Wall clock time and date at job start Tue Mar 31 2020 13:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38136 * 120.02379 * 2 1 4 4 C 1.38254 * 120.08221 * 179.97438 * 3 2 1 5 5 C 1.38398 * 120.13553 * 0.02562 * 4 3 2 6 6 Br 1.89101 * 119.96884 * 180.02562 * 5 4 3 7 7 C 1.38171 * 120.06103 * 359.72077 * 5 4 3 8 8 C 1.38891 * 120.02984 * 179.97438 * 2 1 3 9 9 N 1.39678 * 120.07274 * 0.02767 * 8 2 1 10 10 C 1.46500 * 120.00264 * 179.97438 * 9 8 2 11 11 C 1.52996 * 109.46949 * 179.97438 * 10 9 8 12 12 H 1.09000 * 109.47753 * 305.00252 * 11 10 9 13 13 C 1.47204 * 109.47042 * 65.00020 * 11 10 9 14 14 N 5.56141 * 73.14423 * 204.74966 * 2 1 3 15 15 C 1.52996 * 109.47153 * 184.99976 * 11 10 9 16 16 C 1.50702 * 109.47159 * 175.00123 * 15 11 10 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 11 18 18 C 1.37884 * 119.99942 * 179.72211 * 16 15 11 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 15 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 15 21 21 H 1.48504 * 109.47196 * 60.00645 * 20 18 16 22 22 H 1.48504 * 109.46887 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47679 * 300.00280 * 20 18 16 24 24 H 1.09006 * 109.46948 * 270.02084 * 1 2 3 25 25 H 1.08997 * 109.47260 * 30.01833 * 1 2 3 26 26 H 1.08994 * 109.46551 * 150.02476 * 1 2 3 27 27 H 1.07991 * 119.95875 * 359.97438 * 3 2 1 28 28 H 1.07996 * 119.92969 * 180.02562 * 4 3 2 29 29 H 1.07997 * 120.04395 * 180.27811 * 7 5 4 30 30 H 0.97002 * 119.99131 * 359.97438 * 9 8 2 31 31 H 1.08997 * 109.46786 * 59.99855 * 10 9 8 32 32 H 1.08996 * 109.47381 * 300.00053 * 10 9 8 33 33 H 1.09004 * 109.47066 * 55.00326 * 15 11 10 34 34 H 1.08994 * 109.47405 * 295.00156 * 15 11 10 35 35 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1960 0.0000 4 6 3.5807 1.1974 0.0005 5 6 4.2768 0.0012 0.0005 6 35 6.1678 0.0086 0.0020 7 6 3.5913 -1.1985 0.0058 8 6 2.2021 -1.2025 0.0005 9 7 1.5059 -2.4134 0.0005 10 6 2.2406 -3.6808 0.0005 11 6 1.2484 -4.8454 0.0011 12 1 0.5643 -4.7396 0.8431 13 6 0.4833 -4.8388 -1.2565 14 7 -0.1056 -4.8336 -2.2283 15 6 2.0115 -6.1655 0.1268 16 6 1.0307 -7.3029 0.2509 17 1 -0.0309 -7.1042 0.2406 18 6 1.4884 -8.5980 0.3712 19 7 2.7810 -8.8400 0.3833 20 14 0.2726 -10.0085 0.5173 21 1 -0.5916 -10.0442 -0.6900 22 1 1.0132 -11.2903 0.6344 23 1 -0.5706 -9.8125 1.7239 24 1 -0.3633 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5141 26 1 -0.3632 -0.8902 -0.5134 27 1 1.6580 2.1311 -0.0004 28 1 4.1186 2.1339 0.0010 29 1 4.1347 -2.1317 0.0104 30 1 0.5359 -2.4150 0.0005 31 1 2.8673 -3.7374 0.8905 32 1 2.8674 -3.7375 -0.8894 33 1 2.6466 -6.1352 1.0122 34 1 2.6295 -6.3137 -0.7587 35 1 3.1031 -9.7511 0.4683 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572870964.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:05 Heat of formation + Delta-G solvation = 21.586645 kcal Electronic energy + Delta-G solvation = -18109.875753 eV Core-core repulsion = 15152.625427 eV Total energy + Delta-G solvation = -2957.250326 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 322.038 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.72965 -38.69234 -36.50567 -35.46719 -34.27617 -33.31571 -31.31036 -30.45988 -28.33556 -27.01892 -25.37928 -23.77565 -22.55290 -21.96573 -18.78415 -18.45146 -17.97042 -17.19501 -16.61661 -16.23154 -15.64097 -15.16658 -15.10061 -14.81593 -14.52794 -14.32024 -14.05638 -13.96684 -13.76508 -13.40372 -13.27616 -13.16655 -12.94598 -12.54779 -12.47443 -12.22758 -12.12891 -11.91130 -11.73596 -11.50212 -11.24881 -11.19097 -10.83820 -10.55889 -9.54971 -8.34654 -8.20603 -6.29138 0.23356 0.61404 0.73405 1.41324 1.42879 1.49548 1.87622 1.90154 2.37409 2.47775 2.78013 3.11398 3.17598 3.88030 3.92330 4.05977 4.24461 4.26722 4.39356 4.59592 4.62864 4.72572 4.80529 4.83941 4.86497 4.90953 5.15849 5.27402 5.41420 5.44450 5.55785 5.57558 5.76339 5.82147 6.14580 6.29345 6.67421 6.76001 6.85498 7.39806 8.90025 Molecular weight = 322.04amu Principal moments of inertia in cm(-1) A = 0.016677 B = 0.003125 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.546827 B = 8958.683196 C =10324.126497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.155 4.155 3 C -0.067 4.067 4 C -0.155 4.155 5 C -0.058 4.058 6 Br -0.059 7.059 7 C -0.184 4.184 8 C 0.214 3.786 9 N -0.741 5.741 10 C 0.140 3.860 11 C 0.012 3.988 12 H 0.132 0.868 13 C 0.249 3.751 14 N -0.498 5.498 15 C 0.039 3.961 16 C -0.541 4.541 17 H 0.057 0.943 18 C 0.013 3.987 19 N -0.922 5.922 20 Si 0.947 3.053 21 H -0.281 1.281 22 H -0.284 1.284 23 H -0.262 1.262 24 H 0.080 0.920 25 H 0.084 0.916 26 H 0.054 0.946 27 H 0.156 0.844 28 H 0.142 0.858 29 H 0.128 0.872 30 H 0.405 0.595 31 H 0.095 0.905 32 H 0.059 0.941 33 H 0.041 0.959 34 H 0.004 0.996 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.031 23.181 3.160 23.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.160 4.160 3 C -0.086 4.086 4 C -0.177 4.177 5 C -0.138 4.138 6 Br 0.026 6.974 7 C -0.209 4.209 8 C 0.109 3.891 9 N -0.371 5.371 10 C 0.015 3.985 11 C -0.009 4.009 12 H 0.149 0.851 13 C -0.068 4.068 14 N -0.175 5.175 15 C 0.000 4.000 16 C -0.579 4.579 17 H 0.075 0.925 18 C -0.186 4.186 19 N -0.562 5.562 20 Si 0.773 3.227 21 H -0.207 1.207 22 H -0.209 1.209 23 H -0.187 1.187 24 H 0.099 0.901 25 H 0.102 0.898 26 H 0.072 0.928 27 H 0.174 0.826 28 H 0.160 0.840 29 H 0.146 0.854 30 H 0.242 0.758 31 H 0.113 0.887 32 H 0.078 0.922 33 H 0.059 0.941 34 H 0.022 0.978 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.092 22.856 1.708 23.127 hybrid contribution -0.769 -1.425 0.189 1.630 sum 2.323 21.431 1.897 21.640 Atomic orbital electron populations 1.20678 0.89646 1.03045 1.03021 1.19808 0.97219 0.91466 1.07507 1.21075 0.93087 0.97853 0.96631 1.21055 0.94681 0.96524 1.05404 1.21582 0.89793 0.96156 1.06246 1.96683 1.03670 1.99326 1.97690 1.20638 0.92693 0.97736 1.09843 1.17676 0.90728 0.86342 0.94335 1.44812 1.08503 1.02138 1.81691 1.21360 0.93629 0.80533 1.03020 1.19361 0.95918 0.97462 0.88201 0.85070 1.29509 0.92283 0.90445 0.94514 1.81068 1.12002 1.11403 1.13054 1.18968 0.94811 0.88538 0.97705 1.21503 0.93474 0.92521 1.50440 0.92483 1.25690 0.96557 1.01407 0.94946 1.70022 1.14023 1.21285 1.50825 0.85770 0.79267 0.78823 0.78846 1.20692 1.20915 1.18691 0.90134 0.89756 0.92759 0.82614 0.84030 0.85377 0.75795 0.88680 0.92237 0.94112 0.97802 0.92689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.64 9.57 71.24 0.68 -0.96 16 2 C -0.16 -3.06 5.90 -19.73 -0.12 -3.17 16 3 C -0.07 -1.15 9.69 22.25 0.22 -0.94 16 4 C -0.15 -2.96 9.78 22.31 0.22 -2.74 16 5 C -0.06 -1.31 6.22 22.29 0.14 -1.17 16 6 Br -0.06 -1.27 33.70 -20.37 -0.69 -1.96 16 7 C -0.18 -4.53 9.05 22.42 0.20 -4.33 16 8 C 0.21 5.04 6.63 38.21 0.25 5.29 16 9 N -0.74 -17.48 5.42 -339.44 -1.84 -19.32 16 10 C 0.14 3.72 4.28 86.38 0.37 4.08 16 11 C 0.01 0.40 2.26 -12.60 -0.03 0.37 16 12 H 0.13 3.71 8.14 -2.39 -0.02 3.69 16 13 C 0.25 9.32 13.45 89.44 1.20 10.52 16 14 N -0.50 -20.68 18.54 20.01 0.37 -20.31 16 15 C 0.04 1.68 4.42 29.85 0.13 1.81 16 16 C -0.54 -27.47 8.60 25.60 0.22 -27.25 16 17 H 0.06 2.83 7.59 -2.91 -0.02 2.81 16 18 C 0.01 0.71 5.46 84.66 0.46 1.17 16 19 N -0.92 -51.83 13.29 21.45 0.28 -51.55 16 20 Si 0.95 42.32 29.54 68.60 2.03 44.34 16 21 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 22 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 23 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 24 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 25 H 0.08 1.01 8.09 -2.39 -0.02 0.99 16 26 H 0.05 0.92 6.55 -2.39 -0.02 0.90 16 27 H 0.16 1.71 8.06 -2.92 -0.02 1.69 16 28 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 29 H 0.13 3.21 6.73 -2.91 -0.02 3.19 16 30 H 0.40 8.84 6.21 -92.71 -0.58 8.26 16 31 H 0.10 2.32 7.94 -2.39 -0.02 2.30 16 32 H 0.06 1.68 7.96 -2.39 -0.02 1.67 16 33 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 34 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 35 H 0.26 14.21 8.31 -92.70 -0.77 13.44 16 Total: -1.00 -60.83 325.18 4.64 -56.19 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: 0.54 Total: 9.91 kcal Atomic # 6 Polarization: -21.25 SS G_CDS: 3.95 Total: -17.30 kcal Atomic # 7 Polarization: -89.99 SS G_CDS: -1.18 Total: -91.18 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.34 kcal Atomic # 35 Polarization: -1.27 SS G_CDS: -0.69 Total: -1.96 kcal Total: -60.83 4.64 -56.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572870964.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.772 kcal (2) G-P(sol) polarization free energy of solvation -60.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds