Wall clock time and date at job start Tue Mar 31 2020 12:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 O 1.42904 * 112.94304 * 50.61622 * 9 7 2 11 11 C 1.53940 * 113.74765 * 279.01867 * 9 7 2 12 12 N 1.47807 * 86.04034 * 222.08636 * 11 9 7 13 13 C 1.34781 * 134.45550 * 204.64597 * 12 11 9 14 14 O 1.21628 * 119.99859 * 179.86686 * 13 12 11 15 15 C 1.47264 * 120.00017 * 359.86663 * 13 12 11 16 16 C 1.35205 * 123.14298 * 179.73306 * 15 13 12 17 17 S 1.70934 * 108.82992 * 179.90187 * 16 15 13 18 18 C 1.70769 * 91.13011 * 0.30241 * 17 16 15 19 19 C 1.50698 * 124.72364 * 179.82425 * 18 17 16 20 20 F 1.39901 * 109.46972 * 269.99787 * 19 18 17 21 21 F 1.39903 * 109.47204 * 29.99819 * 19 18 17 22 22 F 1.39897 * 109.47565 * 149.99554 * 19 18 17 23 23 N 1.28646 * 110.55815 * 359.82126 * 18 17 16 24 24 C 1.47571 * 91.05019 * 24.54809 * 12 11 9 25 25 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 26 26 H 0.96703 * 113.99734 * 309.65903 * 10 9 7 27 27 H 1.08997 * 113.76880 * 336.35532 * 11 9 7 28 28 H 1.09008 * 113.76856 * 107.74127 * 11 9 7 29 29 H 1.08004 * 125.58521 * 0.02562 * 16 15 13 30 30 H 1.09004 * 113.77444 * 221.15143 * 24 12 11 31 31 H 1.09004 * 113.87147 * 89.76886 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 8 0.2451 -2.5661 -1.0073 11 6 0.7559 -2.9227 1.4000 12 7 1.1919 -4.2852 1.0284 13 6 0.8425 -5.5273 1.4180 14 8 1.3864 -6.4956 0.9221 15 6 -0.1976 -5.7119 2.4439 16 6 -0.6006 -6.9274 2.8777 17 16 -1.8130 -6.7158 4.0639 18 6 -1.7185 -5.0181 3.9062 19 6 -2.5537 -4.0357 4.6862 20 9 -3.7346 -3.7679 3.9854 21 9 -2.8667 -4.5793 5.9367 22 9 -1.8354 -2.8480 4.8607 23 7 -0.8351 -4.6943 3.0289 24 6 2.1610 -3.7398 0.0582 25 1 -0.4850 0.8400 0.0004 26 1 -0.3471 -1.8018 -1.0246 27 1 1.3268 -2.4870 2.2200 28 1 -0.3218 -2.8255 1.5318 29 1 -0.2177 -7.8765 2.5327 30 1 2.2032 -4.2939 -0.8796 31 1 3.1463 -3.5443 0.4813 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331616771.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:10 Heat of formation + Delta-G solvation = -141.616227 kcal Electronic energy + Delta-G solvation = -25097.699083 eV Core-core repulsion = 20672.153308 eV Total energy + Delta-G solvation = -4425.545776 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 322.039 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.36054 -47.94162 -47.76763 -40.57261 -38.99055 -37.26299 -33.94979 -32.19382 -31.69740 -28.97991 -27.69696 -25.93861 -25.21761 -24.10475 -21.92174 -20.20373 -19.63866 -18.75810 -18.23894 -18.18432 -17.65647 -17.20545 -16.16617 -15.55981 -15.41983 -15.05753 -14.80236 -14.65722 -14.27281 -14.17765 -14.14409 -14.01024 -13.94554 -13.92958 -13.18650 -12.84881 -12.62766 -12.51535 -12.17388 -11.98907 -11.54427 -11.07442 -11.02182 -10.50658 -10.33050 -10.18409 -10.12495 -9.90147 -9.39529 -9.31334 -8.74905 -8.40052 -7.88977 -6.35760 -4.46023 0.01867 0.63372 1.12882 1.74563 2.13709 3.16430 3.21586 3.25729 3.29131 3.45332 3.55194 3.88710 4.09206 4.21536 4.34174 4.83752 4.91787 4.93765 5.38189 5.59624 6.01363 6.13251 6.36438 6.57994 6.60204 6.85636 7.00930 7.12733 7.66152 7.84162 8.30347 8.56044 8.56984 9.24624 9.44205 10.71310 Molecular weight = 322.04amu Principal moments of inertia in cm(-1) A = 0.014342 B = 0.004709 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.847649 B = 5944.943480 C = 7402.661313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.073 3.927 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.537 4.537 8 H 0.072 0.928 9 C 0.235 3.765 10 O -0.573 6.573 11 C 0.093 3.907 12 N -0.610 5.610 13 C 0.600 3.400 14 O -0.557 6.557 15 C 0.030 3.970 16 C -0.208 4.208 17 S 0.292 5.708 18 C -0.105 4.105 19 C 0.557 3.443 20 F -0.161 7.161 21 F -0.168 7.168 22 F -0.150 7.150 23 N -0.368 5.368 24 C 0.114 3.886 25 H 0.272 0.728 26 H 0.392 0.608 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.202 0.798 30 H 0.073 0.927 31 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.244 -10.004 11.005 16.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.734 3.266 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.575 4.575 8 H 0.090 0.910 9 C 0.193 3.807 10 O -0.385 6.385 11 C -0.030 4.030 12 N -0.340 5.340 13 C 0.385 3.615 14 O -0.438 6.438 15 C -0.106 4.106 16 C -0.350 4.350 17 S 0.548 5.452 18 C -0.383 4.383 19 C 0.499 3.501 20 F -0.142 7.142 21 F -0.149 7.149 22 F -0.131 7.131 23 N -0.084 5.084 24 C -0.008 4.008 25 H 0.083 0.917 26 H 0.247 0.753 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.219 0.781 30 H 0.092 0.908 31 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.409 -11.150 11.185 17.044 hybrid contribution 0.635 1.741 -0.308 1.879 sum -5.774 -9.409 10.877 15.497 Atomic orbital electron populations 1.69415 1.06141 1.28060 1.49854 1.25063 0.95013 0.99840 0.93091 0.86296 0.80070 0.82401 0.77840 1.19464 1.20664 1.20678 1.21489 0.93891 0.89833 1.52329 0.90995 1.19905 0.85681 0.91109 0.83969 1.86044 1.47089 1.49827 1.55527 1.24390 1.01127 0.75765 1.01679 1.50137 1.38955 1.04867 1.40069 1.16543 0.81448 0.82819 0.80679 1.90765 1.56277 1.39390 1.57366 1.20656 1.01391 0.86838 1.01750 1.27006 1.01854 1.04474 1.01711 1.82710 1.31113 0.99398 1.32021 1.26923 1.06131 0.98805 1.06473 1.16854 0.77587 0.79132 0.76527 1.93278 1.48172 1.94077 1.78667 1.93234 1.93263 1.85757 1.42633 1.93306 1.77509 1.47171 1.95108 1.66839 1.03318 1.34336 1.03895 1.23562 0.93308 0.92901 0.91026 0.91730 0.75296 0.90072 0.90230 0.78112 0.90813 0.89181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.04 11.21 55.43 0.62 -22.42 16 2 C 0.07 1.83 5.40 -17.82 -0.10 1.74 16 3 Si 0.91 19.66 29.54 -169.99 -5.02 14.64 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 6 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.54 -13.58 8.61 -34.44 -0.30 -13.87 16 8 H 0.07 1.77 7.81 -52.49 -0.41 1.36 16 9 C 0.24 5.72 1.40 -90.85 -0.13 5.60 16 10 O -0.57 -14.93 13.49 -35.23 -0.48 -15.41 16 11 C 0.09 2.10 7.15 -2.84 -0.02 2.08 16 12 N -0.61 -13.36 3.61 -179.45 -0.65 -14.01 16 13 C 0.60 12.48 8.03 -12.59 -0.10 12.38 16 14 O -0.56 -12.39 17.44 5.25 0.09 -12.30 16 15 C 0.03 0.52 6.69 -84.53 -0.57 -0.04 16 16 C -0.21 -2.64 10.62 29.65 0.31 -2.32 16 17 S 0.29 2.86 22.57 -107.50 -2.43 0.43 16 18 C -0.10 -1.44 6.71 -13.61 -0.09 -1.54 16 19 C 0.56 7.26 3.55 36.00 0.13 7.39 16 20 F -0.16 -2.14 17.30 2.25 0.04 -2.10 16 21 F -0.17 -1.81 16.98 2.25 0.04 -1.77 16 22 F -0.15 -2.26 17.21 2.25 0.04 -2.22 16 23 N -0.37 -6.34 8.51 -8.51 -0.07 -6.42 16 24 C 0.11 2.49 8.23 -2.97 -0.02 2.46 16 25 H 0.27 6.66 8.31 -40.82 -0.34 6.33 16 26 H 0.39 10.34 6.61 45.56 0.30 10.64 16 27 H 0.08 1.81 8.09 -51.93 -0.42 1.39 16 28 H 0.08 1.89 7.33 -51.92 -0.38 1.51 16 29 H 0.20 2.12 8.03 -52.48 -0.42 1.70 16 30 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 31 H 0.09 1.79 8.09 -51.93 -0.42 1.37 16 LS Contribution 307.96 15.07 4.64 4.64 Total: -1.00 -28.99 307.96 -5.36 -34.35 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -1.31 Total: 8.70 kcal Atomic # 6 Polarization: 14.75 SS G_CDS: -0.88 Total: 13.87 kcal Atomic # 7 Polarization: -42.74 SS G_CDS: -0.10 Total: -42.84 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -0.38 Total: -27.71 kcal Atomic # 9 Polarization: -6.21 SS G_CDS: 0.12 Total: -6.10 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.64 kcal Atomic # 16 Polarization: 2.86 SS G_CDS: -2.43 Total: 0.43 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.99 -5.36 -34.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331616771.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.262 kcal (2) G-P(sol) polarization free energy of solvation -28.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds