Wall clock time and date at job start Tue Mar 31 2020 12:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 O 1.42904 * 112.94304 * 50.61622 * 9 7 2 11 11 C 1.53940 * 113.74765 * 279.01867 * 9 7 2 12 12 N 1.47807 * 86.04034 * 222.08636 * 11 9 7 13 13 C 1.34781 * 134.45550 * 204.64597 * 12 11 9 14 14 O 1.21628 * 119.99859 * 179.86686 * 13 12 11 15 15 C 1.47264 * 120.00017 * 359.86663 * 13 12 11 16 16 C 1.35205 * 123.14298 * 179.73306 * 15 13 12 17 17 S 1.70934 * 108.82992 * 179.90187 * 16 15 13 18 18 C 1.70769 * 91.13011 * 0.30241 * 17 16 15 19 19 C 1.50698 * 124.72364 * 179.82425 * 18 17 16 20 20 F 1.39901 * 109.46972 * 269.99787 * 19 18 17 21 21 F 1.39903 * 109.47204 * 29.99819 * 19 18 17 22 22 F 1.39897 * 109.47565 * 149.99554 * 19 18 17 23 23 N 1.28646 * 110.55815 * 359.82126 * 18 17 16 24 24 C 1.47571 * 91.05019 * 24.54809 * 12 11 9 25 25 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 26 26 H 0.96703 * 113.99734 * 309.65903 * 10 9 7 27 27 H 1.08997 * 113.76880 * 336.35532 * 11 9 7 28 28 H 1.09008 * 113.76856 * 107.74127 * 11 9 7 29 29 H 1.08004 * 125.58521 * 0.02562 * 16 15 13 30 30 H 1.09004 * 113.77444 * 221.15143 * 24 12 11 31 31 H 1.09004 * 113.87147 * 89.76886 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 8 0.2451 -2.5661 -1.0073 11 6 0.7559 -2.9227 1.4000 12 7 1.1919 -4.2852 1.0284 13 6 0.8425 -5.5273 1.4180 14 8 1.3864 -6.4956 0.9221 15 6 -0.1976 -5.7119 2.4439 16 6 -0.6006 -6.9274 2.8777 17 16 -1.8130 -6.7158 4.0639 18 6 -1.7185 -5.0181 3.9062 19 6 -2.5537 -4.0357 4.6862 20 9 -3.7346 -3.7679 3.9854 21 9 -2.8667 -4.5793 5.9367 22 9 -1.8354 -2.8480 4.8607 23 7 -0.8351 -4.6943 3.0289 24 6 2.1610 -3.7398 0.0582 25 1 -0.4850 0.8400 0.0004 26 1 -0.3471 -1.8018 -1.0246 27 1 1.3268 -2.4870 2.2200 28 1 -0.3218 -2.8255 1.5318 29 1 -0.2177 -7.8765 2.5327 30 1 2.2032 -4.2939 -0.8796 31 1 3.1463 -3.5443 0.4813 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331616771.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:10 Heat of formation + Delta-G solvation = -162.775093 kcal Electronic energy + Delta-G solvation = -25098.616601 eV Core-core repulsion = 20672.153308 eV Total energy + Delta-G solvation = -4426.463293 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 322.039 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -51.37993 -48.91927 -48.84887 -41.88654 -40.55626 -38.93560 -35.85160 -34.16107 -32.82011 -30.66206 -28.79930 -27.65029 -27.02612 -25.45203 -23.19447 -21.58486 -21.03085 -19.78766 -19.77351 -19.25230 -19.21661 -18.68151 -17.59404 -17.21144 -16.88535 -16.80671 -15.96008 -15.88439 -15.73813 -15.48236 -15.28295 -15.19665 -15.00071 -14.98655 -14.86297 -14.38681 -14.19008 -13.90257 -13.78684 -13.43445 -13.28741 -12.82798 -12.79314 -12.25224 -12.20802 -11.62319 -11.28310 -11.15593 -11.13297 -10.67036 -10.42704 -10.26014 -9.64427 -8.26581 -6.43912 -0.99420 -0.30159 0.12129 0.47127 1.11592 1.45104 1.48912 1.59729 1.86562 2.07030 2.21724 2.40572 2.81948 2.95674 3.06711 3.14809 3.59659 3.79000 3.86781 4.14262 4.29082 4.44272 4.57541 4.77471 4.89117 5.00783 5.21536 5.72109 5.90802 5.93521 6.61893 6.64452 6.94684 7.29008 7.40640 8.80046 Molecular weight = 322.04amu Principal moments of inertia in cm(-1) A = 0.014342 B = 0.004709 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.847649 B = 5944.943480 C = 7402.661313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.031 3.969 3 Si 0.970 3.030 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.555 4.555 8 H 0.075 0.925 9 C 0.216 3.784 10 O -0.585 6.585 11 C 0.113 3.887 12 N -0.619 5.619 13 C 0.596 3.404 14 O -0.579 6.579 15 C -0.012 4.012 16 C -0.200 4.200 17 S 0.438 5.562 18 C -0.138 4.138 19 C 0.560 3.440 20 F -0.164 7.164 21 F -0.152 7.152 22 F -0.167 7.167 23 N -0.410 5.410 24 C 0.116 3.884 25 H 0.275 0.725 26 H 0.387 0.613 27 H 0.080 0.920 28 H 0.063 0.937 29 H 0.223 0.777 30 H 0.069 0.931 31 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.707 -11.281 12.552 18.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.169 4.169 3 Si 0.795 3.205 4 H -0.189 1.189 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.593 4.593 8 H 0.093 0.907 9 C 0.175 3.825 10 O -0.397 6.397 11 C -0.010 4.010 12 N -0.349 5.349 13 C 0.384 3.616 14 O -0.461 6.461 15 C -0.148 4.148 16 C -0.343 4.343 17 S 0.694 5.306 18 C -0.415 4.415 19 C 0.502 3.498 20 F -0.145 7.145 21 F -0.133 7.133 22 F -0.148 7.148 23 N -0.127 5.127 24 C -0.006 4.006 25 H 0.085 0.915 26 H 0.241 0.759 27 H 0.098 0.902 28 H 0.082 0.918 29 H 0.240 0.760 30 H 0.087 0.913 31 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -6.886 -12.441 12.754 19.102 hybrid contribution 0.669 1.967 -0.701 2.193 sum -6.217 -10.474 12.054 17.136 Atomic orbital electron populations 1.69494 1.07230 1.28819 1.50122 1.25785 0.95755 1.02739 0.92658 0.85322 0.79037 0.78525 0.77630 1.18907 1.20598 1.20454 1.21731 0.94189 0.90600 1.52779 0.90698 1.20189 0.85908 0.92067 0.84371 1.86028 1.47518 1.49620 1.56517 1.23998 0.99905 0.76447 1.00600 1.50106 1.39243 1.05179 1.40408 1.17066 0.81776 0.81847 0.80932 1.90727 1.57357 1.39574 1.58485 1.20154 1.02790 0.88641 1.03241 1.27435 1.01642 1.03896 1.01311 1.82243 1.26675 0.94101 1.27585 1.27110 1.06059 1.01901 1.06466 1.16824 0.77305 0.78669 0.76993 1.93269 1.48298 1.94105 1.78866 1.93262 1.93112 1.85376 1.41531 1.93269 1.77953 1.48347 1.95240 1.66717 1.04801 1.35752 1.05403 1.23531 0.93877 0.91824 0.91323 0.91544 0.75917 0.90222 0.91815 0.75998 0.91298 0.87369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.92 11.21 21.45 0.24 -47.68 16 2 C 0.03 1.58 5.40 84.65 0.46 2.04 16 3 Si 0.97 40.32 29.54 68.60 2.03 42.34 16 4 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 5 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 6 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 7 C -0.55 -28.37 8.61 25.60 0.22 -28.15 16 8 H 0.07 3.69 7.81 -2.91 -0.02 3.66 16 9 C 0.22 10.76 1.40 -10.88 -0.02 10.75 16 10 O -0.59 -31.50 13.49 -148.98 -2.01 -33.51 16 11 C 0.11 5.30 7.15 86.44 0.62 5.92 16 12 N -0.62 -27.68 3.61 -843.73 -3.05 -30.72 16 13 C 0.60 25.01 8.03 86.62 0.70 25.70 16 14 O -0.58 -25.78 17.44 -4.12 -0.07 -25.85 16 15 C -0.01 -0.39 6.69 40.56 0.27 -0.12 16 16 C -0.20 -4.52 10.62 67.12 0.71 -3.81 16 17 S 0.44 6.83 22.57 -56.49 -1.28 5.55 16 18 C -0.14 -3.59 6.71 88.57 0.59 -3.00 16 19 C 0.56 13.92 3.55 71.24 0.25 14.18 16 20 F -0.16 -4.22 17.30 44.97 0.78 -3.44 16 21 F -0.15 -2.92 16.98 44.97 0.76 -2.15 16 22 F -0.17 -5.05 17.21 44.97 0.77 -4.27 16 23 N -0.41 -14.02 8.51 -180.84 -1.54 -15.56 16 24 C 0.12 5.18 8.23 86.49 0.71 5.89 16 25 H 0.27 13.59 8.31 -92.71 -0.77 12.82 16 26 H 0.39 21.18 6.61 -74.06 -0.49 20.69 16 27 H 0.08 3.68 8.09 -2.39 -0.02 3.66 16 28 H 0.06 3.16 7.33 -2.38 -0.02 3.14 16 29 H 0.22 3.93 8.03 -2.91 -0.02 3.90 16 30 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 31 H 0.11 4.33 8.09 -2.39 -0.02 4.31 16 Total: -1.00 -64.10 307.96 1.90 -62.20 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: 0.74 Total: 23.69 kcal Atomic # 6 Polarization: 24.88 SS G_CDS: 4.52 Total: 29.40 kcal Atomic # 7 Polarization: -89.62 SS G_CDS: -4.35 Total: -93.96 kcal Atomic # 8 Polarization: -57.28 SS G_CDS: -2.08 Total: -59.36 kcal Atomic # 9 Polarization: -12.18 SS G_CDS: 2.32 Total: -9.86 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 2.03 Total: 42.34 kcal Atomic # 16 Polarization: 6.83 SS G_CDS: -1.28 Total: 5.55 kcal Total: -64.10 1.90 -62.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331616771.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.577 kcal (2) G-P(sol) polarization free energy of solvation -64.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds