Wall clock time and date at job start Tue Mar 31 2020 12:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46917 * 2 1 4 4 C 1.50695 * 109.47326 * 120.00157 * 2 1 3 5 5 H 1.07998 * 120.00088 * 119.99791 * 4 2 1 6 6 C 1.37876 * 120.00002 * 300.00222 * 4 2 1 7 7 N 1.31520 * 120.00263 * 179.97438 * 6 4 2 8 8 Si 1.86808 * 120.00052 * 359.97438 * 6 4 2 9 9 H 1.48499 * 109.46915 * 89.99923 * 8 6 4 10 10 H 1.48501 * 109.47098 * 210.00138 * 8 6 4 11 11 H 1.48497 * 109.46587 * 330.00221 * 8 6 4 12 12 N 1.46499 * 109.46795 * 240.00114 * 2 1 3 13 13 C 1.46502 * 120.00319 * 299.99768 * 12 2 1 14 14 S 1.65606 * 119.99787 * 120.00246 * 12 2 1 15 15 O 1.42105 * 106.40223 * 156.45863 * 14 12 2 16 16 O 1.42097 * 106.40445 * 23.53417 * 14 12 2 17 17 C 1.76199 * 107.21569 * 269.99618 * 14 12 2 18 18 C 1.38581 * 120.41614 * 115.00214 * 17 14 12 19 19 C 1.38649 * 118.46890 * 180.02562 * 18 17 14 20 20 C 1.38314 * 119.21150 * 359.97438 * 19 18 17 21 21 Cl 1.73593 * 119.62102 * 180.02562 * 20 19 18 22 22 N 1.32002 * 120.76021 * 0.02988 * 20 19 18 23 23 C 1.32080 * 121.67372 * 359.65585 * 22 20 19 24 24 F 1.35101 * 119.64374 * 180.31254 * 23 22 20 25 25 H 1.08995 * 109.47013 * 60.00026 * 1 2 3 26 26 H 1.09001 * 109.46917 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46988 * 299.99403 * 1 2 3 28 28 H 0.96998 * 120.00047 * 179.97438 * 7 6 4 29 29 H 1.09003 * 109.46677 * 270.00465 * 13 12 2 30 30 H 1.08996 * 109.47080 * 30.00325 * 13 12 2 31 31 H 1.08999 * 109.47130 * 150.00408 * 13 12 2 32 32 H 1.08000 * 120.76878 * 0.02562 * 18 17 14 33 33 H 1.07998 * 120.39340 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1373 -0.8597 3.5565 8 14 0.6259 1.2798 2.6542 9 1 -0.8020 0.8744 2.6993 10 1 0.9772 1.9953 3.9071 11 1 0.8491 2.1772 1.4923 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4281 14 16 2.9704 0.1143 -2.2863 15 8 3.7118 -0.8788 -2.9816 16 8 3.5794 1.1830 -1.5749 17 6 1.8960 0.8536 -3.4711 18 6 1.8103 2.2327 -3.5761 19 6 0.9515 2.7714 -4.5219 20 6 0.2133 1.9213 -5.3253 21 17 -0.8648 2.5843 -6.5135 22 7 0.3189 0.6116 -5.1988 23 6 1.1312 0.0637 -4.3131 24 9 1.2118 -1.2819 -4.2229 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.9033 -0.5281 4.4375 29 1 2.4158 -2.7376 -0.9717 30 1 0.6904 -2.3002 -0.9848 31 1 1.6238 -2.2852 -2.5003 32 1 2.3989 2.8732 -2.9360 33 1 0.8601 3.8421 -4.6301 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692872878.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:09 Heat of formation + Delta-G solvation = -84.288066 kcal Electronic energy + Delta-G solvation = -23735.911031 eV Core-core repulsion = 19864.647871 eV Total energy + Delta-G solvation = -3871.263160 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 322.034 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.74695 -41.49541 -38.53055 -38.17008 -38.05356 -37.09070 -34.54981 -34.36533 -32.32729 -31.85123 -27.43818 -27.00213 -25.75744 -25.26090 -22.70581 -20.45461 -19.83352 -19.28640 -19.00908 -18.73052 -18.21298 -17.68844 -17.23044 -16.89631 -16.43498 -15.59455 -15.39265 -15.29449 -15.18154 -14.98470 -14.69619 -14.37318 -14.20112 -13.88509 -13.52399 -13.35399 -13.19890 -13.06077 -12.97883 -12.78828 -12.75829 -12.57734 -12.17562 -12.01187 -11.68528 -11.44486 -11.36515 -11.31486 -10.74340 -10.54159 -9.86557 -8.27051 -6.33157 -1.16618 -0.82434 -0.44692 0.21831 1.33872 1.41281 1.50223 1.66193 1.94358 2.00482 2.34388 2.52450 2.84583 3.07228 3.18059 3.40982 3.61940 3.89710 4.13973 4.25597 4.37379 4.43169 4.59270 4.65360 4.72529 4.81919 4.90144 5.07724 5.13735 5.46723 5.54983 5.74142 5.78156 6.34259 6.72099 7.31308 8.89430 Molecular weight = 322.03amu Principal moments of inertia in cm(-1) A = 0.017573 B = 0.004896 C = 0.004403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.935766 B = 5717.111297 C = 6357.239806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.239 3.761 3 H 0.060 0.940 4 C -0.526 4.526 5 H 0.043 0.957 6 C 0.017 3.983 7 N -0.944 5.944 8 Si 0.936 3.064 9 H -0.258 1.258 10 H -0.299 1.299 11 H -0.237 1.237 12 N -0.978 5.978 13 C 0.093 3.907 14 S 2.697 3.303 15 O -0.971 6.971 16 O -0.963 6.963 17 C -0.758 4.758 18 C 0.062 3.938 19 C -0.160 4.160 20 C 0.241 3.759 21 Cl 0.015 6.985 22 N -0.538 5.538 23 C 0.413 3.587 24 F -0.092 7.092 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.047 0.953 28 H 0.267 0.733 29 H 0.046 0.954 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.200 0.800 33 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.009 10.194 -18.935 22.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.133 3.867 3 H 0.078 0.922 4 C -0.566 4.566 5 H 0.061 0.939 6 C -0.181 4.181 7 N -0.583 5.583 8 Si 0.761 3.239 9 H -0.184 1.184 10 H -0.226 1.226 11 H -0.160 1.160 12 N -0.817 5.817 13 C -0.052 4.052 14 S 2.786 3.214 15 O -0.962 6.962 16 O -0.953 6.953 17 C -0.847 4.847 18 C 0.037 3.963 19 C -0.181 4.181 20 C 0.078 3.922 21 Cl 0.044 6.956 22 N -0.256 5.256 23 C 0.257 3.743 24 F -0.071 7.071 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.217 0.783 33 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -6.711 9.695 -19.425 22.724 hybrid contribution -0.506 0.255 0.717 0.914 sum -7.217 9.950 -18.708 22.385 Atomic orbital electron populations 1.22426 0.96631 1.02615 1.00422 1.19014 0.92240 0.93178 0.82224 0.92207 1.21376 1.31718 1.13272 0.90193 0.93890 1.25768 0.97253 0.99896 0.95179 1.70028 1.47276 1.42364 0.98670 0.86065 0.79445 0.80188 0.78156 1.18371 1.22636 1.16000 1.57092 1.70470 1.20811 1.33365 1.21595 1.02340 0.79847 1.01460 1.01784 0.73805 0.73129 0.72704 1.93559 1.68353 1.59361 1.74894 1.93549 1.73645 1.56527 1.71576 1.31945 1.23637 1.06974 1.22126 1.21858 0.91104 0.90794 0.92590 1.22477 0.96315 1.04169 0.95174 1.22023 0.91283 0.87737 0.91129 1.98466 1.61379 1.81900 1.53855 1.66291 1.21632 1.15219 1.22431 1.17043 0.89452 0.78362 0.89454 1.91682 1.93803 1.27651 1.93927 0.91684 0.91480 0.93453 0.92382 0.93569 0.89642 0.89858 0.78315 0.77167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.92 8.65 71.98 0.62 -5.30 16 2 C 0.24 10.25 2.21 44.25 0.10 10.35 16 3 H 0.06 2.58 5.97 -2.39 -0.01 2.57 16 4 C -0.53 -28.42 8.95 25.60 0.23 -28.19 16 5 H 0.04 2.60 7.89 -2.91 -0.02 2.58 16 6 C 0.02 0.97 5.45 84.65 0.46 1.43 16 7 N -0.94 -57.01 13.96 21.45 0.30 -56.71 16 8 Si 0.94 41.25 24.37 68.60 1.67 42.92 16 9 H -0.26 -10.55 6.87 99.48 0.68 -9.87 16 10 H -0.30 -13.39 7.11 99.48 0.71 -12.68 16 11 H -0.24 -9.30 6.53 99.48 0.65 -8.65 16 12 N -0.98 -37.32 3.06 -520.45 -1.59 -38.91 16 13 C 0.09 3.18 9.49 127.77 1.21 4.40 16 14 S 2.70 94.95 5.31 -56.49 -0.30 94.65 16 15 O -0.97 -37.72 16.51 -128.00 -2.11 -39.83 16 16 O -0.96 -37.30 15.61 -128.00 -2.00 -39.30 16 17 C -0.76 -20.42 5.93 22.41 0.13 -20.29 16 18 C 0.06 1.21 9.66 22.45 0.22 1.42 16 19 C -0.16 -2.31 9.88 22.39 0.22 -2.09 16 20 C 0.24 4.64 7.27 84.69 0.62 5.26 16 21 Cl 0.01 0.22 29.11 -2.72 -0.08 0.15 16 22 N -0.54 -13.72 10.35 -187.76 -1.94 -15.67 16 23 C 0.41 11.48 8.33 84.72 0.71 12.19 16 24 F -0.09 -2.70 13.74 44.97 0.62 -2.08 16 25 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.07 2.37 6.66 -2.39 -0.02 2.36 16 27 H 0.05 1.78 3.27 -2.39 -0.01 1.78 16 28 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 29 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.08 2.74 6.43 -2.39 -0.02 2.72 16 31 H 0.08 2.48 5.11 -2.39 -0.01 2.47 16 32 H 0.20 2.97 7.43 -2.91 -0.02 2.95 16 33 H 0.21 1.07 8.06 -2.91 -0.02 1.04 16 Total: -1.00 -70.61 303.77 0.17 -70.44 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: 1.10 Total: 5.17 kcal Atomic # 6 Polarization: -25.35 SS G_CDS: 4.52 Total: -20.83 kcal Atomic # 7 Polarization: -108.05 SS G_CDS: -3.24 Total: -111.29 kcal Atomic # 8 Polarization: -75.02 SS G_CDS: -4.11 Total: -79.13 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.62 Total: -2.08 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 1.67 Total: 42.92 kcal Atomic # 16 Polarization: 94.95 SS G_CDS: -0.30 Total: 94.65 kcal Atomic # 17 Polarization: 0.22 SS G_CDS: -0.08 Total: 0.15 kcal Total: -70.61 0.17 -70.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692872878.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.849 kcal (2) G-P(sol) polarization free energy of solvation -70.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds