Wall clock time and date at job start Tue Mar 31 2020 12:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50699 * 109.47078 * 239.99821 * 2 1 3 5 5 H 1.08003 * 119.99962 * 240.00350 * 4 2 1 6 6 C 1.37874 * 120.00270 * 59.99958 * 4 2 1 7 7 N 1.31516 * 119.99500 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00390 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46755 * 90.00226 * 8 6 4 10 10 H 1.48498 * 109.46866 * 210.00212 * 8 6 4 11 11 H 1.48496 * 109.47178 * 330.00276 * 8 6 4 12 12 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 13 13 C 1.46505 * 119.99873 * 59.99624 * 12 2 1 14 14 S 1.65601 * 120.00051 * 239.99945 * 12 2 1 15 15 O 1.42100 * 106.40006 * 203.53712 * 14 12 2 16 16 O 1.42098 * 106.40043 * 336.45994 * 14 12 2 17 17 C 1.76199 * 107.21580 * 89.99958 * 14 12 2 18 18 C 1.38583 * 120.41719 * 114.72332 * 17 14 12 19 19 C 1.38643 * 118.46780 * 179.77942 * 18 17 14 20 20 C 1.38313 * 119.20952 * 0.51221 * 19 18 17 21 21 Cl 1.73606 * 119.61659 * 179.70152 * 20 19 18 22 22 N 1.31994 * 120.76549 * 359.72917 * 20 19 18 23 23 C 1.32081 * 121.66882 * 359.97438 * 22 20 19 24 24 F 1.35103 * 119.64093 * 180.02562 * 23 22 20 25 25 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 26 26 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 27 27 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 28 28 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 29 29 H 1.08999 * 109.46723 * 90.00515 * 13 12 2 30 30 H 1.08997 * 109.46979 * 210.00219 * 13 12 2 31 31 H 1.09005 * 109.46961 * 330.00570 * 13 12 2 32 32 H 1.08001 * 120.76286 * 359.97438 * 18 17 14 33 33 H 1.08001 * 120.39225 * 180.23998 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.3447 -2.1617 -4.4123 10 1 2.4872 -0.1403 -5.1120 11 1 3.6308 -1.7567 -3.7120 12 7 2.0184 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4281 14 16 2.9705 0.1142 2.2862 15 8 3.7118 -0.8789 2.9815 16 8 3.5794 1.1829 1.5748 17 6 1.8961 0.8535 3.4711 18 6 1.9211 0.4417 4.7941 19 6 1.0616 1.0542 5.6932 20 6 0.2051 2.0422 5.2422 21 17 -0.8810 2.8107 6.3574 22 7 0.2036 2.4071 3.9737 23 6 1.0125 1.8496 3.0908 24 9 0.9768 2.2551 1.8026 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 0.7089 1.1613 -3.4844 29 1 2.4157 -2.7377 0.9718 30 1 1.6238 -2.2852 2.5002 31 1 0.6903 -2.3002 0.9846 32 1 2.5968 -0.3361 5.1179 33 1 1.0579 0.7602 6.7324 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692872864.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:07 Heat of formation + Delta-G solvation = -91.698880 kcal Electronic energy + Delta-G solvation = -23798.878107 eV Core-core repulsion = 19927.293590 eV Total energy + Delta-G solvation = -3871.584517 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 322.034 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.63827 -41.46892 -38.43902 -38.03557 -37.96109 -37.03125 -34.54785 -34.34112 -32.27717 -30.95637 -27.32082 -27.06187 -25.67280 -25.20607 -22.63187 -20.39960 -19.70854 -19.23942 -18.82075 -18.51340 -18.09907 -17.62331 -17.07419 -16.78543 -16.33302 -15.45906 -15.30889 -15.26108 -15.12876 -14.79923 -14.55009 -14.44427 -13.76277 -13.43845 -13.29293 -13.19750 -13.02858 -12.99875 -12.78328 -12.73286 -12.59237 -12.56577 -12.23276 -12.18232 -11.90325 -11.65069 -11.30343 -11.14010 -10.52687 -10.47401 -9.73932 -8.09665 -6.24085 -1.11706 -0.74219 -0.41240 0.23891 1.44769 1.46960 1.56424 1.72296 2.02794 2.09404 2.45393 2.56761 2.91692 3.19055 3.24935 3.45319 3.70202 4.05003 4.17448 4.28684 4.40085 4.68476 4.84853 4.91404 4.93729 4.99640 5.11360 5.19882 5.61153 5.66660 5.83216 5.86500 6.09336 6.28338 6.83826 7.44986 8.94875 Molecular weight = 322.03amu Principal moments of inertia in cm(-1) A = 0.021899 B = 0.004486 C = 0.004055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.311395 B = 6239.586872 C = 6903.506784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.270 3.730 3 H 0.033 0.967 4 C -0.536 4.536 5 H 0.064 0.936 6 C 0.016 3.984 7 N -0.915 5.915 8 Si 0.958 3.042 9 H -0.270 1.270 10 H -0.286 1.286 11 H -0.271 1.271 12 N -0.985 5.985 13 C 0.095 3.905 14 S 2.697 3.303 15 O -0.958 6.958 16 O -0.982 6.982 17 C -0.761 4.761 18 C 0.067 3.933 19 C -0.160 4.160 20 C 0.239 3.761 21 Cl 0.012 6.988 22 N -0.546 5.546 23 C 0.405 3.595 24 F -0.099 7.099 25 H 0.067 0.933 26 H 0.021 0.979 27 H 0.047 0.953 28 H 0.264 0.736 29 H 0.055 0.945 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.211 0.789 33 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.372 -2.794 19.937 20.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.166 3.834 3 H 0.051 0.949 4 C -0.576 4.576 5 H 0.082 0.918 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.784 3.216 9 H -0.195 1.195 10 H -0.212 1.212 11 H -0.195 1.195 12 N -0.825 5.825 13 C -0.049 4.049 14 S 2.785 3.215 15 O -0.948 6.948 16 O -0.973 6.973 17 C -0.849 4.849 18 C 0.041 3.959 19 C -0.181 4.181 20 C 0.075 3.925 21 Cl 0.041 6.959 22 N -0.264 5.264 23 C 0.249 3.751 24 F -0.077 7.077 25 H 0.086 0.914 26 H 0.040 0.960 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.108 0.892 31 H 0.096 0.904 32 H 0.227 0.773 33 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -2.240 -1.886 19.599 19.816 hybrid contribution -0.235 0.021 -1.049 1.075 sum -2.476 -1.865 18.550 18.807 Atomic orbital electron populations 1.21934 0.97353 1.00122 1.00030 1.18531 0.91916 0.91939 0.81017 0.94934 1.21627 1.31810 1.13156 0.91011 0.91806 1.25679 0.95206 0.95656 1.01803 1.70006 1.37338 1.23730 1.24362 0.85555 0.78922 0.78308 0.78845 1.19500 1.21221 1.19517 1.57340 1.70397 1.21079 1.33709 1.21532 1.02247 0.79440 1.01719 1.01804 0.73960 0.73120 0.72633 1.93513 1.68051 1.58426 1.74779 1.93576 1.74289 1.57369 1.72018 1.32074 1.21434 1.14261 1.17154 1.21913 0.92806 0.93932 0.87228 1.22516 0.95190 0.95671 1.04726 1.22110 0.91472 0.91566 0.87344 1.98457 1.61624 1.80389 1.55399 1.66272 1.25150 1.31163 1.03829 1.17299 0.89519 0.88691 0.79543 1.91820 1.94430 1.89096 1.32375 0.91408 0.96029 0.93431 0.92676 0.92653 0.89195 0.90380 0.77250 0.76693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.25 8.76 71.98 0.63 -5.62 16 2 C 0.27 13.32 1.94 44.24 0.09 13.40 16 3 H 0.03 1.84 5.90 -2.39 -0.01 1.83 16 4 C -0.54 -28.76 8.37 25.60 0.21 -28.55 16 5 H 0.06 3.33 7.65 -2.91 -0.02 3.31 16 6 C 0.02 0.89 5.30 84.65 0.45 1.34 16 7 N -0.92 -52.16 11.32 21.45 0.24 -51.92 16 8 Si 0.96 43.09 29.54 68.60 2.03 45.12 16 9 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 10 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 11 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 12 N -0.98 -39.40 3.06 -520.43 -1.59 -40.99 16 13 C 0.10 3.01 9.53 127.77 1.22 4.22 16 14 S 2.70 100.58 5.30 -56.49 -0.30 100.28 16 15 O -0.96 -33.01 16.12 -128.00 -2.06 -35.07 16 16 O -0.98 -45.97 16.01 -128.00 -2.05 -48.02 16 17 C -0.76 -22.92 5.93 22.41 0.13 -22.79 16 18 C 0.07 1.29 9.66 22.45 0.22 1.51 16 19 C -0.16 -2.44 9.87 22.38 0.22 -2.22 16 20 C 0.24 5.32 7.27 84.69 0.62 5.93 16 21 Cl 0.01 0.22 29.11 -2.72 -0.08 0.14 16 22 N -0.55 -17.08 10.35 -187.76 -1.94 -19.02 16 23 C 0.40 14.16 8.33 84.71 0.71 14.86 16 24 F -0.10 -4.19 13.24 44.97 0.60 -3.59 16 25 H 0.07 3.55 6.07 -2.39 -0.01 3.53 16 26 H 0.02 0.89 7.02 -2.39 -0.02 0.88 16 27 H 0.05 2.01 6.66 -2.38 -0.02 2.00 16 28 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 29 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.09 2.09 7.79 -2.39 -0.02 2.08 16 31 H 0.08 2.41 6.43 -2.38 -0.02 2.39 16 32 H 0.21 2.53 7.43 -2.91 -0.02 2.51 16 33 H 0.22 1.00 8.06 -2.91 -0.02 0.98 16 Total: -1.00 -70.93 309.81 0.49 -70.43 By element: Atomic # 1 Polarization: -0.62 SS G_CDS: 1.17 Total: 0.55 kcal Atomic # 6 Polarization: -22.40 SS G_CDS: 4.49 Total: -17.91 kcal Atomic # 7 Polarization: -108.64 SS G_CDS: -3.30 Total: -111.93 kcal Atomic # 8 Polarization: -78.98 SS G_CDS: -4.11 Total: -83.09 kcal Atomic # 9 Polarization: -4.19 SS G_CDS: 0.60 Total: -3.59 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: 100.58 SS G_CDS: -0.30 Total: 100.28 kcal Atomic # 17 Polarization: 0.22 SS G_CDS: -0.08 Total: 0.14 kcal Total: -70.93 0.49 -70.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692872864.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.267 kcal (2) G-P(sol) polarization free energy of solvation -70.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds