Wall clock time and date at job start Tue Mar 31 2020 12:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86803 * 119.99488 * 2 1 4 4 H 1.48502 * 109.47179 * 240.00075 * 3 2 1 5 5 H 1.48496 * 109.47233 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47378 * 119.99902 * 3 2 1 7 7 C 1.39931 * 120.00455 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99892 * 197.87190 * 7 2 1 9 9 C 1.41401 * 119.99872 * 17.87569 * 7 2 1 10 10 C 1.40767 * 120.21501 * 204.40515 * 9 7 2 11 11 C 1.37628 * 119.85929 * 180.02562 * 10 9 7 12 12 C 1.38570 * 120.30070 * 359.72648 * 11 10 9 13 13 C 1.39116 * 120.44422 * 0.55084 * 12 11 10 14 14 O 1.35893 * 119.93598 * 179.72492 * 13 12 11 15 15 S 1.52201 * 114.00065 * 269.73008 * 14 13 12 16 16 O 1.42093 * 106.40570 * 188.54066 * 15 14 13 17 17 O 1.42108 * 106.39857 * 321.45621 * 15 14 13 18 18 C 1.76197 * 107.22222 * 74.99236 * 15 14 13 19 19 C 1.38263 * 119.99033 * 269.73341 * 18 15 14 20 20 C 1.38223 * 120.05124 * 179.72066 * 19 18 15 21 21 C 1.38227 * 120.02696 * 0.55007 * 20 19 18 22 22 C 1.38442 * 119.97081 * 359.72345 * 21 20 19 23 23 F 1.35094 * 120.02807 * 180.02562 * 22 21 20 24 24 C 1.38186 * 119.98293 * 89.99802 * 18 15 14 25 25 C 1.38137 * 120.13299 * 359.44982 * 13 12 11 26 26 H 0.96988 * 120.00342 * 0.02562 * 1 2 3 27 27 H 1.08008 * 120.07286 * 0.02562 * 10 9 7 28 28 H 1.07996 * 119.85053 * 180.02562 * 11 10 9 29 29 H 1.08001 * 119.78163 * 180.29713 * 12 11 10 30 30 H 1.07998 * 119.97819 * 359.97438 * 19 18 15 31 31 H 1.08003 * 119.98913 * 180.26941 * 20 19 18 32 32 H 1.07996 * 120.01568 * 179.74864 * 21 20 19 33 33 H 1.07994 * 120.00914 * 359.97438 * 24 18 15 34 34 H 1.07997 * 120.15663 * 180.25196 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0959 1.6966 -1.2125 5 1 1.2771 2.7465 -0.0006 6 1 3.0959 1.6967 1.2125 7 6 2.0081 -1.2118 0.0005 8 1 3.0490 -1.2341 0.2876 9 6 1.3523 -2.4070 -0.3748 10 6 1.8264 -3.6498 0.0858 11 6 1.1828 -4.8086 -0.2845 12 6 0.0668 -4.7572 -1.1043 13 6 -0.4091 -3.5363 -1.5714 14 8 -1.5011 -3.4983 -2.3792 15 16 -1.1761 -3.5811 -3.8638 16 8 -2.3911 -3.3272 -4.5554 17 8 0.0043 -2.8144 -4.0594 18 6 -0.7459 -5.2541 -4.2112 19 6 0.5713 -5.6632 -4.1152 20 6 0.9093 -6.9767 -4.3818 21 6 -0.0677 -7.8801 -4.7558 22 6 -1.3862 -7.4702 -4.8577 23 9 -2.3421 -8.3524 -5.2226 24 6 -1.7245 -6.1554 -4.5847 25 6 0.2228 -2.3620 -1.2110 26 1 -0.4850 0.8399 -0.0004 27 1 2.6934 -3.6940 0.7284 28 1 1.5464 -5.7620 0.0692 29 1 -0.4346 -5.6714 -1.3858 30 1 1.3361 -4.9570 -3.8277 31 1 1.9379 -7.2962 -4.3023 32 1 0.1972 -8.9053 -4.9680 33 1 -2.7527 -5.8346 -4.6634 34 1 -0.1487 -1.4136 -1.5701 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192147555.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:30 Heat of formation + Delta-G solvation = -105.329741 kcal Electronic energy + Delta-G solvation = -24661.558697 eV Core-core repulsion = 20759.523200 eV Total energy + Delta-G solvation = -3902.035497 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 322.051 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.04415 -40.06534 -39.00981 -37.00562 -36.84235 -35.59445 -33.82395 -31.57511 -30.67151 -29.93961 -29.13469 -25.62109 -23.72758 -22.90944 -22.39741 -21.41456 -19.71877 -18.72430 -17.95167 -17.21531 -16.76304 -16.40981 -16.21985 -15.97752 -15.75025 -15.36633 -14.97020 -14.54902 -14.27622 -14.04065 -13.41646 -13.16334 -12.80453 -12.72978 -12.45373 -12.41395 -12.23397 -11.89922 -11.78856 -11.73357 -11.61117 -11.26563 -11.19406 -10.91253 -10.66924 -10.58728 -10.17228 -9.84046 -9.61327 -9.37611 -8.94496 -7.80671 -7.76191 -7.00284 -4.62738 0.45343 0.74577 1.00108 2.37498 2.62742 2.90409 2.98564 3.00643 3.07497 3.30103 3.78913 3.95401 4.03851 4.29585 4.43672 4.65222 4.77784 4.99475 5.14832 5.30601 5.37678 5.69481 5.80834 5.85138 5.94203 6.03651 6.05766 6.12372 6.48958 6.64187 6.72569 6.75870 6.98549 7.22587 7.41486 7.54523 7.70676 7.92739 8.27241 8.57285 8.59612 9.94356 Molecular weight = 322.05amu Principal moments of inertia in cm(-1) A = 0.022190 B = 0.004194 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.539691 B = 6674.688302 C = 7296.703100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.073 3.927 3 Si 0.915 3.085 4 H -0.259 1.259 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.447 4.447 8 H 0.088 0.912 9 C 0.116 3.884 10 C -0.215 4.215 11 C -0.073 4.073 12 C -0.256 4.256 13 C 0.064 3.936 14 O -0.653 6.653 15 S 2.675 3.325 16 O -0.949 6.949 17 O -0.943 6.943 18 C -0.664 4.664 19 C -0.010 4.010 20 C -0.113 4.113 21 C -0.101 4.101 22 C 0.070 3.930 23 F -0.138 7.138 24 C -0.053 4.053 25 C -0.124 4.124 26 H 0.289 0.711 27 H 0.104 0.896 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.153 0.847 31 H 0.143 0.857 32 H 0.141 0.859 33 H 0.151 0.849 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.308 -9.820 -5.894 11.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.147 4.147 3 Si 0.738 3.262 4 H -0.184 1.184 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.476 4.476 8 H 0.106 0.894 9 C 0.113 3.887 10 C -0.235 4.235 11 C -0.092 4.092 12 C -0.277 4.277 13 C 0.024 3.976 14 O -0.613 6.613 15 S 2.766 3.234 16 O -0.947 6.947 17 O -0.942 6.942 18 C -0.746 4.746 19 C -0.029 4.029 20 C -0.132 4.132 21 C -0.120 4.120 22 C 0.050 3.950 23 F -0.117 7.117 24 C -0.072 4.072 25 C -0.146 4.146 26 H 0.100 0.900 27 H 0.122 0.878 28 H 0.121 0.879 29 H 0.119 0.881 30 H 0.171 0.829 31 H 0.161 0.839 32 H 0.158 0.842 33 H 0.169 0.831 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.697 -9.055 -5.975 10.871 hybrid contribution 0.027 -0.309 -0.200 0.369 sum 0.724 -9.364 -6.176 11.241 Atomic orbital electron populations 1.69755 1.07833 1.30368 1.32745 1.26042 0.94844 1.01980 0.91869 0.86241 0.80167 0.79488 0.80261 1.18359 1.20052 1.18737 1.19640 0.98457 0.90849 1.38624 0.89419 1.17416 0.90124 0.92787 0.88339 1.21134 1.03945 0.92462 1.05948 1.20344 0.94666 0.97210 0.96984 1.20307 1.02639 0.94287 1.10473 1.18116 0.85430 0.95908 0.98175 1.85659 1.46351 1.91123 1.38195 1.02769 0.73617 0.73465 0.73568 1.93565 1.45904 1.83938 1.71288 1.93648 1.49760 1.66493 1.84272 1.31360 1.01187 1.26855 1.15193 1.21166 0.94451 0.96757 0.90559 1.21194 0.99847 0.92870 0.99301 1.21440 0.91333 1.01159 0.98066 1.17675 0.86264 0.87575 1.03454 1.91509 1.63013 1.67747 1.89412 1.20887 1.00299 0.91217 0.94819 1.21518 0.98003 0.95776 0.99324 0.90023 0.87832 0.87930 0.88063 0.82909 0.83900 0.84154 0.83117 0.84804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.38 10.96 55.55 0.61 -18.77 16 2 C 0.07 1.72 5.14 -17.34 -0.09 1.63 16 3 Si 0.91 17.63 29.59 -169.99 -5.03 12.60 16 4 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 5 H -0.28 -5.21 7.11 56.52 0.40 -4.81 16 6 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 7 C -0.45 -10.95 9.05 -37.75 -0.34 -11.29 16 8 H 0.09 2.00 7.91 -52.48 -0.41 1.58 16 9 C 0.12 2.87 5.57 -106.85 -0.60 2.28 16 10 C -0.21 -4.65 9.79 -38.85 -0.38 -5.03 16 11 C -0.07 -1.44 10.02 -39.68 -0.40 -1.83 16 12 C -0.26 -5.16 8.42 -39.13 -0.33 -5.49 16 13 C 0.06 1.46 4.79 -39.29 -0.19 1.27 16 14 O -0.65 -13.85 10.15 -51.53 -0.52 -14.38 16 15 S 2.67 51.48 5.42 -107.50 -0.58 50.89 16 16 O -0.95 -19.30 17.27 -66.81 -1.15 -20.46 16 17 O -0.94 -20.13 15.59 -66.81 -1.04 -21.17 16 18 C -0.66 -10.56 5.29 -39.59 -0.21 -10.77 16 19 C -0.01 -0.15 8.48 -39.58 -0.34 -0.48 16 20 C -0.11 -1.28 10.04 -39.59 -0.40 -1.67 16 21 C -0.10 -1.11 10.03 -39.51 -0.40 -1.50 16 22 C 0.07 0.92 7.30 -39.42 -0.29 0.63 16 23 F -0.14 -1.79 17.27 2.25 0.04 -1.75 16 24 C -0.05 -0.77 9.50 -39.51 -0.38 -1.14 16 25 C -0.12 -3.11 7.83 -38.73 -0.30 -3.41 16 26 H 0.29 6.49 8.30 -40.82 -0.34 6.15 16 27 H 0.10 2.04 8.06 -52.48 -0.42 1.62 16 28 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 29 H 0.10 1.82 7.96 -52.49 -0.42 1.40 16 30 H 0.15 2.22 7.61 -52.49 -0.40 1.82 16 31 H 0.14 1.16 8.06 -52.48 -0.42 0.74 16 32 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 33 H 0.15 2.05 7.62 -52.49 -0.40 1.65 16 34 H 0.13 3.56 6.16 -52.49 -0.32 3.24 16 LS Contribution 316.60 15.07 4.77 4.77 Total: -1.00 -28.58 316.60 -10.32 -38.90 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -2.78 Total: 6.18 kcal Atomic # 6 Polarization: -32.19 SS G_CDS: -4.63 Total: -36.82 kcal Atomic # 7 Polarization: -19.38 SS G_CDS: 0.61 Total: -18.77 kcal Atomic # 8 Polarization: -53.28 SS G_CDS: -2.72 Total: -56.00 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 17.63 SS G_CDS: -5.03 Total: 12.60 kcal Atomic # 16 Polarization: 51.48 SS G_CDS: -0.58 Total: 50.89 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.58 -10.32 -38.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192147555.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.433 kcal (2) G-P(sol) polarization free energy of solvation -28.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds