Wall clock time and date at job start Tue Mar 31 2020 12:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99944 * 2 1 4 4 H 1.48497 * 109.47068 * 270.00181 * 3 2 1 5 5 H 1.48507 * 109.46787 * 30.00174 * 3 2 1 6 6 H 1.48500 * 109.47081 * 149.99664 * 3 2 1 7 7 C 1.37878 * 120.00248 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99674 * 0.02562 * 7 2 1 9 9 C 1.50691 * 120.00209 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.47593 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47404 * 180.02562 * 10 9 7 12 12 O 1.20825 * 119.99919 * 359.97438 * 11 10 9 13 13 O 1.34261 * 119.99800 * 180.02562 * 11 10 9 14 14 C 1.35940 * 116.99753 * 185.76959 * 13 11 10 15 15 C 1.38749 * 120.04339 * 249.01449 * 14 13 11 16 16 C 1.38114 * 119.95602 * 179.97438 * 15 14 13 17 17 C 1.38389 * 120.04315 * 0.02562 * 16 15 14 18 18 Cl 1.73604 * 119.95698 * 180.27656 * 17 16 15 19 19 C 1.38348 * 120.08624 * 0.02562 * 17 16 15 20 20 C 1.50703 * 119.97931 * 179.97438 * 19 17 16 21 21 F 1.39899 * 109.46958 * 179.97438 * 20 19 17 22 22 F 1.39899 * 109.47105 * 299.99333 * 20 19 17 23 23 F 1.39899 * 109.47271 * 59.99921 * 20 19 17 24 24 C 1.38160 * 120.04464 * 359.96708 * 19 17 16 25 25 H 0.96993 * 119.99915 * 359.97438 * 1 2 3 26 26 H 1.09008 * 109.47253 * 60.00354 * 9 7 2 27 27 H 1.09005 * 109.47845 * 300.00855 * 9 7 2 28 28 H 1.09001 * 109.46872 * 60.00446 * 10 9 7 29 29 H 1.08999 * 109.47146 * 300.00407 * 10 9 7 30 30 H 1.07997 * 120.01946 * 359.97438 * 15 14 13 31 31 H 1.07995 * 119.97662 * 180.02562 * 16 15 14 32 32 H 1.07998 * 120.02465 * 180.02562 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0217 -2.6365 0.0001 11 6 5.5287 -2.6364 0.0001 12 8 6.1328 -1.5900 -0.0004 13 8 6.2000 -3.7991 -0.0003 14 6 7.5522 -3.7311 0.1216 15 6 8.3643 -4.0685 -0.9517 16 6 9.7379 -3.9982 -0.8261 17 6 10.3044 -3.5919 0.3694 18 17 12.0311 -3.4974 0.5226 19 6 9.4964 -3.2560 1.4410 20 6 10.1159 -2.8145 2.7419 21 9 9.1055 -2.5306 3.6669 22 9 10.9314 -3.8361 3.2405 23 9 10.8858 -1.6666 2.5260 24 6 8.1219 -3.3250 1.3193 25 1 -0.4850 0.8400 0.0004 26 1 3.8753 -0.6796 0.8895 27 1 3.8747 -0.6807 -0.8904 28 1 3.6581 -3.1505 -0.8897 29 1 3.6587 -3.1502 0.8903 30 1 7.9225 -4.3860 -1.8846 31 1 10.3702 -4.2604 -1.6613 32 1 7.4914 -3.0623 2.1559 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291222835.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:18 Heat of formation + Delta-G solvation = -226.763474 kcal Electronic energy + Delta-G solvation = -24266.064607 eV Core-core repulsion = 19802.490112 eV Total energy + Delta-G solvation = -4463.574495 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 322.037 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -51.35776 -48.88900 -48.79448 -42.59582 -40.33866 -38.38465 -37.54215 -35.66615 -33.54505 -33.38976 -31.57566 -28.54969 -27.41921 -25.21293 -23.81226 -23.06157 -21.68034 -20.11441 -19.72218 -19.69074 -19.31995 -18.41367 -18.00883 -17.83072 -17.50520 -16.45738 -16.27772 -15.78665 -15.76344 -15.38086 -15.25491 -15.14402 -14.96325 -14.91884 -14.85720 -14.71806 -14.57501 -14.06774 -13.63706 -13.49265 -13.42683 -12.94959 -12.76995 -12.37251 -12.27719 -12.07915 -12.01963 -11.84157 -11.64120 -11.42979 -10.78894 -10.66342 -9.99320 -8.31854 -6.35990 -0.66569 -0.35570 0.63433 0.97441 1.32335 1.34147 1.37515 1.48725 1.49541 2.13536 2.33952 2.41973 2.73932 3.04027 3.16920 3.35601 3.51090 3.72285 3.86786 3.99587 4.22807 4.32663 4.37427 4.49880 4.64629 4.78306 4.86578 5.06282 5.25119 5.34615 5.38570 5.58007 6.20734 6.63352 6.73898 7.29386 8.83567 Molecular weight = 322.04amu Principal moments of inertia in cm(-1) A = 0.020817 B = 0.003068 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.763649 B = 9124.058588 C = 9642.197255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.016 3.984 3 Si 0.935 3.065 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.258 1.258 7 C -0.530 4.530 8 H 0.055 0.945 9 C 0.000 4.000 10 C -0.087 4.087 11 C 0.468 3.532 12 O -0.518 6.518 13 O -0.284 6.284 14 C 0.071 3.929 15 C -0.065 4.065 16 C -0.081 4.081 17 C -0.002 4.002 18 Cl -0.035 7.035 19 C -0.174 4.174 20 C 0.511 3.489 21 F -0.177 7.177 22 F -0.167 7.167 23 F -0.172 7.172 24 C -0.082 4.082 25 H 0.268 0.732 26 H 0.017 0.983 27 H 0.019 0.981 28 H 0.124 0.876 29 H 0.121 0.879 30 H 0.183 0.817 31 H 0.192 0.808 32 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.249 -11.408 -0.276 27.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.182 4.182 3 Si 0.760 3.240 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.182 1.182 7 C -0.568 4.568 8 H 0.073 0.927 9 C -0.038 4.038 10 C -0.124 4.124 11 C 0.314 3.686 12 O -0.405 6.405 13 O -0.200 6.200 14 C 0.029 3.971 15 C -0.083 4.083 16 C -0.099 4.099 17 C -0.029 4.029 18 Cl -0.006 7.006 19 C -0.176 4.176 20 C 0.457 3.543 21 F -0.158 7.158 22 F -0.148 7.148 23 F -0.153 7.153 24 C -0.101 4.101 25 H 0.077 0.923 26 H 0.035 0.965 27 H 0.037 0.963 28 H 0.142 0.858 29 H 0.139 0.861 30 H 0.200 0.800 31 H 0.209 0.791 32 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 25.475 -10.943 -0.231 27.727 hybrid contribution 0.091 1.102 0.599 1.258 sum 25.566 -9.841 0.368 27.397 Atomic orbital electron populations 1.70013 1.07855 1.28178 1.52165 1.25771 0.95439 1.02795 0.94226 0.85873 0.79332 0.79572 0.79223 1.19206 1.20719 1.18238 1.21318 0.90827 0.93935 1.50695 0.92724 1.19363 0.94452 0.92689 0.97302 1.21426 0.82859 1.00903 1.07262 1.24976 0.92394 0.80601 0.70658 1.90683 1.70767 1.33483 1.45539 1.84755 1.17009 1.34953 1.83252 1.18802 0.82252 1.02041 0.93966 1.21722 0.92625 0.95629 0.98311 1.21361 0.94466 0.97739 0.96361 1.20874 0.86155 1.00825 0.95067 1.98430 1.07860 1.96360 1.97921 1.19634 0.94147 1.09982 0.93887 1.18059 0.76327 0.75502 0.84412 1.93191 1.60312 1.93683 1.68658 1.93240 1.73597 1.59164 1.88821 1.93239 1.76199 1.51069 1.94812 1.21183 0.93444 0.96643 0.98837 0.92318 0.96452 0.96299 0.85779 0.86140 0.80000 0.79062 0.83709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.09 13.96 21.45 0.30 -56.79 16 2 C 0.02 0.90 5.47 84.65 0.46 1.36 16 3 Si 0.94 44.37 27.47 68.60 1.88 46.26 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 6 H -0.26 -11.99 6.54 99.48 0.65 -11.34 16 7 C -0.53 -28.71 9.66 25.60 0.25 -28.47 16 8 H 0.05 3.12 7.99 -2.91 -0.02 3.10 16 9 C 0.00 -0.02 3.33 29.85 0.10 0.08 16 10 C -0.09 -2.95 5.75 29.85 0.17 -2.78 16 11 C 0.47 14.97 7.73 71.24 0.55 15.53 16 12 O -0.52 -19.84 15.40 21.96 0.34 -19.51 16 13 O -0.28 -7.41 10.04 4.39 0.04 -7.36 16 14 C 0.07 1.66 5.27 22.50 0.12 1.78 16 15 C -0.06 -1.04 9.99 22.36 0.22 -0.81 16 16 C -0.08 -1.09 9.82 22.28 0.22 -0.88 16 17 C 0.00 -0.04 6.25 22.33 0.14 0.10 16 18 Cl -0.04 -0.59 26.58 -2.72 -0.07 -0.67 16 19 C -0.17 -3.88 5.37 -19.86 -0.11 -3.99 16 20 C 0.51 11.79 2.86 71.24 0.20 11.99 16 21 F -0.18 -4.37 15.97 44.97 0.72 -3.65 16 22 F -0.17 -3.64 16.40 44.97 0.74 -2.90 16 23 F -0.17 -4.12 16.37 44.97 0.74 -3.39 16 24 C -0.08 -2.00 8.71 22.36 0.19 -1.81 16 25 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 26 H 0.02 0.81 7.16 -2.38 -0.02 0.79 16 27 H 0.02 0.86 7.53 -2.38 -0.02 0.84 16 28 H 0.12 3.71 8.14 -2.39 -0.02 3.69 16 29 H 0.12 3.69 8.14 -2.39 -0.02 3.67 16 30 H 0.18 1.84 8.06 -2.91 -0.02 1.82 16 31 H 0.19 1.15 8.06 -2.91 -0.02 1.12 16 32 H 0.15 3.64 7.15 -2.91 -0.02 3.62 16 Total: -1.00 -66.33 313.70 8.34 -57.99 By element: Atomic # 1 Polarization: -3.22 SS G_CDS: 1.13 Total: -2.09 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: 2.52 Total: -7.89 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: 0.30 Total: -56.79 kcal Atomic # 8 Polarization: -27.25 SS G_CDS: 0.38 Total: -26.87 kcal Atomic # 9 Polarization: -12.13 SS G_CDS: 2.19 Total: -9.94 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 1.88 Total: 46.26 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -0.07 Total: -0.67 kcal Total: -66.33 8.34 -57.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291222835.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.774 kcal (2) G-P(sol) polarization free energy of solvation -66.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -235.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -226.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds