Wall clock time and date at job start Tue Mar 31 2020 13:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.36544 * 125.98365 * 349.59196 * 3 2 1 5 5 C 1.40471 * 106.70459 * 180.02562 * 4 3 2 6 6 C 1.35043 * 107.11145 * 0.02562 * 5 4 3 7 7 S 1.76204 * 125.62104 * 179.97438 * 6 5 4 8 8 O 1.42104 * 106.39598 * 336.45497 * 7 6 5 9 9 O 1.42098 * 106.40117 * 203.54085 * 7 6 5 10 10 N 1.65594 * 107.22039 * 89.99519 * 7 6 5 11 11 C 1.39989 * 119.99656 * 65.00173 * 10 7 6 12 12 C 1.40432 * 125.97226 * 180.02562 * 11 10 7 13 13 C 1.35251 * 107.86019 * 179.70499 * 12 11 10 14 14 N 1.34962 * 107.86128 * 0.42675 * 13 12 11 15 15 C 1.46500 * 125.97410 * 179.83595 * 14 13 12 16 16 C 1.50706 * 109.47299 * 124.71196 * 15 14 13 17 17 H 1.07998 * 119.99503 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00434 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99826 * 359.72891 * 18 16 15 20 20 Si 1.86800 * 120.00406 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47364 * 179.72558 * 20 18 16 22 22 H 1.48508 * 109.46883 * 299.72681 * 20 18 16 23 23 H 1.48497 * 109.46870 * 59.72491 * 20 18 16 24 24 N 1.31219 * 125.97824 * 359.97438 * 11 10 7 25 25 O 1.34058 * 108.76672 * 0.24188 * 6 5 4 26 26 H 1.08007 * 126.64903 * 359.97438 * 4 3 2 27 27 H 1.08008 * 126.44573 * 180.02562 * 5 4 3 28 28 H 0.96996 * 120.00453 * 245.00506 * 10 7 6 29 29 H 1.07997 * 126.07138 * 0.02562 * 12 11 10 30 30 H 1.07992 * 126.07316 * 180.25997 * 13 12 11 31 31 H 1.09004 * 109.47078 * 4.71958 * 15 14 13 32 32 H 1.08993 * 109.47364 * 244.71729 * 15 14 13 33 33 H 0.97000 * 120.00236 * 0.27947 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3708 -1.0857 0.1996 5 6 4.6965 -0.6289 0.1164 6 6 4.6449 0.6985 -0.1265 7 16 6.0369 1.7614 -0.3199 8 8 7.1196 1.1303 0.3500 9 8 5.5873 3.0725 -0.0066 10 7 6.4254 1.7724 -1.9296 11 6 5.5295 2.3083 -2.8622 12 6 5.7291 2.3811 -4.2503 13 6 4.6344 2.9572 -4.7972 14 7 3.7765 3.2484 -3.7969 15 6 2.4656 3.8852 -3.9455 16 6 1.4094 3.0137 -3.3160 17 1 1.6871 2.0792 -2.8513 18 6 0.0888 3.4094 -3.3333 19 7 -0.2486 4.5499 -3.8945 20 14 -1.2202 2.3295 -2.5524 21 1 -2.5483 2.9778 -2.6978 22 1 -1.2383 1.0069 -3.2276 23 1 -0.9145 2.1452 -1.1109 24 7 4.3559 2.8295 -2.5923 25 8 3.3600 1.0756 -0.1904 26 1 3.0489 -2.0997 0.3862 27 1 5.5893 -1.2268 0.2261 28 1 7.2737 1.4074 -2.2263 29 1 6.5998 2.0337 -4.7866 30 1 4.4761 3.1522 -5.8475 31 1 2.2437 4.0172 -5.0045 32 1 2.4758 4.8572 -3.4525 33 1 0.4311 5.1109 -4.2998 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340945357.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:11 Heat of formation + Delta-G solvation = 41.702756 kcal Electronic energy + Delta-G solvation = -24844.049431 eV Core-core repulsion = 21000.602454 eV Total energy + Delta-G solvation = -3843.446977 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 322.057 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.98015 -42.08513 -38.63861 -38.04104 -37.29499 -36.87527 -35.57817 -34.54865 -32.44686 -31.71632 -30.99180 -28.15768 -25.28712 -25.16305 -23.42302 -22.54927 -22.22924 -20.74617 -20.48598 -19.35306 -19.09009 -18.78824 -18.30844 -17.58087 -16.97175 -16.30647 -16.09998 -15.82537 -15.75267 -15.13455 -15.02592 -14.81523 -14.76276 -14.49997 -14.35668 -14.21738 -13.82932 -13.68586 -13.56846 -13.42730 -13.34456 -13.23517 -12.91877 -12.71482 -12.53229 -12.09355 -11.48671 -11.38086 -11.09695 -10.75428 -10.38210 -9.94873 -9.28560 -8.80830 -6.57002 -1.19640 -0.60454 0.66955 0.77829 1.11262 1.30025 1.35623 1.43581 1.59517 1.72550 1.84913 1.94635 2.00917 2.33894 2.38077 2.74423 2.95806 3.38201 3.55831 3.57680 3.98713 4.06676 4.18344 4.37026 4.54567 4.67131 4.77955 4.83596 4.96030 5.02333 5.44822 5.49695 5.71793 5.87010 5.90679 5.95184 6.27752 6.41405 6.88133 7.15267 8.56386 Molecular weight = 322.06amu Principal moments of inertia in cm(-1) A = 0.011467 B = 0.006623 C = 0.004606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2441.296354 B = 4226.830639 C = 6078.190819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C 0.289 3.711 3 C 0.064 3.936 4 C -0.116 4.116 5 C -0.070 4.070 6 C -0.564 4.564 7 S 2.740 3.260 8 O -0.923 6.923 9 O -0.958 6.958 10 N -0.986 5.986 11 C 0.272 3.728 12 C -0.280 4.280 13 C 0.063 3.937 14 N -0.343 5.343 15 C 0.260 3.740 16 C -0.607 4.607 17 H 0.044 0.956 18 C -0.010 4.010 19 N -0.926 5.926 20 Si 1.089 2.911 21 H -0.276 1.276 22 H -0.274 1.274 23 H -0.273 1.273 24 N -0.348 5.348 25 O -0.115 6.115 26 H 0.219 0.781 27 H 0.226 0.774 28 H 0.456 0.544 29 H 0.193 0.807 30 H 0.207 0.793 31 H 0.061 0.939 32 H 0.012 0.988 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.091 -13.614 2.531 21.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.067 5.067 2 C -0.027 4.027 3 C 0.007 3.993 4 C -0.139 4.139 5 C -0.091 4.091 6 C -0.697 4.697 7 S 2.823 3.177 8 O -0.912 6.912 9 O -0.948 6.948 10 N -0.746 5.746 11 C 0.014 3.986 12 C -0.313 4.313 13 C -0.085 4.085 14 N -0.125 5.125 15 C 0.140 3.860 16 C -0.645 4.645 17 H 0.063 0.937 18 C -0.211 4.211 19 N -0.563 5.563 20 Si 0.912 3.088 21 H -0.201 1.201 22 H -0.200 1.200 23 H -0.199 1.199 24 N -0.178 5.178 25 O -0.007 6.007 26 H 0.236 0.764 27 H 0.242 0.758 28 H 0.299 0.701 29 H 0.210 0.790 30 H 0.224 0.776 31 H 0.079 0.921 32 H 0.030 0.970 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 12.952 -12.542 4.432 18.566 hybrid contribution 1.952 -0.126 -1.284 2.340 sum 14.904 -12.668 3.148 19.812 Atomic orbital electron populations 1.81317 1.11444 1.05505 1.08427 1.23822 0.90141 0.94820 0.93869 1.17631 0.84690 0.88310 1.08674 1.22624 0.90569 1.00049 1.00638 1.22507 1.00818 0.91142 0.94630 1.36050 0.98626 1.13516 1.21534 1.01060 0.71824 0.72823 0.72031 1.93681 1.48734 1.77874 1.70957 1.93632 1.82023 1.37120 1.81981 1.52245 1.26777 1.72088 1.23461 1.19043 0.90222 0.98346 0.90955 1.21372 1.03522 1.16036 0.90368 1.23265 0.89955 0.98660 0.96620 1.48503 1.15603 1.45519 1.02877 1.19382 0.76384 0.92259 0.97985 1.22211 0.93781 1.07734 1.40821 0.93725 1.26712 1.00300 0.98287 0.95775 1.70914 1.37597 1.11701 1.36061 0.83293 0.74465 0.74328 0.76738 1.20093 1.19977 1.19885 1.77485 1.09089 1.23261 1.07978 1.84444 1.14782 1.33802 1.67656 0.76392 0.75755 0.70143 0.79026 0.77631 0.92089 0.96989 0.92539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -15.03 17.83 19.01 0.34 -14.69 16 2 C 0.29 10.10 15.89 88.33 1.40 11.50 16 3 C 0.06 1.94 7.08 23.12 0.16 2.11 16 4 C -0.12 -2.20 10.84 22.42 0.24 -1.96 16 5 C -0.07 -1.28 10.59 22.08 0.23 -1.04 16 6 C -0.56 -15.78 7.29 67.08 0.49 -15.29 16 7 S 2.74 75.02 5.65 -56.49 -0.32 74.70 16 8 O -0.92 -22.07 17.83 -128.00 -2.28 -24.35 16 9 O -0.96 -37.03 17.23 -127.91 -2.20 -39.24 16 10 N -0.99 -22.86 5.91 -54.61 -0.32 -23.19 16 11 C 0.27 8.82 7.72 133.39 1.03 9.85 16 12 C -0.28 -7.47 10.83 22.12 0.24 -7.23 16 13 C 0.06 1.98 11.44 83.52 0.96 2.94 16 14 N -0.34 -14.87 3.67 -351.84 -1.29 -16.16 16 15 C 0.26 13.02 5.57 85.64 0.48 13.49 16 16 C -0.61 -34.59 9.24 25.60 0.24 -34.35 16 17 H 0.04 2.65 7.81 -2.91 -0.02 2.63 16 18 C -0.01 -0.58 5.46 84.65 0.46 -0.11 16 19 N -0.93 -55.44 13.65 21.45 0.29 -55.15 16 20 Si 1.09 53.97 29.90 68.60 2.05 56.03 16 21 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 22 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 23 H -0.27 -13.44 6.39 99.48 0.64 -12.81 16 24 N -0.35 -15.17 11.46 -54.54 -0.63 -15.80 16 25 O -0.12 -4.25 10.67 -5.78 -0.06 -4.31 16 26 H 0.22 1.99 8.06 -2.91 -0.02 1.97 16 27 H 0.23 1.78 8.06 -2.91 -0.02 1.75 16 28 H 0.46 5.77 8.95 -96.75 -0.87 4.91 16 29 H 0.19 3.14 8.06 -2.91 -0.02 3.11 16 30 H 0.21 4.71 8.06 -2.91 -0.02 4.69 16 31 H 0.06 2.86 7.94 -2.39 -0.02 2.84 16 32 H 0.01 0.66 8.00 -2.39 -0.02 0.64 16 33 H 0.26 15.45 7.22 -92.71 -0.67 14.78 16 Total: -1.00 -84.51 328.49 1.87 -82.64 By element: Atomic # 1 Polarization: -0.74 SS G_CDS: 0.36 Total: -0.39 kcal Atomic # 6 Polarization: -26.03 SS G_CDS: 5.93 Total: -20.09 kcal Atomic # 7 Polarization: -123.38 SS G_CDS: -1.61 Total: -124.99 kcal Atomic # 8 Polarization: -63.35 SS G_CDS: -4.55 Total: -67.90 kcal Atomic # 14 Polarization: 53.97 SS G_CDS: 2.05 Total: 56.03 kcal Atomic # 16 Polarization: 75.02 SS G_CDS: -0.32 Total: 74.70 kcal Total: -84.51 1.87 -82.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340945357.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.344 kcal (2) G-P(sol) polarization free energy of solvation -84.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds