Wall clock time and date at job start Tue Mar 31 2020 13:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00022 * 2 1 4 4 H 1.48503 * 109.47211 * 270.00106 * 3 2 1 5 5 H 1.48505 * 109.47188 * 29.99735 * 3 2 1 6 6 H 1.48496 * 109.47518 * 149.99962 * 3 2 1 7 7 C 1.37882 * 120.00164 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99740 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99923 * 180.02562 * 7 2 1 10 10 N 1.46504 * 109.47059 * 180.02562 * 9 7 2 11 11 C 1.46504 * 119.99611 * 270.00203 * 10 9 7 12 12 C 1.53005 * 109.46579 * 274.04067 * 11 10 9 13 13 F 1.39901 * 109.47045 * 60.00158 * 12 11 10 14 14 F 1.39898 * 109.46952 * 180.02562 * 12 11 10 15 15 F 1.39901 * 109.47141 * 300.00167 * 12 11 10 16 16 C 1.34769 * 120.00240 * 89.99391 * 10 9 7 17 17 O 1.21519 * 120.00230 * 185.02693 * 16 10 9 18 18 C 1.48075 * 120.00184 * 5.03451 * 16 10 9 19 19 C 1.39876 * 120.93004 * 304.30883 * 18 16 10 20 20 C 1.38079 * 119.02000 * 180.34349 * 19 18 16 21 21 N 1.31848 * 120.94017 * 359.65616 * 20 19 18 22 22 C 1.31763 * 122.07209 * 0.02562 * 21 20 19 23 23 C 1.38353 * 120.86968 * 0.02562 * 22 21 20 24 24 Cl 1.73602 * 120.51825 * 179.97438 * 23 22 21 25 25 H 0.97002 * 120.00019 * 359.97438 * 1 2 3 26 26 H 1.08990 * 109.47392 * 60.00015 * 9 7 2 27 27 H 1.09003 * 109.46828 * 300.00103 * 9 7 2 28 28 H 1.08997 * 109.47185 * 34.03754 * 11 10 9 29 29 H 1.08996 * 109.46761 * 154.04566 * 11 10 9 30 30 H 1.07996 * 120.48936 * 0.02562 * 19 18 16 31 31 H 1.07994 * 119.53182 * 179.68558 * 20 19 18 32 32 H 1.07999 * 119.56304 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 7 3.9999 -2.5752 0.0010 11 6 4.2435 -3.2661 1.2698 12 6 5.6557 -2.9438 1.7628 13 9 5.7797 -1.5633 1.9522 14 9 5.8886 -3.6039 2.9741 15 9 6.5900 -3.3700 0.8128 16 6 4.2249 -3.2104 -1.1662 17 8 4.5419 -4.3835 -1.1683 18 6 4.0860 -2.4787 -2.4460 19 6 2.8957 -1.8206 -2.7724 20 6 2.8068 -1.1564 -3.9797 21 7 3.8257 -1.1313 -4.8162 22 6 4.9671 -1.7319 -4.5467 23 6 5.1436 -2.4217 -3.3605 24 17 6.6511 -3.2103 -3.0151 25 1 -0.4850 0.8401 0.0004 26 1 3.8745 -0.6800 0.8910 27 1 3.8751 -0.6803 -0.8889 28 1 3.5156 -2.9339 2.0099 29 1 4.1469 -4.3417 1.1221 30 1 2.0568 -1.8361 -2.0925 31 1 1.8900 -0.6498 -4.2423 32 1 5.7753 -1.6857 -5.2616 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267171712.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:04 Heat of formation + Delta-G solvation = -166.545044 kcal Electronic energy + Delta-G solvation = -25974.688821 eV Core-core repulsion = 21546.018344 eV Total energy + Delta-G solvation = -4428.670477 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 322.044 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -51.12743 -48.64709 -48.61493 -41.85158 -40.29475 -37.75777 -37.18827 -34.75873 -33.91010 -32.13873 -31.24996 -29.44449 -26.11176 -24.69459 -24.62527 -24.04918 -21.20102 -19.68002 -19.63106 -19.26230 -18.67895 -18.40632 -17.92651 -17.48496 -17.00071 -16.44760 -16.17251 -15.58747 -15.54199 -15.44561 -15.16047 -15.06011 -15.03625 -14.80487 -14.80034 -14.75696 -14.34481 -13.86483 -13.57083 -13.33261 -13.10696 -13.01943 -12.92743 -12.56025 -12.30106 -12.16686 -11.75045 -11.53279 -10.91573 -10.75271 -10.58377 -10.04100 -9.91510 -8.32288 -6.38470 -0.41168 -0.08508 0.86572 1.22340 1.36785 1.43588 1.47556 1.64040 1.86964 2.31259 2.56808 2.78051 2.96682 3.00474 3.13351 3.29572 3.38719 3.66506 3.77881 4.03351 4.18512 4.30751 4.42615 4.57009 4.72202 4.76445 4.96455 5.22756 5.35632 5.44873 5.95678 6.26842 6.64577 6.69418 6.80489 7.25330 8.81139 Molecular weight = 322.04amu Principal moments of inertia in cm(-1) A = 0.009331 B = 0.008648 C = 0.005199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3000.002433 B = 3236.792058 C = 5384.282506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.048 3.952 3 Si 0.908 3.092 4 H -0.261 1.261 5 H -0.284 1.284 6 H -0.251 1.251 7 C -0.536 4.536 8 H 0.055 0.945 9 C 0.210 3.790 10 N -0.586 5.586 11 C 0.075 3.925 12 C 0.438 3.562 13 F -0.186 7.186 14 F -0.176 7.176 15 F -0.187 7.187 16 C 0.569 3.431 17 O -0.542 6.542 18 C -0.089 4.089 19 C -0.117 4.117 20 C 0.098 3.902 21 N -0.465 5.465 22 C 0.110 3.890 23 C -0.064 4.064 24 Cl -0.040 7.040 25 H 0.271 0.729 26 H 0.051 0.949 27 H 0.038 0.962 28 H 0.144 0.856 29 H 0.134 0.866 30 H 0.167 0.833 31 H 0.188 0.812 32 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.663 -1.958 -2.785 10.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.154 4.154 3 Si 0.732 3.268 4 H -0.186 1.186 5 H -0.210 1.210 6 H -0.174 1.174 7 C -0.574 4.574 8 H 0.073 0.927 9 C 0.089 3.911 10 N -0.316 5.316 11 C -0.050 4.050 12 C 0.382 3.618 13 F -0.167 7.167 14 F -0.158 7.158 15 F -0.169 7.169 16 C 0.357 3.643 17 O -0.420 6.420 18 C -0.101 4.101 19 C -0.137 4.137 20 C -0.058 4.058 21 N -0.174 5.174 22 C -0.048 4.048 23 C -0.093 4.093 24 Cl -0.011 7.011 25 H 0.081 0.919 26 H 0.069 0.931 27 H 0.056 0.944 28 H 0.162 0.838 29 H 0.152 0.848 30 H 0.184 0.816 31 H 0.205 0.795 32 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 9.736 -2.067 -3.516 10.556 hybrid contribution 0.358 0.376 1.234 1.339 sum 10.094 -1.691 -2.282 10.486 Atomic orbital electron populations 1.69968 1.07647 1.28434 1.49762 1.25342 0.95028 1.01479 0.93577 0.86292 0.80035 0.80629 0.79837 1.18572 1.20972 1.17445 1.21220 0.89662 0.93913 1.52621 0.92716 1.19929 0.94513 0.77662 0.99023 1.47669 1.63804 1.16245 1.03877 1.22689 0.90928 1.02703 0.88679 1.21344 0.90745 0.74280 0.75402 1.93174 1.96778 1.31659 1.95135 1.93177 1.95564 1.80815 1.46215 1.93193 1.69170 1.89719 1.64780 1.18278 0.75976 0.86114 0.83966 1.90744 1.48146 1.15736 1.87335 1.20181 0.95366 0.99539 0.94965 1.23179 0.98316 0.93507 0.98687 1.23191 0.98104 0.95499 0.89008 1.67763 0.99988 1.16890 1.32729 1.23181 0.96367 0.92018 0.93239 1.22280 0.89004 1.00825 0.97240 1.98390 1.29048 1.78662 1.94982 0.91926 0.93071 0.94440 0.83779 0.84792 0.81625 0.79546 0.78357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.11 13.96 21.45 0.30 -47.81 16 2 C 0.05 2.29 5.47 84.66 0.46 2.75 16 3 Si 0.91 36.76 27.47 68.60 1.88 38.65 16 4 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 5 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 6 H -0.25 -9.64 6.54 99.48 0.65 -8.99 16 7 C -0.54 -24.43 7.14 25.60 0.18 -24.24 16 8 H 0.05 2.81 8.04 -2.91 -0.02 2.79 16 9 C 0.21 8.26 3.57 85.63 0.31 8.56 16 10 N -0.59 -21.46 2.37 -829.32 -1.97 -23.43 16 11 C 0.08 2.32 5.52 86.38 0.48 2.79 16 12 C 0.44 13.26 3.29 71.98 0.24 13.49 16 13 F -0.19 -5.96 15.85 44.97 0.71 -5.25 16 14 F -0.18 -4.85 17.32 44.97 0.78 -4.07 16 15 F -0.19 -6.24 16.95 44.97 0.76 -5.48 16 16 C 0.57 21.62 6.34 86.86 0.55 22.17 16 17 O -0.54 -21.97 15.89 -3.77 -0.06 -22.03 16 18 C -0.09 -3.15 4.67 -19.86 -0.09 -3.25 16 19 C -0.12 -4.06 7.91 22.63 0.18 -3.88 16 20 C 0.10 2.94 11.17 84.65 0.95 3.89 16 21 N -0.46 -13.41 10.33 -195.92 -2.02 -15.44 16 22 C 0.11 2.93 10.99 84.73 0.93 3.86 16 23 C -0.06 -1.98 6.38 22.71 0.14 -1.84 16 24 Cl -0.04 -1.18 27.65 -2.72 -0.08 -1.26 16 25 H 0.27 13.45 8.31 -92.71 -0.77 12.68 16 26 H 0.05 2.00 5.95 -2.39 -0.01 1.98 16 27 H 0.04 1.48 5.54 -2.39 -0.01 1.47 16 28 H 0.14 3.98 8.10 -2.39 -0.02 3.96 16 29 H 0.13 3.89 7.24 -2.39 -0.02 3.88 16 30 H 0.17 6.55 5.24 -2.91 -0.02 6.54 16 31 H 0.19 4.75 8.06 -2.91 -0.02 4.73 16 32 H 0.20 3.80 8.06 -2.91 -0.02 3.78 16 Total: -1.00 -55.26 305.53 5.78 -49.49 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: 1.14 Total: 12.33 kcal Atomic # 6 Polarization: 19.99 SS G_CDS: 4.32 Total: 24.31 kcal Atomic # 7 Polarization: -82.99 SS G_CDS: -3.69 Total: -86.68 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.06 Total: -22.03 kcal Atomic # 9 Polarization: -17.06 SS G_CDS: 2.25 Total: -14.80 kcal Atomic # 14 Polarization: 36.76 SS G_CDS: 1.88 Total: 38.65 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -0.08 Total: -1.26 kcal Total: -55.26 5.78 -49.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267171712.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.058 kcal (2) G-P(sol) polarization free energy of solvation -55.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds