Wall clock time and date at job start Tue Mar 31 2020 12:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00210 * 2 1 4 4 H 1.48497 * 109.47427 * 270.00472 * 3 2 1 5 5 H 1.48500 * 109.47198 * 30.00479 * 3 2 1 6 6 H 1.48500 * 109.47519 * 150.00417 * 3 2 1 7 7 C 1.37875 * 119.99772 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99737 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00120 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.47300 * 180.02562 * 9 7 2 11 11 S 1.81397 * 109.47166 * 180.02562 * 10 9 7 12 12 C 1.81401 * 102.99785 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.47002 * 179.97438 * 12 11 10 14 14 C 1.38173 * 120.01824 * 269.72506 * 13 12 11 15 15 C 1.38342 * 120.03571 * 179.72320 * 14 13 12 16 16 Cl 1.73606 * 119.95588 * 180.27747 * 15 14 13 17 17 C 1.38389 * 120.08934 * 0.54883 * 15 14 13 18 18 C 1.38121 * 120.04054 * 359.73055 * 17 15 14 19 19 C 1.38702 * 120.02110 * 89.99743 * 13 12 11 20 20 O 1.35913 * 120.04141 * 0.02733 * 19 13 12 21 21 C 1.42907 * 116.99750 * 180.02562 * 20 19 13 22 22 F 1.39898 * 109.46648 * 299.99399 * 21 20 19 23 23 F 1.39891 * 109.47221 * 59.99568 * 21 20 19 24 24 H 0.97003 * 119.99657 * 359.97438 * 1 2 3 25 25 H 1.08991 * 109.47447 * 59.99990 * 9 7 2 26 26 H 1.09000 * 109.47161 * 299.99662 * 9 7 2 27 27 H 1.09004 * 109.46969 * 59.99763 * 10 9 7 28 28 H 1.09000 * 109.46704 * 300.00268 * 10 9 7 29 29 H 1.09002 * 109.47085 * 299.99903 * 12 11 10 30 30 H 1.09001 * 109.47417 * 60.00029 * 12 11 10 31 31 H 1.07988 * 119.97974 * 359.97438 * 14 13 12 32 32 H 1.08002 * 119.98066 * 179.69932 * 17 15 14 33 33 H 1.08001 * 120.02126 * 179.97438 * 18 17 15 34 34 H 1.09004 * 109.47065 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 16 1.3381 -5.2330 -0.0013 12 6 2.6648 -6.4702 -0.0020 13 6 2.0632 -7.8519 -0.0020 14 6 1.7929 -8.4882 1.1943 15 6 1.2353 -9.7543 1.1947 16 17 0.8899 -10.5489 2.6991 17 6 0.9576 -10.3905 -0.0025 18 6 1.2318 -9.7600 -1.2004 19 6 1.7856 -8.4879 -1.2030 20 8 2.0565 -7.8660 -2.3808 21 6 1.7442 -8.5804 -3.5784 22 9 2.4684 -9.7769 -3.6099 23 9 0.3745 -8.8633 -3.6089 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8902 26 1 0.6247 -2.5571 0.8897 27 1 2.8719 -3.6044 0.8895 28 1 2.8718 -3.6043 -0.8905 29 1 3.2809 -6.3417 -0.8920 30 1 3.2811 -6.3427 0.8880 31 1 2.0133 -7.9952 2.1295 32 1 0.5268 -11.3809 -0.0001 33 1 1.0153 -10.2570 -2.1345 34 1 2.0095 -7.9727 -4.4436 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000616293000.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:58 Heat of formation + Delta-G solvation = -159.699151 kcal Electronic energy + Delta-G solvation = -21651.195625 eV Core-core repulsion = 17756.742433 eV Total energy + Delta-G solvation = -3894.453192 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 322.035 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.34568 -48.33105 -41.31700 -38.81154 -37.31756 -35.76166 -34.05954 -32.88837 -31.31214 -28.50350 -27.26214 -27.03111 -23.82601 -23.40185 -22.63110 -20.04647 -19.17999 -18.91998 -18.65768 -17.65008 -17.36323 -16.93187 -16.50682 -16.37432 -15.91251 -15.58202 -15.27814 -15.11430 -14.82502 -14.66299 -14.64341 -14.31115 -14.07997 -14.04608 -13.84347 -13.60601 -13.48403 -12.92593 -12.84361 -12.51107 -12.39994 -12.14163 -12.09243 -11.90277 -11.65340 -11.37164 -10.84010 -10.59661 -10.07360 -9.39308 -8.61187 -8.21938 -6.35589 -0.21156 -0.01657 0.94600 1.06999 1.42270 1.43685 1.54637 1.54956 1.76034 2.41300 2.44515 2.50304 3.11395 3.33153 3.47902 3.57977 3.67804 3.85742 3.96815 4.11999 4.22495 4.29288 4.40683 4.54142 4.65488 4.82651 4.89798 4.94024 5.04964 5.31067 5.39748 5.51312 5.75109 5.78958 6.12201 6.79006 7.34009 8.89809 Molecular weight = 322.03amu Principal moments of inertia in cm(-1) A = 0.013989 B = 0.002985 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.055898 B = 9377.879741 C =10849.331860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.972 3.028 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.541 4.541 8 H 0.068 0.932 9 C 0.044 3.956 10 C -0.049 4.049 11 S -0.305 6.305 12 C -0.028 4.028 13 C -0.086 4.086 14 C -0.063 4.063 15 C -0.066 4.066 16 Cl -0.060 7.060 17 C -0.065 4.065 18 C -0.184 4.184 19 C 0.119 3.881 20 O -0.321 6.321 21 C 0.406 3.594 22 F -0.204 7.204 23 F -0.207 7.207 24 H 0.265 0.735 25 H -0.005 1.005 26 H -0.005 1.005 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.100 0.900 30 H 0.107 0.893 31 H 0.153 0.847 32 H 0.163 0.837 33 H 0.153 0.847 34 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.116 -24.192 -4.092 25.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.796 3.204 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.581 4.581 8 H 0.086 0.914 9 C 0.006 3.994 10 C -0.197 4.197 11 S -0.075 6.075 12 C -0.175 4.175 13 C -0.088 4.088 14 C -0.083 4.083 15 C -0.093 4.093 16 Cl -0.031 7.031 17 C -0.085 4.085 18 C -0.203 4.203 19 C 0.073 3.927 20 O -0.238 6.238 21 C 0.317 3.683 22 F -0.185 7.185 23 F -0.189 7.189 24 H 0.074 0.926 25 H 0.014 0.986 26 H 0.014 0.986 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.118 0.882 30 H 0.125 0.875 31 H 0.171 0.829 32 H 0.181 0.819 33 H 0.170 0.830 34 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 4.924 -24.138 -3.995 24.957 hybrid contribution 1.014 0.825 0.081 1.310 sum 5.938 -23.313 -3.914 24.374 Atomic orbital electron populations 1.70121 1.08006 1.28022 1.51036 1.26027 0.95767 1.03550 0.94394 0.85348 0.78624 0.77890 0.78582 1.19626 1.20858 1.18384 1.21555 0.93734 0.91323 1.51462 0.91356 1.18670 0.93714 0.91498 0.95504 1.23337 1.00125 0.92209 1.04016 1.87257 1.19066 1.02985 1.98170 1.22060 0.97584 0.90894 1.06976 1.18580 1.04634 0.95038 0.90558 1.20956 0.96289 0.92987 0.98101 1.20857 1.05524 0.94833 0.88057 1.98374 1.93778 1.79541 1.31414 1.21124 0.97144 1.00963 0.89247 1.21604 1.03876 0.94168 1.00656 1.18868 0.96493 0.92084 0.85246 1.86715 1.79529 1.44718 1.12874 1.24220 0.72884 0.80801 0.90433 1.93081 1.77813 1.51103 1.96546 1.93083 1.35004 1.94278 1.96548 0.92607 0.98638 0.98649 0.90352 0.90440 0.88190 0.87474 0.82895 0.81929 0.82984 0.75488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.96 13.29 21.45 0.28 -56.68 16 2 C 0.00 0.06 5.46 84.65 0.46 0.52 16 3 Si 0.97 43.55 29.54 68.60 2.03 45.57 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 6 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 7 C -0.54 -30.44 9.11 25.60 0.23 -30.20 16 8 H 0.07 3.60 7.74 -2.91 -0.02 3.57 16 9 C 0.04 2.39 4.98 29.85 0.15 2.54 16 10 C -0.05 -2.03 5.88 71.98 0.42 -1.61 16 11 S -0.30 -11.27 21.72 -56.49 -1.23 -12.50 16 12 C -0.03 -0.75 5.85 71.24 0.42 -0.33 16 13 C -0.09 -2.13 5.15 -19.77 -0.10 -2.24 16 14 C -0.06 -1.41 9.48 22.28 0.21 -1.20 16 15 C -0.07 -1.36 6.32 22.33 0.14 -1.21 16 16 Cl -0.06 -1.13 28.95 -2.72 -0.08 -1.21 16 17 C -0.07 -1.22 9.82 22.28 0.22 -1.00 16 18 C -0.18 -3.77 8.26 22.36 0.18 -3.58 16 19 C 0.12 2.83 6.45 22.50 0.15 2.97 16 20 O -0.32 -7.06 9.48 -92.57 -0.88 -7.94 16 21 C 0.41 5.97 5.98 113.37 0.68 6.64 16 22 F -0.20 -3.20 15.58 44.97 0.70 -2.50 16 23 F -0.21 -3.87 15.58 44.97 0.70 -3.17 16 24 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 25 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 26 H 0.00 -0.29 8.14 -2.39 -0.02 -0.31 16 27 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 28 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 29 H 0.10 2.52 7.53 -2.39 -0.02 2.50 16 30 H 0.11 2.47 8.08 -2.39 -0.02 2.45 16 31 H 0.15 3.12 8.06 -2.92 -0.02 3.09 16 32 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 33 H 0.15 2.74 5.10 -2.91 -0.01 2.73 16 34 H 0.23 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -68.56 331.78 5.82 -62.73 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: 1.13 Total: 4.39 kcal Atomic # 6 Polarization: -31.87 SS G_CDS: 3.16 Total: -28.71 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: 0.28 Total: -56.68 kcal Atomic # 8 Polarization: -7.06 SS G_CDS: -0.88 Total: -7.94 kcal Atomic # 9 Polarization: -7.08 SS G_CDS: 1.40 Total: -5.67 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Atomic # 16 Polarization: -11.27 SS G_CDS: -1.23 Total: -12.50 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -0.08 Total: -1.21 kcal Total: -68.56 5.82 -62.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616293000.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.965 kcal (2) G-P(sol) polarization free energy of solvation -68.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds