Wall clock time and date at job start Tue Mar 31 2020 12:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99944 * 2 1 4 4 H 1.48497 * 109.47068 * 270.00181 * 3 2 1 5 5 H 1.48507 * 109.46787 * 30.00174 * 3 2 1 6 6 H 1.48500 * 109.47081 * 149.99664 * 3 2 1 7 7 C 1.37878 * 120.00248 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99674 * 0.02562 * 7 2 1 9 9 C 1.50691 * 120.00209 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.47593 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47404 * 180.02562 * 10 9 7 12 12 O 1.20825 * 119.99919 * 359.97438 * 11 10 9 13 13 O 1.34261 * 119.99800 * 180.02562 * 11 10 9 14 14 C 1.35940 * 116.99753 * 185.76959 * 13 11 10 15 15 C 1.38749 * 120.04339 * 249.01449 * 14 13 11 16 16 C 1.38114 * 119.95602 * 179.97438 * 15 14 13 17 17 C 1.38389 * 120.04315 * 0.02562 * 16 15 14 18 18 Cl 1.73604 * 119.95698 * 180.27656 * 17 16 15 19 19 C 1.38348 * 120.08624 * 0.02562 * 17 16 15 20 20 C 1.50703 * 119.97931 * 179.97438 * 19 17 16 21 21 F 1.39899 * 109.46958 * 179.97438 * 20 19 17 22 22 F 1.39899 * 109.47105 * 299.99333 * 20 19 17 23 23 F 1.39899 * 109.47271 * 59.99921 * 20 19 17 24 24 C 1.38160 * 120.04464 * 359.96708 * 19 17 16 25 25 H 0.96993 * 119.99915 * 359.97438 * 1 2 3 26 26 H 1.09008 * 109.47253 * 60.00354 * 9 7 2 27 27 H 1.09005 * 109.47845 * 300.00855 * 9 7 2 28 28 H 1.09001 * 109.46872 * 60.00446 * 10 9 7 29 29 H 1.08999 * 109.47146 * 300.00407 * 10 9 7 30 30 H 1.07997 * 120.01946 * 359.97438 * 15 14 13 31 31 H 1.07995 * 119.97662 * 180.02562 * 16 15 14 32 32 H 1.07998 * 120.02465 * 180.02562 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0217 -2.6365 0.0001 11 6 5.5287 -2.6364 0.0001 12 8 6.1328 -1.5900 -0.0004 13 8 6.2000 -3.7991 -0.0003 14 6 7.5522 -3.7311 0.1216 15 6 8.3643 -4.0685 -0.9517 16 6 9.7379 -3.9982 -0.8261 17 6 10.3044 -3.5919 0.3694 18 17 12.0311 -3.4974 0.5226 19 6 9.4964 -3.2560 1.4410 20 6 10.1159 -2.8145 2.7419 21 9 9.1055 -2.5306 3.6669 22 9 10.9314 -3.8361 3.2405 23 9 10.8858 -1.6666 2.5260 24 6 8.1219 -3.3250 1.3193 25 1 -0.4850 0.8400 0.0004 26 1 3.8753 -0.6796 0.8895 27 1 3.8747 -0.6807 -0.8904 28 1 3.6581 -3.1505 -0.8897 29 1 3.6587 -3.1502 0.8903 30 1 7.9225 -4.3860 -1.8846 31 1 10.3702 -4.2604 -1.6613 32 1 7.4914 -3.0623 2.1559 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291222835.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:19 Heat of formation + Delta-G solvation = -211.113365 kcal Electronic energy + Delta-G solvation = -24265.385967 eV Core-core repulsion = 19802.490112 eV Total energy + Delta-G solvation = -4462.895855 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 322.037 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.41940 -47.93947 -47.86004 -41.48444 -39.36760 -37.30797 -36.61125 -33.78203 -32.61261 -31.65979 -30.59883 -26.84886 -26.51822 -23.99127 -22.85321 -21.75517 -20.21324 -19.08443 -18.76342 -18.74240 -17.73081 -17.18955 -16.96724 -16.86887 -16.09955 -15.29069 -14.88079 -14.85408 -14.48303 -14.31179 -14.25198 -14.02011 -14.01648 -13.94082 -13.71845 -13.42257 -13.14918 -12.71111 -12.68315 -12.39459 -11.95704 -11.61033 -11.49284 -11.15380 -11.10692 -10.54998 -10.33874 -10.19997 -9.88340 -9.84360 -9.36742 -9.10506 -8.63794 -6.15138 -4.16212 0.18817 0.47890 1.42874 2.19304 2.32776 2.48302 3.05996 3.28456 3.32815 3.36271 3.43898 3.64783 4.09060 4.18195 4.38764 4.42770 4.54378 4.69873 4.93257 5.15741 5.19292 5.34873 5.43060 5.61422 5.78136 5.80487 5.93882 6.34238 6.49830 7.09455 7.16395 7.59476 7.89569 8.36667 8.86296 9.45938 10.97217 Molecular weight = 322.04amu Principal moments of inertia in cm(-1) A = 0.020817 B = 0.003068 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.763649 B = 9124.058588 C = 9642.197255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.073 3.927 3 Si 0.876 3.124 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.530 4.530 8 H 0.077 0.923 9 C -0.003 4.003 10 C -0.092 4.092 11 C 0.455 3.545 12 O -0.486 6.486 13 O -0.296 6.296 14 C 0.103 3.897 15 C -0.077 4.077 16 C -0.095 4.095 17 C 0.000 4.000 18 Cl -0.042 7.042 19 C -0.162 4.162 20 C 0.512 3.488 21 F -0.171 7.171 22 F -0.169 7.169 23 F -0.168 7.168 24 C -0.071 4.071 25 H 0.265 0.735 26 H 0.027 0.973 27 H 0.023 0.977 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.154 0.846 31 H 0.155 0.845 32 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.148 -10.761 0.840 25.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.130 4.130 3 Si 0.703 3.297 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.186 1.186 7 C -0.568 4.568 8 H 0.095 0.905 9 C -0.040 4.040 10 C -0.129 4.129 11 C 0.300 3.700 12 O -0.369 6.369 13 O -0.213 6.213 14 C 0.060 3.940 15 C -0.095 4.095 16 C -0.113 4.113 17 C -0.027 4.027 18 Cl -0.013 7.013 19 C -0.165 4.165 20 C 0.457 3.543 21 F -0.152 7.152 22 F -0.151 7.151 23 F -0.149 7.149 24 C -0.089 4.089 25 H 0.075 0.925 26 H 0.045 0.955 27 H 0.041 0.959 28 H 0.123 0.877 29 H 0.123 0.877 30 H 0.172 0.828 31 H 0.172 0.828 32 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 23.357 -10.264 0.882 25.528 hybrid contribution 0.656 1.021 0.247 1.238 sum 24.013 -9.243 1.129 25.755 Atomic orbital electron populations 1.69893 1.06276 1.27211 1.50193 1.24944 0.94723 0.99196 0.94100 0.86822 0.80577 0.83462 0.78846 1.20098 1.21192 1.18626 1.20970 0.88580 0.94893 1.52340 0.90525 1.19526 0.97189 0.89183 0.98127 1.21661 0.81708 1.04081 1.05450 1.25439 0.92783 0.80356 0.71462 1.90692 1.70170 1.32183 1.43877 1.84805 1.15859 1.36840 1.83796 1.18491 0.82972 0.99704 0.92783 1.21373 0.92470 0.97414 0.98288 1.20939 0.94569 0.99626 0.96176 1.20636 0.85800 1.01433 0.94849 1.98422 1.08538 1.96455 1.97904 1.19634 0.94262 1.09008 0.93557 1.17990 0.76441 0.75592 0.84233 1.93206 1.60033 1.93626 1.68367 1.93240 1.73677 1.59346 1.88807 1.93252 1.76088 1.50770 1.94786 1.21198 0.93025 0.95986 0.98716 0.92471 0.95463 0.95901 0.87706 0.87664 0.82840 0.82761 0.82854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.81 13.96 55.43 0.77 -26.04 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.88 21.51 27.47 -169.99 -4.67 16.85 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 6 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 7 C -0.53 -14.30 9.66 -34.44 -0.33 -14.63 16 8 H 0.08 2.16 7.99 -52.49 -0.42 1.74 16 9 C 0.00 -0.06 3.33 -27.89 -0.09 -0.16 16 10 C -0.09 -1.61 5.75 -27.88 -0.16 -1.77 16 11 C 0.46 7.60 7.73 36.01 0.28 7.87 16 12 O -0.49 -9.53 15.40 -18.75 -0.29 -9.82 16 13 O -0.30 -4.13 10.04 -23.66 -0.24 -4.37 16 14 C 0.10 1.29 5.27 -39.22 -0.21 1.08 16 15 C -0.08 -0.74 9.99 -39.44 -0.39 -1.14 16 16 C -0.09 -0.81 9.82 -39.57 -0.39 -1.20 16 17 C 0.00 0.00 6.25 -39.49 -0.25 -0.25 16 18 Cl -0.04 -0.41 26.58 -51.86 -1.38 -1.79 16 19 C -0.16 -1.90 5.37 -104.61 -0.56 -2.46 16 20 C 0.51 6.05 2.86 36.01 0.10 6.16 16 21 F -0.17 -2.11 15.97 2.25 0.04 -2.07 16 22 F -0.17 -1.92 16.40 2.25 0.04 -1.88 16 23 F -0.17 -2.07 16.37 2.25 0.04 -2.03 16 24 C -0.07 -0.88 8.71 -39.44 -0.34 -1.23 16 25 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 26 H 0.03 0.65 7.16 -51.92 -0.37 0.27 16 27 H 0.02 0.53 7.53 -51.93 -0.39 0.14 16 28 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 29 H 0.11 1.68 8.14 -51.93 -0.42 1.26 16 30 H 0.15 1.12 8.06 -52.49 -0.42 0.69 16 31 H 0.15 0.85 8.06 -52.49 -0.42 0.43 16 32 H 0.15 1.90 7.15 -52.49 -0.38 1.52 16 LS Contribution 313.70 15.07 4.73 4.73 Total: -1.00 -30.72 313.70 -5.82 -36.54 By element: Atomic # 1 Polarization: -1.96 SS G_CDS: -2.41 Total: -4.38 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: -2.44 Total: -5.75 kcal Atomic # 7 Polarization: -26.81 SS G_CDS: 0.77 Total: -26.04 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: -0.53 Total: -14.18 kcal Atomic # 9 Polarization: -6.10 SS G_CDS: 0.11 Total: -5.99 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.85 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -1.38 Total: -1.79 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.72 -5.82 -36.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291222835.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -174.569 kcal (2) G-P(sol) polarization free energy of solvation -30.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds