Wall clock time and date at job start Tue Mar 31 2020 12:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46495 * 109.47246 * 2 1 4 4 C 1.46504 * 120.00341 * 275.00135 * 3 2 1 5 5 C 1.50702 * 109.47131 * 274.99920 * 4 3 2 6 6 H 1.07997 * 119.99794 * 359.97438 * 5 4 3 7 7 C 1.37873 * 119.99992 * 179.97438 * 5 4 3 8 8 N 1.31522 * 120.00008 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00096 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47041 * 89.99885 * 9 7 5 11 11 H 1.48500 * 109.46937 * 209.99778 * 9 7 5 12 12 H 1.48500 * 109.47134 * 329.99736 * 9 7 5 13 13 S 1.65603 * 120.00034 * 95.00321 * 3 2 1 14 14 O 1.42107 * 106.39849 * 336.45874 * 13 3 2 15 15 O 1.42100 * 106.40334 * 203.53926 * 13 3 2 16 16 C 1.76193 * 107.22080 * 89.99764 * 13 3 2 17 17 C 1.38587 * 120.41681 * 115.00047 * 16 13 3 18 18 C 1.38642 * 118.46953 * 179.97438 * 17 16 13 19 19 C 1.38309 * 119.21118 * 0.02562 * 18 17 16 20 20 Cl 1.73605 * 119.61938 * 179.97438 * 19 18 17 21 21 N 1.32004 * 120.76381 * 359.97438 * 19 18 17 22 22 C 1.32076 * 121.67195 * 0.02562 * 21 19 18 23 23 F 1.35094 * 119.64429 * 179.97438 * 22 21 19 24 24 H 1.09004 * 109.47074 * 299.99982 * 1 2 3 25 25 H 1.09001 * 109.47540 * 59.99604 * 1 2 3 26 26 H 1.09000 * 109.47270 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46756 * 240.00400 * 2 1 3 28 28 H 1.08994 * 109.47279 * 120.00117 * 2 1 3 29 29 H 1.09005 * 109.46760 * 35.00002 * 4 3 2 30 30 H 1.09001 * 109.47167 * 154.99571 * 4 3 2 31 31 H 0.96996 * 119.99971 * 180.02562 * 8 7 5 32 32 H 1.07999 * 120.76198 * 359.95835 * 17 16 13 33 33 H 1.08004 * 120.39366 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4948 1.7889 -1.8823 6 1 4.1723 1.1117 -1.3836 7 6 3.8525 2.3607 -3.0848 8 7 3.0271 3.1849 -3.6924 9 14 5.5089 1.9637 -3.8518 10 1 5.3728 0.7804 -4.7386 11 1 5.9777 3.1269 -4.6469 12 1 6.4928 1.6681 -2.7795 13 16 2.4123 2.1201 1.4287 14 8 1.6869 1.4414 2.4448 15 8 2.3058 3.5185 1.1999 16 6 4.1170 1.7940 1.7320 17 6 5.0384 2.8291 1.7425 18 6 6.3693 2.5268 1.9859 19 6 6.7328 1.2110 2.2083 20 17 8.3966 0.8203 2.5135 21 7 5.8293 0.2487 2.1913 22 6 4.5530 0.4999 1.9629 23 9 3.6630 -0.5165 1.9543 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.3617 1.8098 -1.9453 30 1 2.0921 3.1803 -1.0755 31 1 3.2786 3.5869 -4.5386 32 1 4.7267 3.8478 1.5649 33 1 7.1135 3.3094 2.0016 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703088961.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:38 Heat of formation + Delta-G solvation = -79.207379 kcal Electronic energy + Delta-G solvation = -23845.289413 eV Core-core repulsion = 19974.246568 eV Total energy + Delta-G solvation = -3871.042845 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 322.034 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.42499 -40.25554 -37.01644 -36.87881 -36.18157 -35.48493 -33.11463 -32.81314 -31.10796 -30.02921 -26.75434 -24.52437 -24.02746 -23.20390 -21.80948 -19.05042 -18.52483 -17.92739 -17.21936 -17.09729 -16.43466 -16.27409 -15.79507 -15.48468 -14.60280 -14.32465 -14.13132 -14.08624 -13.67531 -13.48702 -13.26931 -12.97682 -12.17190 -12.10367 -11.93243 -11.80836 -11.73001 -11.64526 -11.49793 -11.33974 -11.12565 -11.03174 -10.58983 -10.46242 -10.42162 -10.16173 -10.03826 -9.89169 -9.34120 -8.59285 -8.21975 -6.21337 -4.28729 0.14471 0.75234 0.79469 1.31058 2.98116 3.18136 3.25875 3.26075 3.27540 3.41363 3.98876 4.16051 4.28135 4.45825 4.58999 5.00898 5.13377 5.27696 5.36222 5.44732 5.50338 5.73384 5.78546 6.03768 6.08830 6.28785 6.58264 6.64617 6.99873 7.21464 7.28621 7.49202 7.74382 8.02460 8.75179 9.38254 10.86407 Molecular weight = 322.03amu Principal moments of inertia in cm(-1) A = 0.010157 B = 0.007314 C = 0.005100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2756.133304 B = 3827.362196 C = 5489.281992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.117 3.883 3 N -0.972 5.972 4 C 0.243 3.757 5 C -0.546 4.546 6 H 0.058 0.942 7 C 0.069 3.931 8 N -0.886 5.886 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.283 1.283 12 H -0.274 1.274 13 S 2.691 3.309 14 O -0.959 6.959 15 O -0.945 6.945 16 C -0.738 4.738 17 C 0.071 3.929 18 C -0.184 4.184 19 C 0.249 3.751 20 Cl -0.012 7.012 21 N -0.523 5.523 22 C 0.424 3.576 23 F -0.087 7.087 24 H 0.057 0.943 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.047 0.953 30 H 0.055 0.945 31 H 0.266 0.734 32 H 0.177 0.823 33 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.407 -2.423 10.381 11.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.009 4.009 3 N -0.813 5.813 4 C 0.121 3.879 5 C -0.585 4.585 6 H 0.076 0.924 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.717 3.283 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.199 1.199 13 S 2.774 3.226 14 O -0.949 6.949 15 O -0.935 6.935 16 C -0.822 4.822 17 C 0.045 3.955 18 C -0.206 4.206 19 C 0.085 3.915 20 Cl 0.016 6.984 21 N -0.240 5.240 22 C 0.269 3.731 23 F -0.066 7.066 24 H 0.076 0.924 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.102 0.898 28 H 0.092 0.908 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.195 0.805 33 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 4.265 -2.763 10.914 12.039 hybrid contribution 1.605 -0.165 -0.954 1.874 sum 5.870 -2.928 9.960 11.926 Atomic orbital electron populations 1.22189 0.96319 1.01715 1.02538 1.21284 0.94188 0.82233 1.03149 1.57422 1.76880 1.23648 1.23349 1.19332 0.97597 0.92426 0.78551 1.21496 1.02257 1.28328 1.06428 0.92426 1.24902 0.97187 0.94664 0.96745 1.69919 1.35887 1.29535 1.16995 0.86624 0.83953 0.78174 0.79506 1.20397 1.20853 1.19941 1.02330 0.72897 0.74089 0.73307 1.93574 1.68431 1.75703 1.57209 1.93564 1.85184 1.29395 1.85382 1.32318 1.31594 0.98792 1.19541 1.21382 0.90554 0.99739 0.83830 1.21973 0.98074 0.95819 1.04711 1.21468 0.87591 0.89095 0.93347 1.98434 1.11594 1.95173 1.93166 1.66181 1.00974 1.37944 1.18946 1.16920 0.83958 0.82052 0.90187 1.91685 1.63665 1.58921 1.92282 0.92434 0.91927 0.92028 0.89812 0.90833 0.93459 0.92663 0.92418 0.80534 0.81878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.55 10.24 37.16 0.38 -2.17 16 2 C 0.12 2.01 5.95 -4.05 -0.02 1.99 16 3 N -0.97 -19.30 2.77 -115.66 -0.32 -19.62 16 4 C 0.24 5.69 5.43 -5.19 -0.03 5.66 16 5 C -0.55 -13.86 9.38 -34.44 -0.32 -14.18 16 6 H 0.06 1.45 7.81 -52.49 -0.41 1.04 16 7 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 8 N -0.89 -24.34 13.29 55.43 0.74 -23.61 16 9 Si 0.89 20.37 29.54 -169.99 -5.02 15.35 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 13 S 2.69 51.12 5.31 -107.50 -0.57 50.54 16 14 O -0.96 -18.62 16.42 -57.17 -0.94 -19.56 16 15 O -0.95 -19.54 15.60 -57.17 -0.89 -20.43 16 16 C -0.74 -12.82 5.93 -39.36 -0.23 -13.05 16 17 C 0.07 1.05 9.66 -39.30 -0.38 0.67 16 18 C -0.18 -2.38 9.87 -39.41 -0.39 -2.77 16 19 C 0.25 3.62 7.27 -17.45 -0.13 3.49 16 20 Cl -0.01 -0.15 29.11 -51.86 -1.51 -1.66 16 21 N -0.52 -8.84 10.35 -10.70 -0.11 -8.95 16 22 C 0.42 7.45 8.33 -17.35 -0.14 7.31 16 23 F -0.09 -1.49 13.82 2.25 0.03 -1.46 16 24 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.08 1.43 8.11 -51.93 -0.42 1.01 16 28 H 0.07 1.18 5.10 -51.93 -0.26 0.92 16 29 H 0.05 1.15 8.11 -51.93 -0.42 0.72 16 30 H 0.06 1.39 6.91 -51.93 -0.36 1.03 16 31 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 32 H 0.18 2.27 7.43 -52.49 -0.39 1.88 16 33 H 0.16 1.46 8.06 -52.48 -0.42 1.04 16 LS Contribution 319.32 15.07 4.81 4.81 Total: -1.00 -29.87 319.32 -8.24 -38.11 By element: Atomic # 1 Polarization: 0.90 SS G_CDS: -3.09 Total: -2.19 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: -1.37 Total: -11.34 kcal Atomic # 7 Polarization: -52.48 SS G_CDS: 0.31 Total: -52.18 kcal Atomic # 8 Polarization: -38.16 SS G_CDS: -1.83 Total: -39.99 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.03 Total: -1.46 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: 51.12 SS G_CDS: -0.57 Total: 50.54 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -1.51 Total: -1.66 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.87 -8.24 -38.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703088961.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.100 kcal (2) G-P(sol) polarization free energy of solvation -29.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds