Wall clock time and date at job start Tue Mar 31 2020 12:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50699 * 109.47078 * 239.99821 * 2 1 3 5 5 H 1.08003 * 119.99962 * 240.00350 * 4 2 1 6 6 C 1.37874 * 120.00270 * 59.99958 * 4 2 1 7 7 N 1.31516 * 119.99500 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00390 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46755 * 90.00226 * 8 6 4 10 10 H 1.48498 * 109.46866 * 210.00212 * 8 6 4 11 11 H 1.48496 * 109.47178 * 330.00276 * 8 6 4 12 12 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 13 13 C 1.46505 * 119.99873 * 59.99624 * 12 2 1 14 14 S 1.65601 * 120.00051 * 239.99945 * 12 2 1 15 15 O 1.42100 * 106.40006 * 203.53712 * 14 12 2 16 16 O 1.42098 * 106.40043 * 336.45994 * 14 12 2 17 17 C 1.76199 * 107.21580 * 89.99958 * 14 12 2 18 18 C 1.38583 * 120.41719 * 114.72332 * 17 14 12 19 19 C 1.38643 * 118.46780 * 179.77942 * 18 17 14 20 20 C 1.38313 * 119.20952 * 0.51221 * 19 18 17 21 21 Cl 1.73606 * 119.61659 * 179.70152 * 20 19 18 22 22 N 1.31994 * 120.76549 * 359.72917 * 20 19 18 23 23 C 1.32081 * 121.66882 * 359.97438 * 22 20 19 24 24 F 1.35103 * 119.64093 * 180.02562 * 23 22 20 25 25 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 26 26 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 27 27 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 28 28 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 29 29 H 1.08999 * 109.46723 * 90.00515 * 13 12 2 30 30 H 1.08997 * 109.46979 * 210.00219 * 13 12 2 31 31 H 1.09005 * 109.46961 * 330.00570 * 13 12 2 32 32 H 1.08001 * 120.76286 * 359.97438 * 18 17 14 33 33 H 1.08001 * 120.39225 * 180.23998 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.3447 -2.1617 -4.4123 10 1 2.4872 -0.1403 -5.1120 11 1 3.6308 -1.7567 -3.7120 12 7 2.0184 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4281 14 16 2.9705 0.1142 2.2862 15 8 3.7118 -0.8789 2.9815 16 8 3.5794 1.1829 1.5748 17 6 1.8961 0.8535 3.4711 18 6 1.9211 0.4417 4.7941 19 6 1.0616 1.0542 5.6932 20 6 0.2051 2.0422 5.2422 21 17 -0.8810 2.8107 6.3574 22 7 0.2036 2.4071 3.9737 23 6 1.0125 1.8496 3.0908 24 9 0.9768 2.2551 1.8026 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 0.7089 1.1613 -3.4844 29 1 2.4157 -2.7377 0.9718 30 1 1.6238 -2.2852 2.5002 31 1 0.6903 -2.3002 0.9846 32 1 2.5968 -0.3361 5.1179 33 1 1.0579 0.7602 6.7324 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692872864.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:07 Heat of formation + Delta-G solvation = -69.158575 kcal Electronic energy + Delta-G solvation = -23797.900686 eV Core-core repulsion = 19927.293590 eV Total energy + Delta-G solvation = -3870.607096 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 322.034 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.29179 -40.40924 -37.14839 -36.89748 -36.29918 -35.47860 -33.27837 -32.64438 -31.22059 -29.17125 -25.74753 -25.21983 -24.56560 -24.12147 -20.86336 -19.05375 -18.46432 -18.00339 -17.43026 -17.01146 -16.36430 -16.25760 -15.82321 -15.28030 -14.59059 -14.29129 -14.16461 -13.96071 -13.64084 -13.55124 -13.17139 -12.86787 -12.13076 -12.05970 -11.90088 -11.82189 -11.69429 -11.42434 -11.37543 -11.30860 -11.01849 -10.82590 -10.64132 -10.48271 -10.32599 -10.17826 -10.03664 -9.48216 -9.29952 -8.47554 -8.10806 -6.08331 -4.15922 -0.01454 0.59449 0.68261 1.18044 2.83723 3.22974 3.28323 3.35565 3.37974 3.43146 3.90134 4.08781 4.29154 4.38629 4.44147 4.90946 5.12794 5.22155 5.27059 5.29641 5.46043 5.92169 6.03805 6.24392 6.52258 6.70705 6.74189 6.89531 6.96666 7.31898 7.58579 7.75073 8.00482 8.22636 8.85867 9.49840 10.97322 Molecular weight = 322.03amu Principal moments of inertia in cm(-1) A = 0.021899 B = 0.004486 C = 0.004055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.311395 B = 6239.586872 C = 6903.506784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.263 3.737 3 H 0.068 0.932 4 C -0.521 4.521 5 H 0.065 0.935 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.973 5.973 13 C 0.105 3.895 14 S 2.683 3.317 15 O -0.962 6.962 16 O -0.933 6.933 17 C -0.759 4.759 18 C 0.060 3.940 19 C -0.192 4.192 20 C 0.252 3.748 21 Cl -0.010 7.010 22 N -0.522 5.522 23 C 0.433 3.567 24 F -0.068 7.068 25 H 0.097 0.903 26 H 0.007 0.993 27 H 0.034 0.966 28 H 0.264 0.736 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.076 0.924 32 H 0.175 0.825 33 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.223 -1.134 17.113 17.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.160 3.840 3 H 0.085 0.915 4 C -0.561 4.561 5 H 0.083 0.917 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.815 5.815 13 C -0.041 4.041 14 S 2.766 3.234 15 O -0.952 6.952 16 O -0.923 6.923 17 C -0.842 4.842 18 C 0.033 3.967 19 C -0.214 4.214 20 C 0.087 3.913 21 Cl 0.019 6.981 22 N -0.240 5.240 23 C 0.278 3.722 24 F -0.047 7.047 25 H 0.115 0.885 26 H 0.026 0.974 27 H 0.053 0.947 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.094 0.906 32 H 0.192 0.808 33 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -2.111 -0.183 16.781 16.914 hybrid contribution -0.232 -0.536 -0.429 0.724 sum -2.342 -0.719 16.352 16.535 Atomic orbital electron populations 1.22157 0.98146 0.99713 1.00839 1.18961 0.91455 0.93514 0.80027 0.91462 1.21271 1.31985 1.13125 0.89715 0.91726 1.24909 0.94935 0.94970 0.98992 1.69865 1.36281 1.22488 1.23910 0.86474 0.79283 0.79258 0.82269 1.20659 1.21097 1.19771 1.57487 1.70353 1.19615 1.34023 1.21267 1.02295 0.81400 0.99106 1.02641 0.74151 0.73889 0.72672 1.93520 1.67838 1.58706 1.75152 1.93634 1.72547 1.55848 1.70285 1.32593 1.21628 1.13869 1.16103 1.21372 0.92504 0.93686 0.89099 1.21952 0.98186 0.98439 1.02795 1.21556 0.90691 0.90932 0.88119 1.98444 1.62266 1.80638 1.56776 1.66312 1.24857 1.30400 1.02397 1.17117 0.87825 0.87185 0.80050 1.91895 1.94007 1.88512 1.30253 0.88502 0.97371 0.94657 0.92580 0.92451 0.93041 0.90556 0.80761 0.81936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.36 8.76 37.16 0.33 -3.04 16 2 C 0.26 6.28 1.94 -69.08 -0.13 6.15 16 3 H 0.07 1.78 5.90 -51.93 -0.31 1.48 16 4 C -0.52 -13.67 8.37 -34.44 -0.29 -13.96 16 5 H 0.06 1.66 7.65 -52.48 -0.40 1.26 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -24.45 11.32 55.43 0.63 -23.82 16 8 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 9 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 12 N -0.97 -19.43 3.06 -115.85 -0.35 -19.79 16 13 C 0.11 1.73 9.53 59.85 0.57 2.30 16 14 S 2.68 50.30 5.30 -107.50 -0.57 49.73 16 15 O -0.96 -17.49 16.12 -57.17 -0.92 -18.42 16 16 O -0.93 -20.96 16.01 -57.17 -0.92 -21.87 16 17 C -0.76 -11.91 5.93 -39.36 -0.23 -12.14 16 18 C 0.06 0.69 9.66 -39.30 -0.38 0.31 16 19 C -0.19 -1.92 9.87 -39.40 -0.39 -2.31 16 20 C 0.25 3.16 7.27 -17.45 -0.13 3.03 16 21 Cl -0.01 -0.10 29.11 -51.86 -1.51 -1.61 16 22 N -0.52 -8.37 10.35 -10.70 -0.11 -8.48 16 23 C 0.43 7.53 8.33 -17.35 -0.14 7.38 16 24 F -0.07 -1.37 13.24 2.25 0.03 -1.34 16 25 H 0.10 2.44 6.07 -51.93 -0.32 2.12 16 26 H 0.01 0.15 7.02 -51.93 -0.36 -0.21 16 27 H 0.03 0.74 6.66 -51.93 -0.35 0.39 16 28 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.05 0.67 7.79 -51.93 -0.40 0.27 16 31 H 0.08 1.22 6.43 -51.93 -0.33 0.89 16 32 H 0.18 1.53 7.43 -52.49 -0.39 1.14 16 33 H 0.16 0.96 8.06 -52.49 -0.42 0.53 16 LS Contribution 309.81 15.07 4.67 4.67 Total: -1.00 -31.03 309.81 -7.81 -38.84 By element: Atomic # 1 Polarization: -0.17 SS G_CDS: -2.84 Total: -3.01 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: -0.89 Total: -10.64 kcal Atomic # 7 Polarization: -52.25 SS G_CDS: 0.16 Total: -52.09 kcal Atomic # 8 Polarization: -38.45 SS G_CDS: -1.84 Total: -40.29 kcal Atomic # 9 Polarization: -1.37 SS G_CDS: 0.03 Total: -1.34 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: 50.30 SS G_CDS: -0.57 Total: 49.73 kcal Atomic # 17 Polarization: -0.10 SS G_CDS: -1.51 Total: -1.61 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.03 -7.81 -38.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692872864.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.316 kcal (2) G-P(sol) polarization free energy of solvation -31.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds