Wall clock time and date at job start Tue Mar 31 2020 13:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.36544 * 125.98365 * 349.59196 * 3 2 1 5 5 C 1.40471 * 106.70459 * 180.02562 * 4 3 2 6 6 C 1.35043 * 107.11145 * 0.02562 * 5 4 3 7 7 S 1.76204 * 125.62104 * 179.97438 * 6 5 4 8 8 O 1.42104 * 106.39598 * 336.45497 * 7 6 5 9 9 O 1.42098 * 106.40117 * 203.54085 * 7 6 5 10 10 N 1.65594 * 107.22039 * 89.99519 * 7 6 5 11 11 C 1.39989 * 119.99656 * 65.00173 * 10 7 6 12 12 C 1.40432 * 125.97226 * 180.02562 * 11 10 7 13 13 C 1.35251 * 107.86019 * 179.70499 * 12 11 10 14 14 N 1.34962 * 107.86128 * 0.42675 * 13 12 11 15 15 C 1.46500 * 125.97410 * 179.83595 * 14 13 12 16 16 C 1.50706 * 109.47299 * 124.71196 * 15 14 13 17 17 H 1.07998 * 119.99503 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00434 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99826 * 359.72891 * 18 16 15 20 20 Si 1.86800 * 120.00406 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47364 * 179.72558 * 20 18 16 22 22 H 1.48508 * 109.46883 * 299.72681 * 20 18 16 23 23 H 1.48497 * 109.46870 * 59.72491 * 20 18 16 24 24 N 1.31219 * 125.97824 * 359.97438 * 11 10 7 25 25 O 1.34058 * 108.76672 * 0.24188 * 6 5 4 26 26 H 1.08007 * 126.64903 * 359.97438 * 4 3 2 27 27 H 1.08008 * 126.44573 * 180.02562 * 5 4 3 28 28 H 0.96996 * 120.00453 * 245.00506 * 10 7 6 29 29 H 1.07997 * 126.07138 * 0.02562 * 12 11 10 30 30 H 1.07992 * 126.07316 * 180.25997 * 13 12 11 31 31 H 1.09004 * 109.47078 * 4.71958 * 15 14 13 32 32 H 1.08993 * 109.47364 * 244.71729 * 15 14 13 33 33 H 0.97000 * 120.00236 * 0.27947 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3708 -1.0857 0.1996 5 6 4.6965 -0.6289 0.1164 6 6 4.6449 0.6985 -0.1265 7 16 6.0369 1.7614 -0.3199 8 8 7.1196 1.1303 0.3500 9 8 5.5873 3.0725 -0.0066 10 7 6.4254 1.7724 -1.9296 11 6 5.5295 2.3083 -2.8622 12 6 5.7291 2.3811 -4.2503 13 6 4.6344 2.9572 -4.7972 14 7 3.7765 3.2484 -3.7969 15 6 2.4656 3.8852 -3.9455 16 6 1.4094 3.0137 -3.3160 17 1 1.6871 2.0792 -2.8513 18 6 0.0888 3.4094 -3.3333 19 7 -0.2486 4.5499 -3.8945 20 14 -1.2202 2.3295 -2.5524 21 1 -2.5483 2.9778 -2.6978 22 1 -1.2383 1.0069 -3.2276 23 1 -0.9145 2.1452 -1.1109 24 7 4.3559 2.8295 -2.5923 25 8 3.3600 1.0756 -0.1904 26 1 3.0489 -2.0997 0.3862 27 1 5.5893 -1.2268 0.2261 28 1 7.2737 1.4074 -2.2263 29 1 6.5998 2.0337 -4.7866 30 1 4.4761 3.1522 -5.8475 31 1 2.2437 4.0172 -5.0045 32 1 2.4758 4.8572 -3.4525 33 1 0.4311 5.1109 -4.2998 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340945357.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:11 Heat of formation + Delta-G solvation = 69.489536 kcal Electronic energy + Delta-G solvation = -24842.844505 eV Core-core repulsion = 21000.602454 eV Total energy + Delta-G solvation = -3842.242052 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 322.057 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.89550 -40.70359 -37.46029 -36.69023 -36.06021 -35.49409 -33.67334 -33.50908 -30.78042 -30.62789 -29.62596 -26.35744 -24.14034 -23.26276 -22.42075 -21.15364 -20.90723 -19.68415 -19.27173 -18.00564 -17.62684 -17.27650 -16.97022 -16.41069 -15.53991 -14.96549 -14.70066 -14.46044 -14.07644 -13.92434 -13.48474 -13.48220 -13.37926 -13.26805 -13.21261 -12.74413 -12.61590 -12.38987 -12.23293 -12.03385 -11.91348 -11.65154 -11.36896 -11.12330 -10.72742 -10.41403 -10.14742 -10.09252 -9.28122 -9.11660 -8.60922 -8.53907 -7.81887 -6.61534 -4.36127 -0.07643 0.52655 1.72721 1.89909 2.47420 2.53424 2.91380 3.10214 3.19343 3.32427 3.36181 3.43292 3.54027 3.57242 3.87257 4.37380 4.44187 4.50497 4.78814 5.02517 5.14246 5.16171 5.22701 5.29544 5.83735 5.86338 5.95799 6.09026 6.36588 6.47734 6.61657 6.81320 7.11132 7.20198 7.56472 7.65709 8.24938 8.27702 8.56391 9.31045 10.76604 Molecular weight = 322.06amu Principal moments of inertia in cm(-1) A = 0.011467 B = 0.006623 C = 0.004606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2441.296354 B = 4226.830639 C = 6078.190819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.344 5.344 2 C 0.274 3.726 3 C 0.108 3.892 4 C -0.157 4.157 5 C -0.095 4.095 6 C -0.539 4.539 7 S 2.720 3.280 8 O -0.935 6.935 9 O -0.904 6.904 10 N -1.004 6.004 11 C 0.266 3.734 12 C -0.299 4.299 13 C 0.067 3.933 14 N -0.308 5.308 15 C 0.248 3.752 16 C -0.606 4.606 17 H 0.062 0.938 18 C 0.029 3.971 19 N -0.903 5.903 20 Si 1.058 2.942 21 H -0.279 1.279 22 H -0.287 1.287 23 H -0.273 1.273 24 N -0.289 5.289 25 O -0.068 6.068 26 H 0.173 0.827 27 H 0.178 0.822 28 H 0.434 0.566 29 H 0.144 0.856 30 H 0.172 0.828 31 H 0.049 0.951 32 H 0.039 0.961 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.336 -10.738 3.097 18.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.022 5.022 2 C -0.042 4.042 3 C 0.050 3.950 4 C -0.180 4.180 5 C -0.117 4.117 6 C -0.672 4.672 7 S 2.802 3.198 8 O -0.925 6.925 9 O -0.894 6.894 10 N -0.761 5.761 11 C 0.010 3.990 12 C -0.332 4.332 13 C -0.083 4.083 14 N -0.089 5.089 15 C 0.130 3.870 16 C -0.644 4.644 17 H 0.080 0.920 18 C -0.177 4.177 19 N -0.538 5.538 20 Si 0.885 3.115 21 H -0.204 1.204 22 H -0.214 1.214 23 H -0.199 1.199 24 N -0.120 5.120 25 O 0.043 5.957 26 H 0.191 0.809 27 H 0.195 0.805 28 H 0.272 0.728 29 H 0.161 0.839 30 H 0.189 0.811 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.125 -9.643 5.015 14.854 hybrid contribution 2.571 -0.924 -1.492 3.113 sum 12.695 -10.568 3.523 16.890 Atomic orbital electron populations 1.81339 1.10267 1.04192 1.06385 1.23450 0.89543 0.96000 0.95211 1.17280 0.85280 0.87162 1.05276 1.22009 0.91477 0.99499 1.04983 1.21847 0.99298 0.92611 0.97894 1.36008 0.99571 1.11780 1.19848 1.01849 0.72158 0.73782 0.72009 1.93676 1.49321 1.78365 1.71097 1.93686 1.81073 1.33712 1.80889 1.52475 1.26420 1.72578 1.24578 1.18701 0.91011 0.99971 0.89321 1.20837 1.02893 1.18048 0.91449 1.22474 0.90545 0.99638 0.95693 1.48847 1.15557 1.42957 1.01526 1.19852 0.75082 0.93867 0.98223 1.22005 0.92783 1.08095 1.41526 0.92005 1.25779 0.98376 0.97863 0.95634 1.70852 1.37547 1.10939 1.34476 0.83694 0.75890 0.74769 0.77139 1.20411 1.21350 1.19894 1.77567 1.06636 1.20790 1.06978 1.84496 1.13350 1.32019 1.65787 0.80918 0.80496 0.72810 0.83852 0.81066 0.93373 0.94286 0.92180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.34 -6.50 17.83 41.84 0.75 -5.75 16 2 C 0.27 4.71 15.89 -22.47 -0.36 4.36 16 3 C 0.11 1.68 7.08 -38.27 -0.27 1.41 16 4 C -0.16 -1.76 10.84 -39.35 -0.43 -2.19 16 5 C -0.10 -1.06 10.59 -39.88 -0.42 -1.48 16 6 C -0.54 -7.94 7.29 29.60 0.22 -7.72 16 7 S 2.72 39.05 5.65 -107.50 -0.61 38.45 16 8 O -0.93 -12.51 17.83 -57.17 -1.02 -13.53 16 9 O -0.90 -17.07 17.23 -57.26 -0.99 -18.05 16 10 N -1.00 -12.89 5.91 31.39 0.19 -12.71 16 11 C 0.27 4.55 7.72 -154.55 -1.19 3.36 16 12 C -0.30 -4.50 10.83 -39.82 -0.43 -4.93 16 13 C 0.07 1.13 11.44 -17.24 -0.20 0.94 16 14 N -0.31 -6.64 3.67 -62.56 -0.23 -6.87 16 15 C 0.25 6.01 5.57 -5.19 -0.03 5.99 16 16 C -0.61 -16.71 9.24 -34.44 -0.32 -17.03 16 17 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 18 C 0.03 0.81 5.46 -17.82 -0.10 0.71 16 19 N -0.90 -26.36 13.65 55.43 0.76 -25.60 16 20 Si 1.06 26.05 29.90 -169.99 -5.08 20.97 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.27 -6.58 6.39 56.52 0.36 -6.22 16 24 N -0.29 -6.25 11.46 31.41 0.36 -5.89 16 25 O -0.07 -1.23 10.67 4.79 0.05 -1.18 16 26 H 0.17 1.26 8.06 -52.48 -0.42 0.84 16 27 H 0.18 1.27 8.06 -52.48 -0.42 0.84 16 28 H 0.43 3.58 8.95 -34.47 -0.31 3.27 16 29 H 0.14 1.60 8.06 -52.49 -0.42 1.17 16 30 H 0.17 2.22 8.06 -52.49 -0.42 1.80 16 31 H 0.05 1.11 7.94 -51.93 -0.41 0.70 16 32 H 0.04 1.01 8.00 -51.93 -0.42 0.59 16 33 H 0.27 7.56 7.22 -40.82 -0.29 7.27 16 LS Contribution 328.49 15.07 4.95 4.95 Total: -1.00 -36.28 328.49 -6.77 -43.05 By element: Atomic # 1 Polarization: 1.13 SS G_CDS: -2.37 Total: -1.24 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: -3.53 Total: -16.58 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: 1.82 Total: -56.83 kcal Atomic # 8 Polarization: -30.81 SS G_CDS: -1.95 Total: -32.76 kcal Atomic # 14 Polarization: 26.05 SS G_CDS: -5.08 Total: 20.97 kcal Atomic # 16 Polarization: 39.05 SS G_CDS: -0.61 Total: 38.45 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -36.28 -6.77 -43.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340945357.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.536 kcal (2) G-P(sol) polarization free energy of solvation -36.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds