Wall clock time and date at job start Tue Mar 31 2020 12:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00210 * 2 1 4 4 H 1.48497 * 109.47427 * 270.00472 * 3 2 1 5 5 H 1.48500 * 109.47198 * 30.00479 * 3 2 1 6 6 H 1.48500 * 109.47519 * 150.00417 * 3 2 1 7 7 C 1.37875 * 119.99772 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99737 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00120 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.47300 * 180.02562 * 9 7 2 11 11 S 1.81397 * 109.47166 * 180.02562 * 10 9 7 12 12 C 1.81401 * 102.99785 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.47002 * 179.97438 * 12 11 10 14 14 C 1.38173 * 120.01824 * 269.72506 * 13 12 11 15 15 C 1.38342 * 120.03571 * 179.72320 * 14 13 12 16 16 Cl 1.73606 * 119.95588 * 180.27747 * 15 14 13 17 17 C 1.38389 * 120.08934 * 0.54883 * 15 14 13 18 18 C 1.38121 * 120.04054 * 359.73055 * 17 15 14 19 19 C 1.38702 * 120.02110 * 89.99743 * 13 12 11 20 20 O 1.35913 * 120.04141 * 0.02733 * 19 13 12 21 21 C 1.42907 * 116.99750 * 180.02562 * 20 19 13 22 22 F 1.39898 * 109.46648 * 299.99399 * 21 20 19 23 23 F 1.39891 * 109.47221 * 59.99568 * 21 20 19 24 24 H 0.97003 * 119.99657 * 359.97438 * 1 2 3 25 25 H 1.08991 * 109.47447 * 59.99990 * 9 7 2 26 26 H 1.09000 * 109.47161 * 299.99662 * 9 7 2 27 27 H 1.09004 * 109.46969 * 59.99763 * 10 9 7 28 28 H 1.09000 * 109.46704 * 300.00268 * 10 9 7 29 29 H 1.09002 * 109.47085 * 299.99903 * 12 11 10 30 30 H 1.09001 * 109.47417 * 60.00029 * 12 11 10 31 31 H 1.07988 * 119.97974 * 359.97438 * 14 13 12 32 32 H 1.08002 * 119.98066 * 179.69932 * 17 15 14 33 33 H 1.08001 * 120.02126 * 179.97438 * 18 17 15 34 34 H 1.09004 * 109.47065 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 16 1.3381 -5.2330 -0.0013 12 6 2.6648 -6.4702 -0.0020 13 6 2.0632 -7.8519 -0.0020 14 6 1.7929 -8.4882 1.1943 15 6 1.2353 -9.7543 1.1947 16 17 0.8899 -10.5489 2.6991 17 6 0.9576 -10.3905 -0.0025 18 6 1.2318 -9.7600 -1.2004 19 6 1.7856 -8.4879 -1.2030 20 8 2.0565 -7.8660 -2.3808 21 6 1.7442 -8.5804 -3.5784 22 9 2.4684 -9.7769 -3.6099 23 9 0.3745 -8.8633 -3.6089 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8902 26 1 0.6247 -2.5571 0.8897 27 1 2.8719 -3.6044 0.8895 28 1 2.8718 -3.6043 -0.8905 29 1 3.2809 -6.3417 -0.8920 30 1 3.2811 -6.3427 0.8880 31 1 2.0133 -7.9952 2.1295 32 1 0.5268 -11.3809 -0.0001 33 1 1.0153 -10.2570 -2.1345 34 1 2.0095 -7.9727 -4.4436 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000616293000.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:59 Heat of formation + Delta-G solvation = -143.397995 kcal Electronic energy + Delta-G solvation = -21650.488754 eV Core-core repulsion = 17756.742433 eV Total energy + Delta-G solvation = -3893.746321 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 322.035 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.66187 -47.64045 -40.45727 -37.97873 -36.48375 -33.68860 -33.11734 -30.86594 -30.45472 -27.49388 -26.34549 -25.21814 -22.94242 -22.20343 -20.99638 -19.25315 -18.45567 -18.21806 -16.74743 -16.54016 -16.49974 -15.66451 -15.53289 -14.92807 -14.51962 -14.42528 -14.26729 -13.98709 -13.93925 -13.75299 -13.47735 -13.27772 -13.14418 -13.07139 -12.66390 -12.21660 -11.93448 -11.61184 -11.53085 -11.21523 -11.04787 -11.03079 -10.61615 -10.19961 -9.76388 -9.65869 -9.10532 -9.05081 -8.48544 -8.42696 -7.13891 -6.06461 -4.11177 0.75037 0.86229 1.89347 2.24103 2.26022 3.14555 3.18941 3.28504 3.35130 3.36215 3.38151 3.98912 4.29460 4.33469 4.40789 4.41319 4.71556 4.80294 5.07921 5.12508 5.29068 5.45078 5.60270 5.75619 5.78239 5.93020 5.99026 6.17356 6.18512 6.63738 6.72387 7.56257 7.64938 7.89813 8.26876 8.93860 9.52737 11.04292 Molecular weight = 322.03amu Principal moments of inertia in cm(-1) A = 0.013989 B = 0.002985 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.055898 B = 9377.879741 C =10849.331860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.057 0.943 9 C 0.038 3.962 10 C -0.061 4.061 11 S -0.270 6.270 12 C -0.049 4.049 13 C -0.064 4.064 14 C -0.061 4.061 15 C -0.058 4.058 16 Cl -0.068 7.068 17 C -0.073 4.073 18 C -0.179 4.179 19 C 0.127 3.873 20 O -0.305 6.305 21 C 0.410 3.590 22 F -0.201 7.201 23 F -0.196 7.196 24 H 0.263 0.737 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.147 0.853 32 H 0.139 0.861 33 H 0.143 0.857 34 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.643 -23.350 -3.767 24.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.001 4.001 10 C -0.209 4.209 11 S -0.040 6.040 12 C -0.197 4.197 13 C -0.066 4.066 14 C -0.082 4.082 15 C -0.084 4.084 16 Cl -0.039 7.039 17 C -0.093 4.093 18 C -0.198 4.198 19 C 0.081 3.919 20 O -0.222 6.222 21 C 0.320 3.680 22 F -0.183 7.183 23 F -0.178 7.178 24 H 0.072 0.928 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.111 0.889 30 H 0.108 0.892 31 H 0.164 0.836 32 H 0.157 0.843 33 H 0.160 0.840 34 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 3.439 -23.292 -3.666 23.828 hybrid contribution 1.512 0.749 -0.007 1.688 sum 4.951 -22.542 -3.673 23.370 Atomic orbital electron populations 1.69974 1.06075 1.26866 1.49966 1.25013 0.94892 0.99295 0.95056 0.86523 0.79768 0.83132 0.78162 1.20567 1.21100 1.19812 1.21094 0.92991 0.90254 1.51791 0.92455 1.18898 0.93409 0.89219 0.98559 1.23718 1.01481 0.92511 1.03160 1.87197 1.16193 1.02535 1.98037 1.22087 0.99526 0.92271 1.05782 1.18591 1.02856 0.95357 0.89756 1.20818 0.96658 0.92604 0.98090 1.20768 1.05414 0.94873 0.87391 1.98371 1.93846 1.79791 1.31865 1.20808 0.98464 1.00186 0.89840 1.21433 1.03996 0.94505 0.99886 1.18658 0.96708 0.91586 0.84921 1.86730 1.79459 1.43701 1.12317 1.23465 0.73581 0.80487 0.90466 1.93091 1.77844 1.50716 1.96623 1.93109 1.33910 1.94160 1.96581 0.92772 0.95535 0.95532 0.91339 0.91344 0.88897 0.89169 0.83564 0.84318 0.83979 0.79900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.52 -14.51 9.11 -34.44 -0.31 -14.82 16 8 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 9 C 0.04 0.98 4.98 -27.88 -0.14 0.84 16 10 C -0.06 -1.26 5.88 37.16 0.22 -1.04 16 11 S -0.27 -4.97 21.72 -107.50 -2.33 -7.30 16 12 C -0.05 -0.69 5.85 36.01 0.21 -0.47 16 13 C -0.06 -0.83 5.15 -104.47 -0.54 -1.36 16 14 C -0.06 -0.73 9.48 -39.57 -0.38 -1.10 16 15 C -0.06 -0.64 6.32 -39.49 -0.25 -0.89 16 16 Cl -0.07 -0.69 28.95 -51.86 -1.50 -2.19 16 17 C -0.07 -0.75 9.82 -39.57 -0.39 -1.14 16 18 C -0.18 -1.98 8.26 -39.44 -0.33 -2.30 16 19 C 0.13 1.58 6.45 -39.22 -0.25 1.33 16 20 O -0.31 -3.56 9.48 -19.47 -0.18 -3.74 16 21 C 0.41 3.38 5.98 101.05 0.60 3.99 16 22 F -0.20 -1.76 15.58 2.25 0.04 -1.72 16 23 F -0.20 -1.96 15.58 2.25 0.04 -1.92 16 24 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.07 1.35 8.14 -51.92 -0.42 0.93 16 28 H 0.07 1.35 8.14 -51.92 -0.42 0.93 16 29 H 0.09 1.24 7.53 -51.92 -0.39 0.85 16 30 H 0.09 1.12 8.08 -51.92 -0.42 0.70 16 31 H 0.15 1.57 8.06 -52.49 -0.42 1.15 16 32 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 33 H 0.14 1.40 5.10 -52.49 -0.27 1.13 16 34 H 0.18 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 331.78 15.07 5.00 5.00 Total: -1.00 -31.33 331.78 -8.46 -39.79 By element: Atomic # 1 Polarization: 0.64 SS G_CDS: -3.58 Total: -2.94 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: -1.65 Total: -15.39 kcal Atomic # 7 Polarization: -26.59 SS G_CDS: 0.74 Total: -25.85 kcal Atomic # 8 Polarization: -3.56 SS G_CDS: -0.18 Total: -3.74 kcal Atomic # 9 Polarization: -3.72 SS G_CDS: 0.07 Total: -3.65 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -4.97 SS G_CDS: -2.33 Total: -7.30 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.50 Total: -2.19 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.33 -8.46 -39.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616293000.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.608 kcal (2) G-P(sol) polarization free energy of solvation -31.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds