36 -0.12 -0.69 16 19 C 0.28 5.58 15.33 88.33 1.35 6.93 16 20 N -0.46 -11.23 18.54 19.00 0.35 -10.88 16 21 C -0.05 -0.89 9.49 22.56 0.21 -0.68 16 22 C -0.09 -2.01 6.21 22.27 0.14 -1.87 16 23 Br -0.04 -1.26 31.85 -20.37 -0.65 -1.91 16 24 H 0.06 1.91 7.04 -2.39 -0.02 1.89 16 25 H 0.06 2.11 6.54 -2.39 -0.02 2.09 16 26 H 0.03 1.24 3.27 -2.38 -0.01 1.24 16 27 H 0.26 15.24 8.31 -92.70 -0.77 14.47 16 28 H 0.07 1.85 7.44 -2.39 -0.02 1.83 16 29 H 0.04 1.77 6.65 -2.39 -0.02 1.76 16 30 H 0.04 0.99 6.69 -2.38 -0.02 0.97 16 31 H 0.08 2.23 7.12 -2.39 -0.02 2.22 16 32 H 0.07 1.42 6.96 -2.39 -0.02 1.40 16 33 H 0.17 1.55 7.99 -2.91 -0.02 1.53 16 34 H 0.17 1.11 8.06 -2.91 -0.02 1.09 16 35 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -66.15 308.47 3.44 -62.71 By element: Atomic # 1 Polarization: 1.16 SS G_CDS: 1.04 Total: 2.20 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: 4.64 Total: -16.91 kcal Atomic # 7 Polarization: -87.97 SS G_CDS: -3.26 Total: -91.23 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 1.67 Total: 45.15 kcal Atomic # 35 Polarization: -1.26 SS G_CDS: -0.65 Total: -1.91 kcal Total: -66.15 3.44 -62.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181147035.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.899 kcal (2) G-P(sol) polarization free energy of solvation -66.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds