Wall clock time and date at job start Tue Mar 31 2020 13:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86808 * 119.99923 * 2 1 4 4 H 1.48500 * 109.47059 * 270.00229 * 3 2 1 5 5 H 1.48496 * 109.47123 * 30.00295 * 3 2 1 6 6 H 1.48498 * 109.46853 * 150.00277 * 3 2 1 7 7 C 1.37872 * 120.00320 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00456 * 179.97438 * 7 2 1 9 9 C 1.50710 * 119.99861 * 359.97438 * 7 2 1 10 10 N 1.46495 * 109.47161 * 179.97438 * 9 7 2 11 11 C 1.46503 * 120.00232 * 262.79904 * 10 9 7 12 12 C 1.53005 * 109.46728 * 274.89088 * 11 10 9 13 13 F 1.39892 * 109.47202 * 60.00043 * 12 11 10 14 14 F 1.39904 * 109.46924 * 180.02562 * 12 11 10 15 15 F 1.39906 * 109.47056 * 299.99850 * 12 11 10 16 16 C 1.34779 * 119.99784 * 82.79856 * 10 9 7 17 17 O 1.21521 * 119.99850 * 183.26788 * 16 10 9 18 18 C 1.48077 * 120.00166 * 3.26641 * 16 10 9 19 19 N 1.32782 * 119.73639 * 353.90742 * 18 16 10 20 20 C 1.31465 * 121.65458 * 179.97438 * 19 18 16 21 21 C 1.38642 * 120.94268 * 0.02562 * 20 19 18 22 22 C 1.38517 * 119.37318 * 0.27133 * 21 20 19 23 23 C 1.38798 * 118.47631 * 359.44318 * 22 21 20 24 24 Cl 1.73601 * 120.48932 * 180.25551 * 23 22 21 25 25 H 0.96996 * 119.99600 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.46915 * 59.99871 * 9 7 2 27 27 H 1.08997 * 109.46836 * 300.00172 * 9 7 2 28 28 H 1.08993 * 109.47199 * 34.88613 * 11 10 9 29 29 H 1.08994 * 109.47006 * 154.89208 * 11 10 9 30 30 H 1.08001 * 119.52688 * 180.02562 * 20 19 18 31 31 H 1.08006 * 120.31463 * 180.02562 * 21 20 19 32 32 H 1.08000 * 120.76057 * 179.71931 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6126 -0.0018 11 6 2.5573 -4.2722 -1.2611 12 6 1.5217 -5.3526 -1.5797 13 9 0.2576 -4.7658 -1.7001 14 9 1.8603 -5.9829 -2.7820 15 9 1.5010 -6.2974 -0.5481 16 6 2.7531 -4.0302 1.1557 17 8 3.5872 -4.9140 1.1480 18 6 2.3411 -3.4122 2.4366 19 7 1.5220 -2.3671 2.4303 20 6 1.1317 -1.7896 3.5450 21 6 1.5647 -2.2535 4.7776 22 6 2.4251 -3.3377 4.8316 23 6 2.8163 -3.9321 3.6399 24 17 3.8877 -5.2980 3.6469 25 1 -0.4849 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6248 -2.5571 0.8897 28 1 2.5734 -3.5362 -2.0647 29 1 3.5422 -4.7294 -1.1672 30 1 0.4643 -0.9417 3.4998 31 1 1.2374 -1.7716 5.6871 32 1 2.7799 -3.7147 5.7794 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341333968.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:29 Heat of formation + Delta-G solvation = -142.194251 kcal Electronic energy + Delta-G solvation = -25917.135393 eV Core-core repulsion = 21489.520846 eV Total energy + Delta-G solvation = -4427.614547 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 322.044 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -51.08321 -48.60202 -48.57350 -41.69787 -39.95542 -37.60562 -36.87364 -34.51689 -33.59326 -32.26757 -30.77582 -28.71418 -25.92803 -24.88843 -24.50525 -23.89758 -21.22013 -19.59427 -19.52995 -18.82143 -18.52340 -18.02502 -17.82060 -17.24041 -16.57936 -16.42239 -16.22652 -15.75538 -15.47112 -15.42928 -15.01880 -14.80548 -14.75116 -14.70818 -14.59780 -14.41675 -14.10671 -13.51454 -13.33376 -13.28594 -13.00530 -12.91797 -12.75192 -12.58383 -12.25926 -12.05382 -11.64818 -10.88624 -10.78526 -10.46713 -10.02313 -9.79580 -9.50821 -8.01756 -6.07141 -0.41107 0.20020 1.08358 1.43040 1.47042 1.52337 1.53510 1.81559 2.01957 2.50000 2.78134 2.93657 3.03931 3.18826 3.32299 3.36628 3.70780 3.83076 3.99661 4.09360 4.32568 4.37462 4.48952 4.83049 4.89279 5.03106 5.44472 5.56717 5.84261 5.93037 6.27719 6.34381 6.81729 6.99350 7.16188 7.55760 9.06035 Molecular weight = 322.04amu Principal moments of inertia in cm(-1) A = 0.008924 B = 0.008121 C = 0.004839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3136.935051 B = 3447.086568 C = 5784.818493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.036 3.964 3 Si 0.938 3.062 4 H -0.282 1.282 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.503 4.503 8 H 0.038 0.962 9 C 0.241 3.759 10 N -0.586 5.586 11 C 0.075 3.925 12 C 0.439 3.561 13 F -0.187 7.187 14 F -0.178 7.178 15 F -0.190 7.190 16 C 0.562 3.438 17 O -0.545 6.545 18 C 0.054 3.946 19 N -0.405 5.405 20 C 0.076 3.924 21 C -0.114 4.114 22 C -0.080 4.080 23 C -0.052 4.052 24 Cl -0.035 7.035 25 H 0.262 0.738 26 H 0.013 0.987 27 H 0.080 0.920 28 H 0.136 0.864 29 H 0.132 0.868 30 H 0.170 0.830 31 H 0.192 0.808 32 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.533 -5.695 7.974 10.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.164 4.164 3 Si 0.766 3.234 4 H -0.208 1.208 5 H -0.205 1.205 6 H -0.207 1.207 7 C -0.542 4.542 8 H 0.056 0.944 9 C 0.121 3.879 10 N -0.315 5.315 11 C -0.051 4.051 12 C 0.383 3.617 13 F -0.169 7.169 14 F -0.159 7.159 15 F -0.171 7.171 16 C 0.350 3.650 17 O -0.423 6.423 18 C -0.084 4.084 19 N -0.116 5.116 20 C -0.083 4.083 21 C -0.133 4.133 22 C -0.106 4.106 23 C -0.082 4.082 24 Cl -0.006 7.006 25 H 0.071 0.929 26 H 0.031 0.969 27 H 0.097 0.903 28 H 0.154 0.846 29 H 0.150 0.850 30 H 0.188 0.812 31 H 0.209 0.791 32 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 2.598 -5.875 7.133 9.599 hybrid contribution 0.443 0.464 0.236 0.684 sum 3.042 -5.410 7.369 9.634 Atomic orbital electron populations 1.70014 1.06619 1.27164 1.51393 1.25249 0.95224 1.00649 0.95262 0.85888 0.78614 0.81051 0.77893 1.20811 1.20545 1.20654 1.21239 0.92011 0.91333 1.49612 0.94411 1.19970 0.87427 0.81464 0.98999 1.48112 1.44888 1.34068 1.04471 1.22643 0.97366 0.94669 0.90463 1.21402 0.82938 0.83339 0.74049 1.93187 1.44116 1.83848 1.95715 1.93163 1.92136 1.83930 1.46684 1.93170 1.96691 1.67656 1.59596 1.18225 0.81110 0.81708 0.83975 1.90762 1.33043 1.31560 1.86951 1.20922 0.98964 0.95768 0.92719 1.68706 1.07220 1.04672 1.30963 1.23536 0.97942 0.98960 0.87867 1.22833 0.94954 0.95050 1.00495 1.21904 0.96379 0.95158 0.97161 1.22232 0.97137 0.93544 0.95299 1.98384 1.62338 1.41148 1.98709 0.92877 0.96924 0.90310 0.84640 0.84961 0.81246 0.79083 0.79868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.37 13.29 21.45 0.28 -48.09 16 2 C 0.04 1.83 5.46 84.65 0.46 2.30 16 3 Si 0.94 41.19 29.54 68.60 2.03 43.21 16 4 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 6 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 7 C -0.50 -25.55 8.00 25.60 0.20 -25.35 16 8 H 0.04 1.99 7.81 -2.91 -0.02 1.97 16 9 C 0.24 11.50 4.47 85.64 0.38 11.88 16 10 N -0.59 -24.78 2.40 -829.30 -1.99 -26.77 16 11 C 0.07 2.62 5.49 86.38 0.47 3.10 16 12 C 0.44 15.23 3.29 71.98 0.24 15.46 16 13 F -0.19 -7.14 15.90 44.97 0.71 -6.42 16 14 F -0.18 -5.50 17.32 44.97 0.78 -4.72 16 15 F -0.19 -7.11 16.99 44.97 0.76 -6.35 16 16 C 0.56 23.85 7.31 86.85 0.64 24.49 16 17 O -0.54 -23.25 13.47 -3.78 -0.05 -23.30 16 18 C 0.05 2.14 6.63 41.90 0.28 2.41 16 19 N -0.40 -16.19 5.00 -184.84 -0.92 -17.11 16 20 C 0.08 2.36 11.18 84.84 0.95 3.31 16 21 C -0.11 -2.41 10.11 22.43 0.23 -2.18 16 22 C -0.08 -1.83 9.98 22.47 0.22 -1.60 16 23 C -0.05 -1.66 6.37 22.69 0.14 -1.51 16 24 Cl -0.03 -1.10 26.06 -2.72 -0.07 -1.17 16 25 H 0.26 13.28 8.31 -92.71 -0.77 12.51 16 26 H 0.01 0.65 6.98 -2.38 -0.02 0.64 16 27 H 0.08 3.99 5.21 -3.80 -0.02 3.97 16 28 H 0.14 4.36 8.11 -2.39 -0.02 4.34 16 29 H 0.13 4.30 7.24 -2.39 -0.02 4.28 16 30 H 0.17 4.90 8.06 -2.91 -0.02 4.88 16 31 H 0.19 2.15 8.06 -2.91 -0.02 2.12 16 32 H 0.18 2.68 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -62.56 307.40 6.94 -55.62 By element: Atomic # 1 Polarization: 1.61 SS G_CDS: 1.18 Total: 2.79 kcal Atomic # 6 Polarization: 28.08 SS G_CDS: 4.22 Total: 32.30 kcal Atomic # 7 Polarization: -89.34 SS G_CDS: -2.63 Total: -91.97 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: -0.05 Total: -23.30 kcal Atomic # 9 Polarization: -19.75 SS G_CDS: 2.26 Total: -17.49 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.21 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -0.07 Total: -1.17 kcal Total: -62.56 6.94 -55.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341333968.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.571 kcal (2) G-P(sol) polarization free energy of solvation -62.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds