Wall clock time and date at job start Tue Mar 31 2020 13:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86808 * 119.99923 * 2 1 4 4 H 1.48500 * 109.47059 * 270.00229 * 3 2 1 5 5 H 1.48496 * 109.47123 * 30.00295 * 3 2 1 6 6 H 1.48498 * 109.46853 * 150.00277 * 3 2 1 7 7 C 1.37872 * 120.00320 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00456 * 179.97438 * 7 2 1 9 9 C 1.50710 * 119.99861 * 359.97438 * 7 2 1 10 10 N 1.46495 * 109.47161 * 179.97438 * 9 7 2 11 11 C 1.46503 * 120.00232 * 262.79904 * 10 9 7 12 12 C 1.53005 * 109.46728 * 274.89088 * 11 10 9 13 13 F 1.39892 * 109.47202 * 60.00043 * 12 11 10 14 14 F 1.39904 * 109.46924 * 180.02562 * 12 11 10 15 15 F 1.39906 * 109.47056 * 299.99850 * 12 11 10 16 16 C 1.34779 * 119.99784 * 82.79856 * 10 9 7 17 17 O 1.21521 * 119.99850 * 183.26788 * 16 10 9 18 18 C 1.48077 * 120.00166 * 3.26641 * 16 10 9 19 19 N 1.32782 * 119.73639 * 353.90742 * 18 16 10 20 20 C 1.31465 * 121.65458 * 179.97438 * 19 18 16 21 21 C 1.38642 * 120.94268 * 0.02562 * 20 19 18 22 22 C 1.38517 * 119.37318 * 0.27133 * 21 20 19 23 23 C 1.38798 * 118.47631 * 359.44318 * 22 21 20 24 24 Cl 1.73601 * 120.48932 * 180.25551 * 23 22 21 25 25 H 0.96996 * 119.99600 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.46915 * 59.99871 * 9 7 2 27 27 H 1.08997 * 109.46836 * 300.00172 * 9 7 2 28 28 H 1.08993 * 109.47199 * 34.88613 * 11 10 9 29 29 H 1.08994 * 109.47006 * 154.89208 * 11 10 9 30 30 H 1.08001 * 119.52688 * 180.02562 * 20 19 18 31 31 H 1.08006 * 120.31463 * 180.02562 * 21 20 19 32 32 H 1.08000 * 120.76057 * 179.71931 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6126 -0.0018 11 6 2.5573 -4.2722 -1.2611 12 6 1.5217 -5.3526 -1.5797 13 9 0.2576 -4.7658 -1.7001 14 9 1.8603 -5.9829 -2.7820 15 9 1.5010 -6.2974 -0.5481 16 6 2.7531 -4.0302 1.1557 17 8 3.5872 -4.9140 1.1480 18 6 2.3411 -3.4122 2.4366 19 7 1.5220 -2.3671 2.4303 20 6 1.1317 -1.7896 3.5450 21 6 1.5647 -2.2535 4.7776 22 6 2.4251 -3.3377 4.8316 23 6 2.8163 -3.9321 3.6399 24 17 3.8877 -5.2980 3.6469 25 1 -0.4849 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6248 -2.5571 0.8897 28 1 2.5734 -3.5362 -2.0647 29 1 3.5422 -4.7294 -1.1672 30 1 0.4643 -0.9417 3.4998 31 1 1.2374 -1.7716 5.6871 32 1 2.7799 -3.7147 5.7794 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341333968.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:30 Heat of formation + Delta-G solvation = -126.941819 kcal Electronic energy + Delta-G solvation = -25916.473998 eV Core-core repulsion = 21489.520846 eV Total energy + Delta-G solvation = -4426.953152 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 322.044 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.64778 -47.20487 -47.09030 -40.32938 -38.51234 -36.30692 -35.27713 -32.69808 -32.29610 -30.97409 -29.26336 -26.93872 -24.54893 -23.38172 -22.96323 -22.51899 -19.76699 -18.15333 -18.09162 -17.25765 -16.94887 -16.70653 -16.10810 -16.00055 -15.11535 -14.88828 -14.60090 -14.28843 -14.04682 -14.00881 -13.58502 -13.38667 -13.30405 -13.26570 -13.24527 -13.03041 -12.34731 -12.11637 -11.92613 -11.77969 -11.66596 -11.36770 -11.03761 -10.95652 -10.72539 -10.21819 -9.78512 -9.59332 -9.36507 -8.71507 -8.66483 -8.24111 -7.89886 -6.07796 -4.07867 0.86408 1.35842 2.33591 2.95839 3.23083 3.25758 3.31513 3.37241 3.46781 4.12329 4.31893 4.38664 4.47493 4.57471 4.73621 4.91391 4.97590 5.10568 5.28423 5.43044 5.55219 5.62175 5.73269 5.99781 6.14156 6.50513 6.66526 7.40183 7.61979 7.82266 8.02483 8.18784 8.19677 8.66218 8.92728 9.52055 11.00289 Molecular weight = 322.04amu Principal moments of inertia in cm(-1) A = 0.008924 B = 0.008121 C = 0.004839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3136.935051 B = 3447.086568 C = 5784.818493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.070 3.930 3 Si 0.885 3.115 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.503 4.503 8 H 0.052 0.948 9 C 0.223 3.777 10 N -0.577 5.577 11 C 0.078 3.922 12 C 0.432 3.568 13 F -0.177 7.177 14 F -0.190 7.190 15 F -0.182 7.182 16 C 0.569 3.431 17 O -0.534 6.534 18 C 0.091 3.909 19 N -0.363 5.363 20 C 0.095 3.905 21 C -0.146 4.146 22 C -0.092 4.092 23 C -0.045 4.045 24 Cl -0.033 7.033 25 H 0.261 0.739 26 H 0.034 0.966 27 H 0.089 0.911 28 H 0.124 0.876 29 H 0.120 0.880 30 H 0.166 0.834 31 H 0.141 0.859 32 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.094 -6.148 6.053 8.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.132 4.132 3 Si 0.714 3.286 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.543 4.543 8 H 0.071 0.929 9 C 0.104 3.896 10 N -0.307 5.307 11 C -0.049 4.049 12 C 0.376 3.624 13 F -0.159 7.159 14 F -0.171 7.171 15 F -0.163 7.163 16 C 0.356 3.644 17 O -0.411 6.411 18 C -0.048 4.048 19 N -0.074 5.074 20 C -0.064 4.064 21 C -0.166 4.166 22 C -0.118 4.118 23 C -0.075 4.075 24 Cl -0.004 7.004 25 H 0.071 0.929 26 H 0.052 0.948 27 H 0.106 0.894 28 H 0.142 0.858 29 H 0.138 0.862 30 H 0.183 0.817 31 H 0.159 0.841 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.149 -6.313 5.226 8.472 hybrid contribution 0.576 0.641 0.737 1.134 sum 2.725 -5.671 5.962 8.668 Atomic orbital electron populations 1.69931 1.05677 1.26613 1.50371 1.24745 0.94669 0.98379 0.95385 0.86709 0.79893 0.83868 0.78171 1.20762 1.21196 1.20192 1.21220 0.92819 0.90318 1.49913 0.92928 1.20371 0.87453 0.81213 1.00526 1.48162 1.45034 1.34255 1.03274 1.22471 0.96896 0.94396 0.91157 1.21519 0.83447 0.83548 0.73901 1.93205 1.43388 1.83644 1.95656 1.93142 1.92303 1.84182 1.47501 1.93187 1.96688 1.67377 1.59073 1.17828 0.81392 0.81805 0.83341 1.90796 1.32610 1.31058 1.86616 1.21035 0.96863 0.94459 0.92463 1.68982 1.06164 1.03794 1.28432 1.23256 0.97430 0.98606 0.87125 1.22402 0.97510 0.96496 1.00222 1.21394 0.97522 0.95930 0.96966 1.22015 0.97176 0.93443 0.94849 1.98389 1.62290 1.41011 1.98710 0.92912 0.94834 0.89398 0.85825 0.86162 0.81683 0.84141 0.83939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.36 13.29 55.43 0.74 -22.62 16 2 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.89 20.10 29.54 -169.99 -5.02 15.08 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 7 C -0.50 -12.60 8.00 -34.44 -0.28 -12.88 16 8 H 0.05 1.37 7.81 -52.49 -0.41 0.96 16 9 C 0.22 5.18 4.47 -5.19 -0.02 5.16 16 10 N -0.58 -11.98 2.40 -176.09 -0.42 -12.40 16 11 C 0.08 1.35 5.49 -4.04 -0.02 1.33 16 12 C 0.43 7.47 3.29 37.16 0.12 7.60 16 13 F -0.18 -3.33 15.90 2.25 0.04 -3.29 16 14 F -0.19 -2.99 17.32 2.25 0.04 -2.95 16 15 F -0.18 -3.39 16.99 2.25 0.04 -3.35 16 16 C 0.57 11.93 7.31 -12.22 -0.09 11.84 16 17 O -0.53 -11.31 13.47 5.35 0.07 -11.24 16 18 C 0.09 1.79 6.63 -82.98 -0.55 1.24 16 19 N -0.36 -7.26 5.00 -9.78 -0.05 -7.31 16 20 C 0.09 1.53 11.18 -17.56 -0.20 1.34 16 21 C -0.15 -1.84 10.11 -39.33 -0.40 -2.24 16 22 C -0.09 -1.22 9.98 -39.27 -0.39 -1.61 16 23 C -0.04 -0.75 6.37 -38.93 -0.25 -1.00 16 24 Cl -0.03 -0.54 26.06 -51.86 -1.35 -1.89 16 25 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 26 H 0.03 0.83 6.98 -51.93 -0.36 0.47 16 27 H 0.09 2.15 5.21 -52.64 -0.27 1.88 16 28 H 0.12 1.98 8.11 -51.93 -0.42 1.55 16 29 H 0.12 1.96 7.24 -51.93 -0.38 1.58 16 30 H 0.17 2.48 8.06 -52.49 -0.42 2.06 16 31 H 0.14 1.23 8.06 -52.48 -0.42 0.81 16 32 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 307.40 15.07 4.63 4.63 Total: -1.00 -28.62 307.40 -5.71 -34.33 By element: Atomic # 1 Polarization: 0.81 SS G_CDS: -2.25 Total: -1.44 kcal Atomic # 6 Polarization: 14.64 SS G_CDS: -2.17 Total: 12.47 kcal Atomic # 7 Polarization: -42.60 SS G_CDS: 0.27 Total: -42.34 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.07 Total: -11.24 kcal Atomic # 9 Polarization: -9.71 SS G_CDS: 0.11 Total: -9.60 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.35 Total: -1.89 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -28.62 -5.71 -34.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341333968.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.615 kcal (2) G-P(sol) polarization free energy of solvation -28.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds